Literature DB >> 23963889

Phasing statistics for alpha helical membrane protein structures.

Joanne L Parker1, Simon Newstead.   

Abstract

In this report we highlight the latest trends in phasing methods used to solve alpha helical membrane protein structures and analyze the use of heavy atom metals for the purpose of experimental phasing. Our results reveal that molecular replacement is emerging as the most successful method for phasing alpha helical membrane proteins, with the notable exception of the transporter family, where experimentally derived phase information still remains the most effective method. To facilitate selection of heavy atoms salts for experimental phasing an analysis of these was undertaken and indicates that organic mercury salts are still the most successful heavy atoms reagents. Interestingly the use of seleno-L-methionine incorporated protein has increased since earlier studies into membrane protein phasing, so too the use of SAD and MAD as techniques for phase determination. Taken together this study provides a brief snapshot of phasing methods for alpha helical membrane proteins and suggests possible routes for heavy atom selection and phasing methods based on currently available data.
© 2013 The Protein Society.

Entities:  

Keywords:  alpha helical membrane proteins; phasing; protein crystallography

Mesh:

Substances:

Year:  2013        PMID: 23963889      PMCID: PMC3831681          DOI: 10.1002/pro.2341

Source DB:  PubMed          Journal:  Protein Sci        ISSN: 0961-8368            Impact factor:   6.725


  24 in total

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Authors:  Stephen H White
Journal:  Protein Sci       Date:  2004-07       Impact factor: 6.725

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Authors:  Simon Newstead; Sébastien Ferrandon; So Iwata
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5.  Membrane's Eleven: heavy-atom derivatives of membrane-protein crystals.

Authors:  J Preben Morth; Thomas Lykke Møller Sørensen; Poul Nissen
Journal:  Acta Crystallogr D Biol Crystallogr       Date:  2006-07-18

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Journal:  Nature       Date:  2007-10-21       Impact factor: 49.962

Review 8.  G-protein-coupled receptor structures were not built in a day.

Authors:  Tracy M Blois; James U Bowie
Journal:  Protein Sci       Date:  2009-07       Impact factor: 6.725

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Authors:  Yiling Fang; Hariharan Jayaram; Tania Shane; Ludmila Kolmakova-Partensky; Fang Wu; Carole Williams; Yong Xiong; Christopher Miller
Journal:  Nature       Date:  2009-07-05       Impact factor: 49.962

10.  Protein crystallography with a micrometre-sized synchrotron-radiation beam.

Authors:  Rouslan Moukhametzianov; Manfred Burghammer; Patricia C Edwards; Sebastien Petitdemange; Dimitri Popov; Maikel Fransen; Gregory McMullan; Gebhard F X Schertler; Christian Riekel
Journal:  Acta Crystallogr D Biol Crystallogr       Date:  2008-01-16
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  3 in total

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Authors:  Dianfan Li; Valerie E Pye; Martin Caffrey
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Review 2.  An overview of heavy-atom derivatization of protein crystals.

Authors:  Ashley C W Pike; Elspeth F Garman; Tobias Krojer; Frank von Delft; Elisabeth P Carpenter
Journal:  Acta Crystallogr D Struct Biol       Date:  2016-03-01       Impact factor: 7.652

3.  Fibril Structure Demonstrates the Role of Iodine Labelling on a Pentapeptide Self-Assembly.

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Journal:  Chemistry       Date:  2022-02-17       Impact factor: 5.020

  3 in total

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