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Literature DB >> 21414477

Informing biological design by integration of systems and synthetic biology.

Abstract

Synthetic biology aims to make the engineering of biology faster and more predictable. In contrast, systems biology focuses on the interaction of myriad components and how these give rise to the dynamic and complex behavior of biological systems. Here, we examine the synergies between these two fields.

Entities: Chemical Gene Species

Mesh：

Year: 2011 PMID： 21414477 PMCID： PMC3173940 DOI： 10.1016/j.cell.2011.02.020

Source DB: PubMed Journal: Cell ISSN： 0092-8674 Impact factor: 41.582

31 in total

1. Construction of a genetic toggle switch in Escherichia coli.

Authors: T S Gardner; C R Cantor; J J Collins
Journal: Nature Date: 2000-01-20 Impact factor: 49.962

Review 2. Reconstruction of genetic circuits.

Authors: David Sprinzak; Michael B Elowitz
Journal: Nature Date: 2005-11-24 Impact factor: 49.962

Review 3. The second wave of synthetic biology: from modules to systems.

Authors: Priscilla E M Purnick; Ron Weiss
Journal: Nat Rev Mol Cell Biol Date: 2009-06 Impact factor: 94.444

Review 4. Advancing high-throughput gene synthesis technology.

Authors: Jingdong Tian; Kuosheng Ma; Ishtiaq Saaem
Journal: Mol Biosyst Date: 2009-04-06

Review 5. Biomedical engineering strategies in system design space.

Authors: Michael A Savageau
Journal: Ann Biomed Eng Date: 2011-01-04 Impact factor: 3.934

6. Genetic control of mammalian T-cell proliferation with synthetic RNA regulatory systems.

Authors: Yvonne Y Chen; Michael C Jensen; Christina D Smolke
Journal: Proc Natl Acad Sci U S A Date: 2010-04-26 Impact factor: 11.205

7. A model for improving microbial biofuel production using a synthetic feedback loop.

Authors: Mary J Dunlop; Jay D Keasling; Aindrila Mukhopadhyay
Journal: Syst Synth Biol Date: 2010-02-25

8. Programming cells by multiplex genome engineering and accelerated evolution.

Authors: Harris H Wang; Farren J Isaacs; Peter A Carr; Zachary Z Sun; George Xu; Craig R Forest; George M Church
Journal: Nature Date: 2009-07-26 Impact factor: 49.962

Review 9. Directed evolution: new parts and optimized function.

Authors: Michael J Dougherty; Frances H Arnold
Journal: Curr Opin Biotechnol Date: 2009-08-31 Impact factor: 9.740

10. Diversity-based, model-guided construction of synthetic gene networks with predicted functions.

Authors: Tom Ellis; Xiao Wang; James J Collins
Journal: Nat Biotechnol Date: 2009-04-19 Impact factor: 54.908

22 in total

1. Scalable plasmid transfer using engineered P1-based phagemids.

Authors: Joshua T Kittleson; Will DeLoache; Hsiao-Ying Cheng; J Christopher Anderson
Journal: ACS Synth Biol Date: 2012-08-30 Impact factor: 5.110

2. Mechanistic links between cellular trade-offs, gene expression, and growth.

Authors: Andrea Y Weiße; Diego A Oyarzún; Vincent Danos; Peter S Swain
Journal: Proc Natl Acad Sci U S A Date: 2015-02-18 Impact factor: 11.205

Review 3. Cell-free synthetic biology: thinking outside the cell.

Authors: C Eric Hodgman; Michael C Jewett
Journal: Metab Eng Date: 2011-09-18 Impact factor: 9.783

Review 4. Applications of genetically-encoded biosensors for the construction and control of biosynthetic pathways.

Authors: Joshua K Michener; Kate Thodey; Joe C Liang; Christina D Smolke
Journal: Metab Eng Date: 2011-09-18 Impact factor: 9.783

Review 5. Realizing the potential of synthetic biology.

Authors: George M Church; Michael B Elowitz; Christina D Smolke; Christopher A Voigt; Ron Weiss
Journal: Nat Rev Mol Cell Biol Date: 2014-03-12 Impact factor: 94.444

6. Designing de novo: interdisciplinary debates in synthetic biology.

Authors: Ana Delgado; Manuel Porcar
Journal: Syst Synth Biol Date: 2013-04-09

Review 7. Biological production of L-malate: recent advances and future prospects.

Authors: Jingjing Liu; Jianghua Li; Hyun-Dong Shin; Guocheng Du; Jian Chen; Long Liu
Journal: World J Microbiol Biotechnol Date: 2017-12-06 Impact factor: 3.312

8. In vivo biosensors: mechanisms, development, and applications.

Authors: Shuobo Shi; Ee Lui Ang; Huimin Zhao
Journal: J Ind Microbiol Biotechnol Date: 2018-01-29 Impact factor: 3.346

Review 9. Engineering biological systems with synthetic RNA molecules.

Authors: Joe C Liang; Ryan J Bloom; Christina D Smolke
Journal: Mol Cell Date: 2011-09-16 Impact factor: 17.970

10. A synthetic biology framework for programming eukaryotic transcription functions.

Authors: Ahmad S Khalil; Timothy K Lu; Caleb J Bashor; Cherie L Ramirez; Nora C Pyenson; J Keith Joung; James J Collins
Journal: Cell Date: 2012-08-03 Impact factor: 41.582