Literature DB >> 23413816

Synthetic biology: advancing the design of diverse genetic systems.

Yen-Hsiang Wang1, Kathy Y Wei, Christina D Smolke.   

Abstract

A major objective of synthetic biology is to make the process of designing genetically encoded biological systems more systematic, predictable, robust, scalable, and efficient. Examples of genetic systems in the field vary widely in terms of operating hosts, compositional approaches, and network complexity, ranging from simple genetic switches to search-and-destroy systems. While significant advances in DNA synthesis capabilities support the construction of pathway- and genome-scale programs, several design challenges currently restrict the scale of systems that can be reasonably designed and implemented. Thus, while synthetic biology offers much promise in developing systems to address challenges faced in the fields of manufacturing, environment and sustainability, and health and medicine, the realization of this potential is currently limited by the diversity of available parts and effective design frameworks. As researchers make progress in bridging this design gap, advances in the field hint at ever more diverse applications for biological systems.

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Year:  2013        PMID: 23413816      PMCID: PMC3773533          DOI: 10.1146/annurev-chembioeng-061312-103351

Source DB:  PubMed          Journal:  Annu Rev Chem Biomol Eng        ISSN: 1947-5438            Impact factor:   11.059


  189 in total

1.  Rewiring MAP kinase pathways using alternative scaffold assembly mechanisms.

Authors:  Sang-Hyun Park; Ali Zarrinpar; Wendell A Lim
Journal:  Science       Date:  2003-01-02       Impact factor: 47.728

2.  Model-driven engineering of RNA devices to quantitatively program gene expression.

Authors:  James M Carothers; Jonathan A Goler; Darmawi Juminaga; Jay D Keasling
Journal:  Science       Date:  2011-12-23       Impact factor: 47.728

Review 3.  Can yeast systems biology contribute to the understanding of human disease?

Authors:  Dina Petranovic; Jens Nielsen
Journal:  Trends Biotechnol       Date:  2008-09-16       Impact factor: 19.536

Review 4.  Applications of genetically-encoded biosensors for the construction and control of biosynthetic pathways.

Authors:  Joshua K Michener; Kate Thodey; Joe C Liang; Christina D Smolke
Journal:  Metab Eng       Date:  2011-09-18       Impact factor: 9.783

5.  Genetic control of mammalian T-cell proliferation with synthetic RNA regulatory systems.

Authors:  Yvonne Y Chen; Michael C Jensen; Christina D Smolke
Journal:  Proc Natl Acad Sci U S A       Date:  2010-04-26       Impact factor: 11.205

Review 6.  DNA synthesis, assembly and applications in synthetic biology.

Authors:  Siying Ma; Nicholas Tang; Jingdong Tian
Journal:  Curr Opin Chem Biol       Date:  2012-05-25       Impact factor: 8.822

Review 7.  Classical nuclear localization signals: definition, function, and interaction with importin alpha.

Authors:  Allison Lange; Ryan E Mills; Christopher J Lange; Murray Stewart; Scott E Devine; Anita H Corbett
Journal:  J Biol Chem       Date:  2006-12-14       Impact factor: 5.157

8.  Design, construction and characterization of a set of insulated bacterial promoters.

Authors:  Joseph H Davis; Adam J Rubin; Robert T Sauer
Journal:  Nucleic Acids Res       Date:  2010-09-15       Impact factor: 16.971

9.  Improved fusion protein expression of EGFP via the mutation of both Kozak and the initial ATG codon.

Authors:  Chao Dai; Zhijian Cao; Yingliang Wu; Hong Yi; Dahe Jiang; Wenxin Li
Journal:  Cell Mol Biol Lett       Date:  2007-02-17       Impact factor: 5.787

10.  A fast, robust and tunable synthetic gene oscillator.

Authors:  Jesse Stricker; Scott Cookson; Matthew R Bennett; William H Mather; Lev S Tsimring; Jeff Hasty
Journal:  Nature       Date:  2008-10-29       Impact factor: 49.962

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  39 in total

Review 1.  Emerging tools for synthetic genome design.

Authors:  Bo-Rahm Lee; Suhyung Cho; Yoseb Song; Sun Chang Kim; Byung-Kwan Cho
Journal:  Mol Cells       Date:  2013-05-02       Impact factor: 5.034

2.  Protease-based synthetic sensing and signal amplification.

Authors:  Viktor Stein; Kirill Alexandrov
Journal:  Proc Natl Acad Sci U S A       Date:  2014-10-29       Impact factor: 11.205

Review 3.  RNA Switches for Synthetic Biology.

Authors:  Calvin M Schmidt; Christina D Smolke
Journal:  Cold Spring Harb Perspect Biol       Date:  2019-01-02       Impact factor: 10.005

Review 4.  Realizing the potential of synthetic biology.

Authors:  George M Church; Michael B Elowitz; Christina D Smolke; Christopher A Voigt; Ron Weiss
Journal:  Nat Rev Mol Cell Biol       Date:  2014-03-12       Impact factor: 94.444

Review 5.  A versatile framework for microbial engineering using synthetic non-coding RNAs.

Authors:  Lei S Qi; Adam P Arkin
Journal:  Nat Rev Microbiol       Date:  2014-05       Impact factor: 60.633

Review 6.  Regulatory RNAs: charming gene management styles for synthetic biology applications.

Authors:  Jorge Vazquez-Anderson; Lydia M Contreras
Journal:  RNA Biol       Date:  2013-11-18       Impact factor: 4.652

7.  Design and Construction of Generalizable RNA-Protein Hybrid Controllers by Level-Matched Genetic Signal Amplification.

Authors:  Yen-Hsiang Wang; Maureen McKeague; Tammy M Hsu; Christina D Smolke
Journal:  Cell Syst       Date:  2016-11-10       Impact factor: 10.304

8.  In Vitro Screening and in Silico Modeling of RNA-Based Gene Expression Control.

Authors:  Maureen McKeague; Yen-Hsiang Wang; Christina D Smolke
Journal:  ACS Chem Biol       Date:  2015-09-22       Impact factor: 5.100

Review 9.  Rapid prototyping of microbial cell factories via genome-scale engineering.

Authors:  Tong Si; Han Xiao; Huimin Zhao
Journal:  Biotechnol Adv       Date:  2014-11-20       Impact factor: 14.227

Review 10.  Engineering reduced evolutionary potential for synthetic biology.

Authors:  Brian A Renda; Michael J Hammerling; Jeffrey E Barrick
Journal:  Mol Biosyst       Date:  2014-02-21
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