Literature DB >> 22811290

Current trends in α-helical membrane protein crystallization: an update.

Joanne L Parker1, Simon Newstead.   

Abstract

α-Helical membrane proteins (MPs) are the targets for many pharmaceutical drugs and play important roles in human physiology. In recent years, significant progress has been made in determining their atomic structure using X-ray crystallography. However, a major bottleneck in MP crystallography still remains, namely, the identification of conditions that give crystals that are suitable for structural determination. In 2008, we undertook an analysis of the crystallization conditions for 121 α-helical MPs to design a rationalized sparse matrix crystallization screen, MemGold. We now report an updated analysis that includes a further 133 conditions. The results reveal the current trends in α-helical MP crystallization with notable differences since 2008. The updated information has been used to design new crystallization and additive screens that should prove useful for both initial crystallization scouting and subsequent crystal optimization.
Copyright © 2012 The Protein Society.

Entities:  

Mesh:

Substances:

Year:  2012        PMID: 22811290      PMCID: PMC3631364          DOI: 10.1002/pro.2122

Source DB:  PubMed          Journal:  Protein Sci        ISSN: 0961-8368            Impact factor:   6.725


  24 in total

1.  Structures of the CXCR4 chemokine GPCR with small-molecule and cyclic peptide antagonists.

Authors:  Beili Wu; Ellen Y T Chien; Clifford D Mol; Gustavo Fenalti; Wei Liu; Vsevolod Katritch; Ruben Abagyan; Alexei Brooun; Peter Wells; F Christopher Bi; Damon J Hamel; Peter Kuhn; Tracy M Handel; Vadim Cherezov; Raymond C Stevens
Journal:  Science       Date:  2010-10-07       Impact factor: 47.728

2.  Screening and optimization strategies for macromolecular crystal growth.

Authors:  R Cudney; S Patel; K Weisgraber; Y Newhouse; A McPherson
Journal:  Acta Crystallogr D Biol Crystallogr       Date:  1994-07-01

3.  Novel buffer systems for macromolecular crystallization.

Authors:  Janet Newman
Journal:  Acta Crystallogr D Biol Crystallogr       Date:  2004-02-25

4.  Diffraction cartography: applying microbeams to macromolecular crystallography sample evaluation and data collection.

Authors:  Matthew W Bowler; Matias Guijarro; Sebastien Petitdemange; Isabel Baker; Olof Svensson; Manfred Burghammer; Christoph Mueller-Dieckmann; Elspeth J Gordon; David Flot; Sean M McSweeney; Gordon A Leonard
Journal:  Acta Crystallogr D Biol Crystallogr       Date:  2010-07-09

Review 5.  Tricks of the trade used to accelerate high-resolution structure determination of membrane proteins.

Authors:  Yo Sonoda; Alex Cameron; Simon Newstead; Hiroshi Omote; Yoshinori Moriyama; Michihiro Kasahara; So Iwata; David Drew
Journal:  FEBS Lett       Date:  2010-04-13       Impact factor: 4.124

6.  Structure of the human dopamine D3 receptor in complex with a D2/D3 selective antagonist.

Authors:  Ellen Y T Chien; Wei Liu; Qiang Zhao; Vsevolod Katritch; Gye Won Han; Michael A Hanson; Lei Shi; Amy Hauck Newman; Jonathan A Javitch; Vadim Cherezov; Raymond C Stevens
Journal:  Science       Date:  2010-11-19       Impact factor: 47.728

7.  Comparison of seven different heterologous protein expression systems for the production of the serotonin transporter.

Authors:  Christopher G Tate; Jana Haase; Cara Baker; Marco Boorsma; Francesca Magnani; Yvonne Vallis; D Clive Williams
Journal:  Biochim Biophys Acta       Date:  2003-02-17

Review 8.  Lipidic cubic phase technologies for membrane protein structural studies.

Authors:  Vadim Cherezov
Journal:  Curr Opin Struct Biol       Date:  2011-07-19       Impact factor: 6.809

9.  Maltose-neopentyl glycol (MNG) amphiphiles for solubilization, stabilization and crystallization of membrane proteins.

