Literature DB >> 31134415

Tools and systems for evolutionary engineering of biomolecules and microorganisms.

Sungho Jang1, Minsun Kim2, Jaeseong Hwang2, Gyoo Yeol Jung3,4.   

Abstract

Evolutionary approaches have been providing solutions to various bioengineering challenges in an efficient manner. In addition to traditional adaptive laboratory evolution and directed evolution, recent advances in synthetic biology and fluidic systems have opened a new era of evolutionary engineering. Synthetic genetic circuits have been created to control mutagenesis and enable screening of various phenotypes, particularly metabolite production. Fluidic systems can be used for high-throughput screening and multiplexed continuous cultivation of microorganisms. Moreover, continuous directed evolution has been achieved by combining all the steps of evolutionary engineering. Overall, modern tools and systems for evolutionary engineering can be used to establish the artificial equivalent to natural evolution for various research applications.

Keywords:  Continuous evolution; Evolutionary engineering; High-throughput screening; Mutagenesis; Selection

Year:  2019        PMID: 31134415     DOI: 10.1007/s10295-019-02191-5

Source DB:  PubMed          Journal:  J Ind Microbiol Biotechnol        ISSN: 1367-5435            Impact factor:   3.346


  101 in total

Review 1.  Combinatorial protein design: strategies for screening protein libraries.

Authors:  H Zhao; F H Arnold
Journal:  Curr Opin Struct Biol       Date:  1997-08       Impact factor: 6.809

2.  Directed evolution of a formate dehydrogenase for increased tolerance to ionic liquids reveals a new site for increasing the stability.

Authors:  Julie L L Carter; Mourad Bekhouche; Alexandre Noiriel; Loïc J Blum; Bastien Doumèche
Journal:  Chembiochem       Date:  2014-10-24       Impact factor: 3.164

3.  Increased production of L-serine in Escherichia coli through Adaptive Laboratory Evolution.

Authors:  Hemanshu Mundhada; Jose M Seoane; Konstantin Schneider; Anna Koza; Hanne B Christensen; Tobias Klein; Patrick V Phaneuf; Markus Herrgard; Adam M Feist; Alex T Nielsen
Journal:  Metab Eng       Date:  2016-11-29       Impact factor: 9.783

4.  Exploiting nongenetic cell-to-cell variation for enhanced biosynthesis.

Authors:  Yi Xiao; Christopher H Bowen; Di Liu; Fuzhong Zhang
Journal:  Nat Chem Biol       Date:  2016-03-21       Impact factor: 15.040

5.  A Processive Protein Chimera Introduces Mutations across Defined DNA Regions In Vivo.

Authors:  Christopher L Moore; Louis J Papa; Matthew D Shoulders
Journal:  J Am Chem Soc       Date:  2018-07-18       Impact factor: 15.419

6.  Targeted gene evolution in Escherichia coli using a highly error-prone DNA polymerase I.

Authors:  Manel Camps; Jussi Naukkarinen; Ben P Johnson; Lawrence A Loeb
Journal:  Proc Natl Acad Sci U S A       Date:  2003-08-08       Impact factor: 11.205

7.  A system for the continuous directed evolution of biomolecules.

Authors:  Kevin M Esvelt; Jacob C Carlson; David R Liu
Journal:  Nature       Date:  2011-04-10       Impact factor: 49.962

8.  Developing a high-throughput screening method for threonine overproduction based on an artificial promoter.

Authors:  Ya'nan Liu; Qinggang Li; Ping Zheng; Zhidan Zhang; Yongfei Liu; Cunmin Sun; Guoqiang Cao; Wenjuan Zhou; Xiaowei Wang; Dawei Zhang; Tongcun Zhang; Jibin Sun; Yanhe Ma
Journal:  Microb Cell Fact       Date:  2015-08-22       Impact factor: 5.328

9.  In vivo continuous evolution of genes and pathways in yeast.

Authors:  Nathan Crook; Joseph Abatemarco; Jie Sun; James M Wagner; Alexander Schmitz; Hal S Alper
Journal:  Nat Commun       Date:  2016-10-17       Impact factor: 14.919

10.  CRMAGE: CRISPR Optimized MAGE Recombineering.

Authors:  Carlotta Ronda; Lasse Ebdrup Pedersen; Morten O A Sommer; Alex Toftgaard Nielsen
Journal:  Sci Rep       Date:  2016-01-22       Impact factor: 4.379

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  3 in total

Review 1.  Methods for the directed evolution of biomolecular interactions.

Authors:  Victoria Cochran Xie; Matthew J Styles; Bryan C Dickinson
Journal:  Trends Biochem Sci       Date:  2022-05       Impact factor: 14.264

2.  Auxotrophic Selection Strategy for Improved Production of Coenzyme B12 in Escherichia coli.

Authors:  Myung Hyun Noh; Hyun Gyu Lim; Daeyeong Moon; Sunghoon Park; Gyoo Yeol Jung
Journal:  iScience       Date:  2020-02-07

3.  In vivo, in vitro and in silico: an open space for the development of microbe-based applications of synthetic biology.

Authors:  Antoine Danchin
Journal:  Microb Biotechnol       Date:  2021-09-27       Impact factor: 5.813

  3 in total

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