Literature DB >> 20394746

Tricks of the trade used to accelerate high-resolution structure determination of membrane proteins.

Yo Sonoda1, Alex Cameron, Simon Newstead, Hiroshi Omote, Yoshinori Moriyama, Michihiro Kasahara, So Iwata, David Drew.   

Abstract

The rate at which X-ray structures of membrane proteins are solved is on a par with that of soluble proteins in the late 1970s. There are still many obstacles facing the membrane protein structural community. Recently, there have been several technical achievements in the field that have started to dramatically accelerate structural studies. Here, we summarize these so-called 'tricks-of-the-trade' and include case studies of several mammalian transporters. Copyright 2010. Published by Elsevier B.V.

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Year:  2010        PMID: 20394746     DOI: 10.1016/j.febslet.2010.04.015

Source DB:  PubMed          Journal:  FEBS Lett        ISSN: 0014-5793            Impact factor:   4.124


  13 in total

1.  Phasing statistics for alpha helical membrane protein structures.

Authors:  Joanne L Parker; Simon Newstead
Journal:  Protein Sci       Date:  2013-09-17       Impact factor: 6.725

2.  Membrane protein stability can be compromised by detergent interactions with the extramembranous soluble domains.

Authors:  Zhengrong Yang; Chi Wang; Qingxian Zhou; Jianli An; Ellen Hildebrandt; Luba A Aleksandrov; John C Kappes; Lawrence J DeLucas; John R Riordan; Ina L Urbatsch; John F Hunt; Christie G Brouillette
Journal:  Protein Sci       Date:  2014-05-03       Impact factor: 6.725

3.  Current trends in α-helical membrane protein crystallization: an update.

Authors:  Joanne L Parker; Simon Newstead
Journal:  Protein Sci       Date:  2012-08-10       Impact factor: 6.725

4.  Methods for Structural and Functional Analyses of Intramembrane Prenyltransferases in the UbiA Superfamily.

Authors:  Y Yang; N Ke; S Liu; W Li
Journal:  Methods Enzymol       Date:  2016-12-07       Impact factor: 1.600

5.  High-throughput cell-free screening of eukaryotic membrane protein expression in lipidic mimetics.

Authors:  Renato Bruni; Aisha Laguerre; Anna-Maria Kaminska; Sean McSweeney; Wayne A Hendrickson; Qun Liu
Journal:  Protein Sci       Date:  2021-12-23       Impact factor: 6.725

Review 6.  Structure-function studies with G protein-coupled receptors as a paradigm for improving drug discovery and development of therapeutics.

Authors:  Patrick M McNeely; Andrea N Naranjo; Anne S Robinson
Journal:  Biotechnol J       Date:  2012-12       Impact factor: 4.677

7.  Benchmarking membrane protein detergent stability for improving throughput of high-resolution X-ray structures.

Authors:  Yo Sonoda; Simon Newstead; Nien-Jen Hu; Yilmaz Alguel; Emmanuel Nji; Konstantinos Beis; Shoko Yashiro; Chiara Lee; James Leung; Alexander D Cameron; Bernadette Byrne; So Iwata; David Drew
Journal:  Structure       Date:  2011-01-12       Impact factor: 5.006

8.  Saccharomyces cerevisiae-based platform for rapid production and evaluation of eukaryotic nutrient transporters and transceptors for biochemical studies and crystallography.

Authors:  Peter Scharff-Poulsen; Per Amstrup Pedersen
Journal:  PLoS One       Date:  2013-10-04       Impact factor: 3.240

9.  Crystallization and preliminary X-ray diffraction analysis of YidC, a membrane-protein chaperone and insertase from Bacillus halodurans.

Authors:  Kaoru Kumazaki; Tomoya Tsukazaki; Tomohiro Nishizawa; Yoshiki Tanaka; Hideaki E Kato; Yoshiko Nakada-Nakura; Kunio Hirata; Yoshihiro Mori; Hiroaki Suga; Naoshi Dohmae; Ryuichiro Ishitani; Osamu Nureki
Journal:  Acta Crystallogr F Struct Biol Commun       Date:  2014-07-23       Impact factor: 1.056

10.  Structure and mechanism of the mammalian fructose transporter GLUT5.

Authors:  Norimichi Nomura; Grégory Verdon; Hae Joo Kang; Tatsuro Shimamura; Yayoi Nomura; Yo Sonoda; Saba Abdul Hussien; Aziz Abdul Qureshi; Mathieu Coincon; Yumi Sato; Hitomi Abe; Yoshiko Nakada-Nakura; Tomoya Hino; Takatoshi Arakawa; Osamu Kusano-Arai; Hiroko Iwanari; Takeshi Murata; Takuya Kobayashi; Takao Hamakubo; Michihiro Kasahara; So Iwata; David Drew
Journal:  Nature       Date:  2015-09-30       Impact factor: 49.962

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