Literature DB >> 21946159

Applications of genetically-encoded biosensors for the construction and control of biosynthetic pathways.

Joshua K Michener1, Kate Thodey, Joe C Liang, Christina D Smolke.   

Abstract

Cells are filled with biosensors, molecular systems that measure the state of the cell and respond by regulating host processes. In much the same way that an engineer would monitor a chemical reactor, the cell uses these sensors to monitor changing intracellular environments and produce consistent behavior despite the variable environment. While natural systems derive a clear benefit from pathway regulation, past research efforts in engineering cellular metabolism have focused on introducing new pathways and removing existing pathway regulation. Synthetic biology is a rapidly growing field that focuses on the development of new tools that support the design, construction, and optimization of biological systems. Recent advances have been made in the design of genetically-encoded biosensors and the application of this class of molecular tools for optimizing and regulating heterologous pathways. Biosensors to cellular metabolites can be taken directly from natural systems, engineered from natural sensors, or constructed entirely in vitro. When linked to reporters, such as antibiotic resistance markers, these metabolite sensors can be used to report on pathway productivity, allowing high-throughput screening for pathway optimization. Future directions will focus on the application of biosensors to introduce feedback control into metabolic pathways, providing dynamic control strategies to increase the efficient use of cellular resources and pathway reliability.
Copyright © 2011 Elsevier Inc. All rights reserved.

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Year:  2011        PMID: 21946159      PMCID: PMC3256257          DOI: 10.1016/j.ymben.2011.09.004

Source DB:  PubMed          Journal:  Metab Eng        ISSN: 1096-7176            Impact factor:   9.783


  75 in total

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Journal:  Nat Rev Mol Cell Biol       Date:  2004-06       Impact factor: 94.444

2.  Correlation between catalytic efficiency and the transcription read-out in chemical complementation: a general assay for enzyme catalysis.

Authors:  Debleena Sengupta; Hening Lin; Shalom D Goldberg; Jacqueline J Mahal; Virginia W Cornish
Journal:  Biochemistry       Date:  2004-03-30       Impact factor: 3.162

3.  Improved aptazyme design and in vivo screening enable riboswitching in bacteria.

Authors:  Markus Wieland; Jörg S Hartig
Journal:  Angew Chem Int Ed Engl       Date:  2008       Impact factor: 15.336

4.  Engineering complex riboswitch regulation by dual genetic selection.

Authors:  Vandana Sharma; Yoko Nomura; Yohei Yokobayashi
Journal:  J Am Chem Soc       Date:  2008-12-03       Impact factor: 15.419

5.  Dynamic imaging of glucose flux impedance using FRET sensors in wild-type Arabidopsis plants.

Authors:  Bhavna Chaudhuri; Friederike Hörmann; Wolf B Frommer
Journal:  J Exp Bot       Date:  2011-01-25       Impact factor: 6.992

6.  Informing biological design by integration of systems and synthetic biology.

Authors:  Christina D Smolke; Pamela A Silver
Journal:  Cell       Date:  2011-03-18       Impact factor: 41.582

7.  Dual selection enhances the signaling specificity of a variant of the quorum-sensing transcriptional activator LuxR.

Authors:  Cynthia H Collins; Jared R Leadbetter; Frances H Arnold
Journal:  Nat Biotechnol       Date:  2006-05-21       Impact factor: 54.908

8.  A model for improving microbial biofuel production using a synthetic feedback loop.

Authors:  Mary J Dunlop; Jay D Keasling; Aindrila Mukhopadhyay
Journal:  Syst Synth Biol       Date:  2010-02-25

9.  Total biosynthesis of hydrocortisone from a simple carbon source in yeast.

Authors:  Florence Ménard Szczebara; Cathy Chandelier; Coralie Villeret; Amélie Masurel; Stéphane Bourot; Catherine Duport; Sophie Blanchard; Agnès Groisillier; Eric Testet; Patricia Costaglioli; Gilles Cauet; Eric Degryse; David Balbuena; Jacques Winter; Tilman Achstetter; Roberto Spagnoli; Denis Pompon; Bruno Dumas
Journal:  Nat Biotechnol       Date:  2003-01-06       Impact factor: 54.908

10.  Surveying biotransformations with à la carte genetic traps: translating dehydrochlorination of lindane (gamma-hexachlorocyclohexane) into lacZ-based phenotypes.

Authors:  William W Mohn; Junkal Garmendia; Teca C Galvao; Víctor de Lorenzo
Journal:  Environ Microbiol       Date:  2006-03       Impact factor: 5.491

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  41 in total

1.  Microbial engineering for the production of advanced biofuels.

Authors:  Pamela P Peralta-Yahya; Fuzhong Zhang; Stephen B del Cardayre; Jay D Keasling
Journal:  Nature       Date:  2012-08-16       Impact factor: 49.962

2.  Tools and systems for evolutionary engineering of biomolecules and microorganisms.

Authors:  Sungho Jang; Minsun Kim; Jaeseong Hwang; Gyoo Yeol Jung
Journal:  J Ind Microbiol Biotechnol       Date:  2019-05-27       Impact factor: 3.346

3.  Development of novel metabolite-responsive transcription factors via transposon-mediated protein fusion.

Authors:  Andrew K D Younger; Peter Y Su; Andrea J Shepard; Shreya V Udani; Thaddeus R Cybulski; Keith E J Tyo; Joshua N Leonard
Journal:  Protein Eng Des Sel       Date:  2018-02-01       Impact factor: 1.650

Review 4.  Precision metabolic engineering: The design of responsive, selective, and controllable metabolic systems.

Authors:  Monica P McNerney; Daniel M Watstein; Mark P Styczynski
Journal:  Metab Eng       Date:  2015-07-17       Impact factor: 9.783

Review 5.  Synthetic biology to access and expand nature's chemical diversity.

Authors:  Michael J Smanski; Hui Zhou; Jan Claesen; Ben Shen; Michael A Fischbach; Christopher A Voigt
Journal:  Nat Rev Microbiol       Date:  2016-03       Impact factor: 60.633

Review 6.  Synthetic biology: advancing the design of diverse genetic systems.

Authors:  Yen-Hsiang Wang; Kathy Y Wei; Christina D Smolke
Journal:  Annu Rev Chem Biomol Eng       Date:  2013-02-13       Impact factor: 11.059

7.  Automated physics-based design of synthetic riboswitches from diverse RNA aptamers.

Authors:  Amin Espah Borujeni; Dennis M Mishler; Jingzhi Wang; Walker Huso; Howard M Salis
Journal:  Nucleic Acids Res       Date:  2015-11-30       Impact factor: 16.971

Review 8.  Dynamic metabolic engineering: New strategies for developing responsive cell factories.

Authors:  Irene M Brockman; Kristala L J Prather
Journal:  Biotechnol J       Date:  2015-04-13       Impact factor: 4.677

Review 9.  Molecular tools for chemical biotechnology.

Authors:  Stephanie Galanie; Michael S Siddiqui; Christina D Smolke
Journal:  Curr Opin Biotechnol       Date:  2013-03-23       Impact factor: 9.740

10.  Synthetic RNA switches for yeast metabolic engineering: screening recombinant enzyme libraries.

Authors:  Joshua K Michener; Christina D Smolke
Journal:  Methods Mol Biol       Date:  2014
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