Authors:  Pil Seok Chae; Søren G F Rasmussen; Rohini R Rana; Kamil Gotfryd; Richa Chandra; Michael A Goren; Andrew C Kruse; Shailika Nurva; Claus J Loland; Yves Pierre; David Drew; Jean-Luc Popot; Daniel Picot; Brian G Fox; Lan Guan; Ulrik Gether; Bernadette Byrne; Brian Kobilka; Samuel H Gellman
Journal:  Nat Methods       Date:  2010-10-31       Impact factor: 28.547

10.  Benchmarking membrane protein detergent stability for improving throughput of high-resolution X-ray structures.

Authors:  Yo Sonoda; Simon Newstead; Nien-Jen Hu; Yilmaz Alguel; Emmanuel Nji; Konstantinos Beis; Shoko Yashiro; Chiara Lee; James Leung; Alexander D Cameron; Bernadette Byrne; So Iwata; David Drew
Journal:  Structure       Date:  2011-01-12       Impact factor: 5.006

View more
  33 in total

1.  Phasing statistics for alpha helical membrane protein structures.

Authors:  Joanne L Parker; Simon Newstead
Journal:  Protein Sci       Date:  2013-09-17       Impact factor: 6.725

Review 2.  Membrane proteins, detergents and crystals: what is the state of the art?

Authors:  Patrick J Loll
Journal:  Acta Crystallogr F Struct Biol Commun       Date:  2014-11-28       Impact factor: 1.056

3.  A drunken search in crystallization space.

Authors:  Vincent J Fazio; Thomas S Peat; Janet Newman
Journal:  Acta Crystallogr F Struct Biol Commun       Date:  2014-09-30       Impact factor: 1.056

4.  New penta-saccharide-bearing tripod amphiphiles for membrane protein structure studies.

Authors:  Muhammad Ehsan; Lubna Ghani; Yang Du; Parameswaran Hariharan; Jonas S Mortensen; Orquidea Ribeiro; Hongli Hu; Georgios Skiniotis; Claus J Loland; Lan Guan; Brian K Kobilka; Bernadette Byrne; Pil Seok Chae
Journal:  Analyst       Date:  2017-10-09       Impact factor: 4.616

5.  Human CaaX protease ZMPSTE24 expressed in yeast: Structure and inhibition by HIV protease inhibitors.

Authors:  Kathleen M Clark; Jermaine L Jenkins; Nadia Fedoriw; Mark E Dumont
Journal:  Protein Sci       Date:  2016-11-11       Impact factor: 6.725

6.  Diastereomeric Cyclopentane-Based Maltosides (CPMs) as Tools for Membrane Protein Study.

Authors:  Manabendra Das; Florian Mahler; Parameswaran Hariharan; Haoqing Wang; Yang Du; Jonas S Mortensen; Eugenio Pérez Patallo; Lubna Ghani; David Glück; Ho Jin Lee; Bernadette Byrne; Claus J Loland; Lan Guan; Brian K Kobilka; Sandro Keller; Pil Seok Chae
Journal:  J Am Chem Soc       Date:  2020-12-14       Impact factor: 15.419

7.  1,3,5-Triazine-Cored Maltoside Amphiphiles for Membrane Protein Extraction and Stabilization.

Authors:  Lubna Ghani; Chastine F Munk; Xiang Zhang; Satoshi Katsube; Yang Du; Cristina Cecchetti; Weijiao Huang; Hyoung Eun Bae; Savvas Saouros; Muhammad Ehsan; Lan Guan; Xiangyu Liu; Claus J Loland; Brian K Kobilka; Bernadette Byrne; Pil Seok Chae
Journal:  J Am Chem Soc       Date:  2019-12-06       Impact factor: 15.419

8.  Steroid-Based Amphiphiles for Membrane Protein Study: The Importance of Alkyl Spacers for Protein Stability.

Authors:  Muhammad Ehsan; Manabendra Das; Valerie Stern; Yang Du; Jonas S Mortensen; Parameswaran Hariharan; Bernadette Byrne; Claus J Loland; Brian K Kobilka; Lan Guan; Pil Seok Chae
Journal:  Chembiochem       Date:  2018-05-29       Impact factor: 3.164

9.  Conformationally Restricted Monosaccharide-Cored Glycoside Amphiphiles: The Effect of Detergent Headgroup Variation on Membrane Protein Stability.

Authors:  Aiman Sadaf; Manuel Ramos; Jonas S Mortensen; Yang Du; Hyoung Eun Bae; Chastine F Munk; Parameswaran Hariharan; Bernadette Byrne; Brian K Kobilka; Claus J Loland; Lan Guan; Pil Seok Chae
Journal:  ACS Chem Biol       Date:  2019-07-29       Impact factor: 5.100

10.  An Improved Strategy for Fluorescent Tagging of Membrane Proteins for Overexpression and Purification in Mammalian Cells.

Authors:  Mitra S Rana; Xiyu Wang; Anirban Banerjee
Journal:  Biochemistry       Date:  2018-11-27       Impact factor: 3.162

View more

北京卡尤迪生物科技股份有限公司 © 2022-2023.