Literature DB >> 28730434

Cotranscriptional Production of Chemically Modified RNA Nanoparticles.

Maria L Kireeva1, Kirill A Afonin2,3,4, Bruce A Shapiro2,5, Mikhail Kashlev2.   

Abstract

RNA nanoparticles consisting of multiple RNA strands of different sequences forming various three-dimensional structures emerge as promising carriers of siRNAs, RNA aptamers, and ribozymes. In vitro transcription of a mixture of dsDNA templates encoding all the subunits of the RNA nanoparticle may result in cotranscriptional self-assembly of the nanoparticle. Based on our experience with production of RNA nanorings, RNA nanocubes, and RNA three-way junctions, we propose a strategy for optimization of the cotranscriptional production of chemically modified ribonuclease-resistant RNA nanoparticles.

Entities:  

Keywords:  2′-F-dCTP; 2′-F-dUTP; Cotranscriptional assembly; In vitro transcription; RNA nanocubes; RNA nanorings; T7 R&DNA polymerase; T7 RNA polymerase

Mesh:

Substances:

Year:  2017        PMID: 28730434      PMCID: PMC7927353          DOI: 10.1007/978-1-4939-7138-1_6

Source DB:  PubMed          Journal:  Methods Mol Biol        ISSN: 1064-3745


  28 in total

1.  The Use of Minimal RNA Toeholds to Trigger the Activation of Multiple Functionalities.

Authors:  Kirill A Afonin; Mathias Viard; Philip Tedbury; Eckart Bindewald; Lorena Parlea; Marshall Howington; Melissa Valdman; Alizah Johns-Boehme; Cara Brainerd; Eric O Freed; Bruce A Shapiro
Journal:  Nano Lett       Date:  2016-02-29       Impact factor: 11.189

2.  Synthesis of small RNAs using T7 RNA polymerase.

Authors:  J F Milligan; O C Uhlenbeck
Journal:  Methods Enzymol       Date:  1989       Impact factor: 1.600

Review 3.  Large volume flow electroporation of mRNA: clinical scale process.

Authors:  Linhong Li; Cornell Allen; Rama Shivakumar; Madhusudan V Peshwa
Journal:  Methods Mol Biol       Date:  2013

4.  Design and self-assembly of siRNA-functionalized RNA nanoparticles for use in automated nanomedicine.

Authors:  Kirill A Afonin; Wade W Grabow; Faye M Walker; Eckart Bindewald; Marina A Dobrovolskaia; Bruce A Shapiro; Luc Jaeger
Journal:  Nat Protoc       Date:  2011-12-01       Impact factor: 13.491

5.  Enzymatic synthesis of 2'-modified nucleic acids: identification of important phosphate and ribose moieties in RNase P substrates.

Authors:  F Conrad; A Hanne; R K Gaur; G Krupp
Journal:  Nucleic Acids Res       Date:  1995-06-11       Impact factor: 16.971

6.  Template-dependent incorporation of 8-N3AMP into RNA with bacteriophage T7 RNA polymerase.

Authors:  Sailesh Gopalakrishna; Veronica Gusti; Sethulekshmy Nair; Saurabh Sahar; Rajesh K Gaur
Journal:  RNA       Date:  2004-09-23       Impact factor: 4.942

7.  Ring Catalog: A resource for designing self-assembling RNA nanostructures.

Authors:  Lorena Parlea; Eckart Bindewald; Rishabh Sharan; Nathan Bartlett; Daniel Moriarty; Jerome Oliver; Kirill A Afonin; Bruce A Shapiro
Journal:  Methods       Date:  2016-04-26       Impact factor: 3.608

Review 8.  Clinical experiences with systemically administered siRNA-based therapeutics in cancer.

Authors:  Jonathan E Zuckerman; Mark E Davis
Journal:  Nat Rev Drug Discov       Date:  2015-11-16       Impact factor: 84.694

Review 9.  The promises and pitfalls of RNA-interference-based therapeutics.

Authors:  Daniela Castanotto; John J Rossi
Journal:  Nature       Date:  2009-01-22       Impact factor: 49.962

10.  Attenuation of loop-receptor interactions with pseudoknot formation.

Authors:  Kirill A Afonin; Yen-Ping Lin; Erin R Calkins; Luc Jaeger
Journal:  Nucleic Acids Res       Date:  2011-11-10       Impact factor: 16.971

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  3 in total

1.  Challenges to optimizing RNA nanostructures for large scale production and controlled therapeutic properties.

Authors:  Morgan Chandler; Martin Panigaj; Lewis A Rolband; Kirill A Afonin
Journal:  Nanomedicine (Lond)       Date:  2020-05-26       Impact factor: 5.307

2.  Combination of Nucleic Acid and Mesoporous Silica Nanoparticles: Optimization and Therapeutic Performance In Vitro.

Authors:  Ridhima Juneja; Hemapriyadarshini Vadarevu; Justin Halman; Mubin Tarannum; Lauren Rackley; Jacob Dobbs; Jose Marquez; Morgan Chandler; Kirill Afonin; Juan L Vivero-Escoto
Journal:  ACS Appl Mater Interfaces       Date:  2020-08-18       Impact factor: 9.229

Review 3.  Nucleic Acid Nanoparticles at a Crossroads of Vaccines and Immunotherapies.

Authors:  Marina A Dobrovolskaia
Journal:  Molecules       Date:  2019-12-17       Impact factor: 4.411

  3 in total

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