Literature DB >> 21229999

Self-assembling RNA nanorings based on RNAI/II inverse kissing complexes.

Wade W Grabow1, Paul Zakrevsky, Kirill A Afonin, Arkadiusz Chworos, Bruce A Shapiro, Luc Jaeger.   

Abstract

RNA is an attractive biopolymer for nanodesign of self-assembling particles for nanobiotechnology and synthetic biology. Here, we experimentally characterize by biochemical and biophysical methods the formation of thermostable and ribonuclease resistant RNA nanorings previously proposed by computational design. High yields of fully programmable nanorings were produced based on several RNAI/IIi kissing complex variants selected for their ability to promote polygon self-assembly. This self-assembly strategy relying on the particular geometry of bended kissing complexes has potential for developing short interfering RNA delivery agents.

Entities:  

Mesh:

Substances:

Year:  2011        PMID: 21229999      PMCID: PMC3036768          DOI: 10.1021/nl104271s

Source DB:  PubMed          Journal:  Nano Lett        ISSN: 1530-6984            Impact factor:   11.189


  59 in total

1.  Design, construction, and analysis of a novel class of self-folding RNA.

Authors:  Yoshiya Ikawa; Kazutake Fukada; Shin-ichi Watanabe; Hideaki Shiraishi; Tan Inoue
Journal:  Structure       Date:  2002-04       Impact factor: 5.006

2.  Bottom-up Assembly of RNA Arrays and Superstructures as Potential Parts in Nanotechnology.

Authors:  Dan Shu; Wulf-Dieter Moll; Zhaoxiang Deng; Chengde Mao; Peixuan Guo
Journal:  Nano Lett       Date:  2004-09       Impact factor: 11.189

Review 3.  RNA nanotechnology: engineering, assembly and applications in detection, gene delivery and therapy.

Authors:  Peixuan Guo
Journal:  J Nanosci Nanotechnol       Date:  2005-12

4.  Folding DNA to create nanoscale shapes and patterns.

Authors:  Paul W K Rothemund
Journal:  Nature       Date:  2006-03-16       Impact factor: 49.962

5.  Balancing flexibility and stress in DNA nanostructures.

Authors:  Yu He; Chengde Mao
Journal:  Chem Commun (Camb)       Date:  2006-01-20       Impact factor: 6.222

Review 6.  Functional aptamers and aptazymes in biotechnology, diagnostics, and therapy.

Authors:  Michael Famulok; Jörg S Hartig; Günter Mayer
Journal:  Chem Rev       Date:  2007-08-23       Impact factor: 60.622

7.  RNA dynamics: it is about time.

Authors:  Hashim M Al-Hashimi; Nils G Walter
Journal:  Curr Opin Struct Biol       Date:  2008-06-09       Impact factor: 6.809

8.  Non-canonical interactions in a kissing loop complex: the dimerization initiation site of HIV-1 genomic RNA.

Authors:  J C Paillart; E Westhof; C Ehresmann; B Ehresmann; R Marquet
Journal:  J Mol Biol       Date:  1997-07-04       Impact factor: 5.469

9.  Cell type-specific delivery of siRNAs with aptamer-siRNA chimeras.

Authors:  James O McNamara; Eran R Andrechek; Yong Wang; Kristi D Viles; Rachel E Rempel; Eli Gilboa; Bruce A Sullenger; Paloma H Giangrande
Journal:  Nat Biotechnol       Date:  2006-06-25       Impact factor: 54.908

10.  Evidence of RNAi in humans from systemically administered siRNA via targeted nanoparticles.

Authors:  Mark E Davis; Jonathan E Zuckerman; Chung Hang J Choi; David Seligson; Anthony Tolcher; Christopher A Alabi; Yun Yen; Jeremy D Heidel; Antoni Ribas
Journal:  Nature       Date:  2010-03-21       Impact factor: 49.962

View more
  85 in total

1.  siRNA delivery: Loaded-up microsponges.

Authors:  Wade W Grabow; Luc Jaeger
Journal:  Nat Mater       Date:  2012-03-22       Impact factor: 43.841

2.  Multistrand RNA secondary structure prediction and nanostructure design including pseudoknots.

Authors:  Eckart Bindewald; Kirill Afonin; Luc Jaeger; Bruce A Shapiro
Journal:  ACS Nano       Date:  2011-11-17       Impact factor: 15.881

3.  RNA nanotechnology for computer design and in vivo computation.

Authors:  Meikang Qiu; Emil Khisamutdinov; Zhengyi Zhao; Cheryl Pan; Jeong-Woo Choi; Neocles B Leontis; Peixuan Guo
Journal:  Philos Trans A Math Phys Eng Sci       Date:  2013-09-02       Impact factor: 4.226

4.  Crystal-Structure-Guided Design of Self-Assembling RNA Nanotriangles.

Authors:  Mark A Boerneke; Sergey M Dibrov; Thomas Hermann
Journal:  Angew Chem Int Ed Engl       Date:  2016-02-23       Impact factor: 15.336

5.  Bolaamphiphiles as carriers for siRNA delivery: From chemical syntheses to practical applications.

Authors:  Kshitij Gupta; Kirill A Afonin; Mathias Viard; Virginia Herrero; Wojciech Kasprzak; Ioannis Kagiampakis; Taejin Kim; Alexey Y Koyfman; Anu Puri; Marissa Stepler; Alison Sappe; Vineet N KewalRamani; Sarina Grinberg; Charles Linder; Eliahu Heldman; Robert Blumenthal; Bruce A Shapiro
Journal:  J Control Release       Date:  2015-07-04       Impact factor: 9.776

6.  Different sequences show similar quaternary interaction stabilities in prohead viral RNA self-assembly.

Authors:  Xiaobo Gu; Susan J Schroeder
Journal:  J Biol Chem       Date:  2011-02-24       Impact factor: 5.157

7.  Intracellular Reassociation of RNA-DNA Hybrids that Activates RNAi in HIV-Infected Cells.

Authors:  Angelica N Martins; Weina Ke; Vaishnavi Jawahar; Morriah Striplin; Caryn Striplin; Eric O Freed; Kirill A Afonin
Journal:  Methods Mol Biol       Date:  2017

Review 8.  RNA interference for glioblastoma therapy: Innovation ladder from the bench to clinical trials.

Authors:  Eunice L Lozada-Delgado; Nilmary Grafals-Ruiz; Pablo E Vivas-Mejía
Journal:  Life Sci       Date:  2017-08-31       Impact factor: 5.037

9.  RNAi Screening of the Glucose-Regulated Chaperones in Cancer with Self-Assembled siRNA Nanostructures.

Authors:  Mayurbhai R Patel; Stephen D Kozuch; Christopher N Cultrara; Reeta Yadav; Suiying Huang; Uri Samuni; John Koren; Gabriela Chiosis; David Sabatino
Journal:  Nano Lett       Date:  2016-10-03       Impact factor: 11.189

10.  Fabrication of RNA 3D Nanoprisms for Loading and Protection of Small RNAs and Model Drugs.

Authors:  Emil F Khisamutdinov; Daniel L Jasinski; Hui Li; Kaiming Zhang; Wah Chiu; Peixuan Guo
Journal:  Adv Mater       Date:  2016-10-19       Impact factor: 30.849

View more

北京卡尤迪生物科技股份有限公司 © 2022-2023.