Literature DB >> 23528237

Molecular tools for chemical biotechnology.

Stephanie Galanie1, Michael S Siddiqui, Christina D Smolke.   

Abstract

Biotechnological production of high value chemical products increasingly involves engineering in vivo multi-enzyme pathways and host metabolism. Recent approaches to these engineering objectives have made use of molecular tools to advance de novo pathway identification, tunable enzyme expression, and rapid pathway construction. Molecular tools also enable optimization of single enzymes and entire genomes through diversity generation and screening, whole cell analytics, and synthetic metabolic control networks. In this review, we focus on advanced molecular tools and their applications to engineered pathways in host organisms, highlighting the degree to which each tool is generalizable.
Copyright © 2013 Elsevier Ltd. All rights reserved.

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Year:  2013        PMID: 23528237      PMCID: PMC3740197          DOI: 10.1016/j.copbio.2013.03.001

Source DB:  PubMed          Journal:  Curr Opin Biotechnol        ISSN: 0958-1669            Impact factor:   9.740


  73 in total

1.  Model-driven engineering of RNA devices to quantitatively program gene expression.

Authors:  James M Carothers; Jonathan A Goler; Darmawi Juminaga; Jay D Keasling
Journal:  Science       Date:  2011-12-23       Impact factor: 47.728

2.  The KEGG databases and tools facilitating omics analysis: latest developments involving human diseases and pharmaceuticals.

Authors:  Masaaki Kotera; Mika Hirakawa; Toshiaki Tokimatsu; Susumu Goto; Minoru Kanehisa
Journal:  Methods Mol Biol       Date:  2012

3.  Harnessing recombination to speed adaptive evolution in Escherichia coli.

Authors:  James Winkler; Katy C Kao
Journal:  Metab Eng       Date:  2012-07-27       Impact factor: 9.783

Review 4.  Applications of genetically-encoded biosensors for the construction and control of biosynthetic pathways.

Authors:  Joshua K Michener; Kate Thodey; Joe C Liang; Christina D Smolke
Journal:  Metab Eng       Date:  2011-09-18       Impact factor: 9.783

5.  Metabolic engineering of Escherichia coli for direct production of 1,4-butanediol.

Authors:  Harry Yim; Robert Haselbeck; Wei Niu; Catherine Pujol-Baxley; Anthony Burgard; Jeff Boldt; Julia Khandurina; John D Trawick; Robin E Osterhout; Rosary Stephen; Jazell Estadilla; Sy Teisan; H Brett Schreyer; Stefan Andrae; Tae Hoon Yang; Sang Yup Lee; Mark J Burk; Stephen Van Dien
Journal:  Nat Chem Biol       Date:  2011-05-22       Impact factor: 15.040

6.  Reiterative Recombination for the in vivo assembly of libraries of multigene pathways.

Authors:  Laura M Wingler; Virginia W Cornish
Journal:  Proc Natl Acad Sci U S A       Date:  2011-08-26       Impact factor: 11.205

7.  A model for improving microbial biofuel production using a synthetic feedback loop.

Authors:  Mary J Dunlop; Jay D Keasling; Aindrila Mukhopadhyay
Journal:  Syst Synth Biol       Date:  2010-02-25

8.  Enhancing sesquiterpene production in Saccharomyces cerevisiae through in silico driven metabolic engineering.

Authors:  Mohammad A Asadollahi; Jérôme Maury; Kiran Raosaheb Patil; Michel Schalk; Anthony Clark; Jens Nielsen
Journal:  Metab Eng       Date:  2009-07-18       Impact factor: 9.783

9.  Design, construction and characterization of a set of insulated bacterial promoters.

Authors:  Joseph H Davis; Adam J Rubin; Robert T Sauer
Journal:  Nucleic Acids Res       Date:  2010-09-15       Impact factor: 16.971

10.  DNA assembler, an in vivo genetic method for rapid construction of biochemical pathways.

Authors:  Zengyi Shao; Hua Zhao; Huimin Zhao
Journal:  Nucleic Acids Res       Date:  2008-12-12       Impact factor: 16.971

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  2 in total

Review 1.  Cell-free metabolic engineering: biomanufacturing beyond the cell.

Authors:  Quentin M Dudley; Ashty S Karim; Michael C Jewett
Journal:  Biotechnol J       Date:  2014-10-15       Impact factor: 4.677

2.  Production of the forskolin precursor 11β-hydroxy-manoyl oxide in yeast using surrogate enzymatic activities.

Authors:  Codruta Ignea; Efstathia Ioannou; Panagiota Georgantea; Fotini A Trikka; Anastasia Athanasakoglou; Sofia Loupassaki; Vassilios Roussis; Antonios M Makris; Sotirios C Kampranis
Journal:  Microb Cell Fact       Date:  2016-02-26       Impact factor: 5.328

  2 in total

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