Literature DB >> 21155596

Fabrication of stable and RNase-resistant RNA nanoparticles active in gearing the nanomotors for viral DNA packaging.

Jing Liu1, Songchuan Guo, Mathieu Cinier, Luda S Shlyakhtenko, Yi Shu, Chaoping Chen, Guanxin Shen, Peixuan Guo.   

Abstract

Both DNA and RNA can serve as powerful building blocks for bottom-up fabrication of nanostructures. A pioneering concept proposed by Ned Seeman 30 years ago has led to an explosion of knowledge in DNA nanotechnology. RNA can be manipulated with simplicity characteristic of DNA, while possessing noncanonical base-pairing, versatile function, and catalytic activity similar to proteins. However, standing in awe of the sensitivity of RNA to RNase degradation has made many scientists flinch away from RNA nanotechnology. Here we report the construction of stable RNA nanoparticles resistant to RNase digestion. The 2'-F (2'-fluoro) RNA retained its property for correct folding in dimer formation, appropriate structure in procapsid binding, and biological activity in gearing the phi29 nanomotor to package viral DNA and producing infectious viral particles. Our results demonstrate that it is practical to produce RNase-resistant, biologically active, and stable RNA for application in nanotechnology.

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Year:  2010        PMID: 21155596      PMCID: PMC3026857          DOI: 10.1021/nn1024658

Source DB:  PubMed          Journal:  ACS Nano        ISSN: 1936-0851            Impact factor:   15.881


  81 in total

1.  Detailed architecture of a DNA translocating machine: the high-resolution structure of the bacteriophage phi29 connector particle.

Authors:  Alicia Guasch; Joan Pous; Borja Ibarra; F Xavier Gomis-Rüth; José María Valpuesta; Natalia Sousa; José L Carrascosa; Miquel Coll
Journal:  J Mol Biol       Date:  2002-01-25       Impact factor: 5.469

2.  Three-dimensional interaction of Phi29 pRNA dimer probed by chemical modification interference, cryo-AFM, and cross-linking.

Authors:  Y Mat-Arip; K Garver; C Chen; S Sheng; Z Shao; P Guo
Journal:  J Biol Chem       Date:  2001-05-22       Impact factor: 5.157

3.  RNA interference in mammalian cells by chemically-modified RNA.

Authors:  Dwaine A Braasch; Susan Jensen; Yinghui Liu; Kiran Kaur; Khalil Arar; Michael A White; David R Corey
Journal:  Biochemistry       Date:  2003-07-08       Impact factor: 3.162

4.  Bottom-up Assembly of RNA Arrays and Superstructures as Potential Parts in Nanotechnology.

Authors:  Dan Shu; Wulf-Dieter Moll; Zhaoxiang Deng; Chengde Mao; Peixuan Guo
Journal:  Nano Lett       Date:  2004-09       Impact factor: 11.189

Review 5.  New approaches to nanofabrication: molding, printing, and other techniques.

Authors:  Byron D Gates; Qiaobing Xu; Michael Stewart; Declan Ryan; C Grant Willson; George M Whitesides
Journal:  Chem Rev       Date:  2005-04       Impact factor: 60.622

Review 6.  RNA nanotechnology: engineering, assembly and applications in detection, gene delivery and therapy.

Authors:  Peixuan Guo
Journal:  J Nanosci Nanotechnol       Date:  2005-12

Review 7.  Non-coding RNAs: regulators of disease.

Authors:  Ryan J Taft; Ken C Pang; Timothy R Mercer; Marcel Dinger; John S Mattick
Journal:  J Pathol       Date:  2010-01       Impact factor: 7.996

8.  Construction of folate-conjugated pRNA of bacteriophage phi29 DNA packaging motor for delivery of chimeric siRNA to nasopharyngeal carcinoma cells.

Authors:  S Guo; F Huang; P Guo
Journal:  Gene Ther       Date:  2006-05       Impact factor: 5.250

9.  AFM for analysis of structure and dynamics of DNA and protein-DNA complexes.

Authors:  Yuri L Lyubchenko; Luda S Shlyakhtenko
Journal:  Methods       Date:  2008-10-07       Impact factor: 3.608

10.  Targeted delivery of anti-coxsackievirus siRNAs using ligand-conjugated packaging RNAs.

Authors:  Huifang M Zhang; Yue Su; Songchuan Guo; Ji Yuan; Travis Lim; Jing Liu; Peixuan Guo; Decheng Yang
Journal:  Antiviral Res       Date:  2009-07-16       Impact factor: 5.970

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  48 in total

Review 1.  Beyond DNA and RNA: The Expanding Toolbox of Synthetic Genetics.

Authors:  Alexander I Taylor; Gillian Houlihan; Philipp Holliger
Journal:  Cold Spring Harb Perspect Biol       Date:  2019-06-03       Impact factor: 10.005

2.  Hydrophobic Effect from Conjugated Chemicals or Drugs on In Vivo Biodistribution of RNA Nanoparticles.

Authors:  Daniel L Jasinski; Hongran Yin; Zhefeng Li; Peixuan Guo
Journal:  Hum Gene Ther       Date:  2017-10-12       Impact factor: 5.695

3.  One-Pot Production of RNA Nanoparticles via Automated Processing and Self-Assembly.

Authors:  Daniel L Jasinski; Daniel W Binzel; Peixuan Guo
Journal:  ACS Nano       Date:  2019-03-22       Impact factor: 15.881

4.  Fluorogenic RNA nanoparticles for monitoring RNA folding and degradation in real time in living cells.

Authors:  Randall Reif; Farzin Haque; Peixuan Guo
Journal:  Nucleic Acid Ther       Date:  2012-10-31       Impact factor: 5.486

Review 5.  Uniqueness, advantages, challenges, solutions, and perspectives in therapeutics applying RNA nanotechnology.

Authors:  Peixuan Guo; Farzin Haque; Brent Hallahan; Randall Reif; Hui Li
Journal:  Nucleic Acid Ther       Date:  2012-08       Impact factor: 5.486

6.  RNA aptamers and their therapeutic and diagnostic applications.

Authors:  Katherine Germer; Marissa Leonard; Xiaoting Zhang
Journal:  Int J Biochem Mol Biol       Date:  2013-03-31

7.  Ultrastable synergistic tetravalent RNA nanoparticles for targeting to cancers.

Authors:  Farzin Haque; Dan Shu; Yi Shu; Luda S Shlyakhtenko; Piotr G Rychahou; B Mark Evers; Peixuan Guo
Journal:  Nano Today       Date:  2012-08       Impact factor: 20.722

8.  Overcoming Tamoxifen Resistance of Human Breast Cancer by Targeted Gene Silencing Using Multifunctional pRNA Nanoparticles.

Authors:  Yijuan Zhang; Marissa Leonard; Yi Shu; Yongguang Yang; Dan Shu; Peixuan Guo; Xiaoting Zhang
Journal:  ACS Nano       Date:  2016-12-16       Impact factor: 15.881

9.  Ocular delivery of pRNA nanoparticles: distribution and clearance after subconjunctival injection.

Authors:  Liang Feng; S Kevin Li; Hongshan Liu; Chia-Yang Liu; Kathleen LaSance; Farzin Haque; Dan Shu; Peixuan Guo
Journal:  Pharm Res       Date:  2013-12-03       Impact factor: 4.200

10.  Nanolayered siRNA dressing for sustained localized knockdown.

Authors:  Steven Castleberry; Mary Wang; Paula T Hammond
Journal:  ACS Nano       Date:  2013-05-17       Impact factor: 15.881

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