Literature DB >> 25868062

Dynamic metabolic engineering: New strategies for developing responsive cell factories.

Irene M Brockman1, Kristala L J Prather2.   

Abstract

Metabolic engineering strategies have enabled improvements in yield and titer for a variety of valuable small molecules produced naturally in microorganisms, as well as those produced via heterologous pathways. Typically, the approaches have been focused on up- and downregulation of genes to redistribute steady-state pathway fluxes, but more recently a number of groups have developed strategies for dynamic regulation, which allows rebalancing of fluxes according to changing conditions in the cell or the fermentation medium. This review highlights some of the recently published work related to dynamic metabolic engineering strategies and explores how advances in high-throughput screening and synthetic biology can support development of new dynamic systems. Dynamic gene expression profiles allow trade-offs between growth and production to be better managed and can help avoid build-up of undesired intermediates. The implementation is more complex relative to static control, but advances in screening techniques and DNA synthesis will continue to drive innovation in this field.
Copyright © 2015 WILEY-VCH Verlag GmbH & Co. KGaA, Weinheim.

Entities:  

Keywords:  Gene expression; Metabolic engineering; Metabolite sensors; Synthetic biology

Mesh:

Year:  2015        PMID: 25868062      PMCID: PMC4629492          DOI: 10.1002/biot.201400422

Source DB:  PubMed          Journal:  Biotechnol J        ISSN: 1860-6768            Impact factor:   4.677


  83 in total

1.  Regulation of beta-lactamase activity by remote binding of heme: functional coupling of unrelated proteins through domain insertion.

Authors:  Wayne R Edwards; Abigail J Williams; Josephine L Morris; Amy J Baldwin; Rudolf K Allemann; D Dafydd Jones
Journal:  Biochemistry       Date:  2010-08-10       Impact factor: 3.162

2.  Engineering complex riboswitch regulation by dual genetic selection.

Authors:  Vandana Sharma; Yoko Nomura; Yohei Yokobayashi
Journal:  J Am Chem Soc       Date:  2008-12-03       Impact factor: 15.419

3.  Engineering static and dynamic control of synthetic pathways.

Authors:  William J Holtz; Jay D Keasling
Journal:  Cell       Date:  2010-01-08       Impact factor: 41.582

4.  Scale-down simulators for metabolic analysis of large-scale bioprocesses.

Authors:  Peter Neubauer; Stefan Junne
Journal:  Curr Opin Biotechnol       Date:  2010-02-23       Impact factor: 9.740

5.  Microbial production of fatty-acid-derived fuels and chemicals from plant biomass.

Authors:  Eric J Steen; Yisheng Kang; Gregory Bokinsky; Zhihao Hu; Andreas Schirmer; Amy McClure; Stephen B Del Cardayre; Jay D Keasling
Journal:  Nature       Date:  2010-01-28       Impact factor: 49.962

6.  OptForce: an optimization procedure for identifying all genetic manipulations leading to targeted overproductions.

Authors:  Sridhar Ranganathan; Patrick F Suthers; Costas D Maranas
Journal:  PLoS Comput Biol       Date:  2010-04-15       Impact factor: 4.475

7.  Surface sites for engineering allosteric control in proteins.

Authors:  Jeeyeon Lee; Madhusudan Natarajan; Vishal C Nashine; Michael Socolich; Tina Vo; William P Russ; Stephen J Benkovic; Rama Ranganathan
Journal:  Science       Date:  2008-10-17       Impact factor: 47.728

8.  Dynamic metabolic engineering for increasing bioprocess productivity.

Authors:  Nikolaos Anesiadis; William R Cluett; Radhakrishnan Mahadevan
Journal:  Metab Eng       Date:  2008-06-17       Impact factor: 9.783

9.  Autonomous induction of recombinant proteins by minimally rewiring native quorum sensing regulon of E. coli.

Authors:  Chen-Yu Tsao; Sara Hooshangi; Hsuan-Chen Wu; James J Valdes; William E Bentley
Journal:  Metab Eng       Date:  2010-01-11       Impact factor: 9.783

10.  A flow cytometry-based screen for synthetic riboswitches.

Authors:  Sean A Lynch; Justin P Gallivan
Journal:  Nucleic Acids Res       Date:  2008-11-25       Impact factor: 16.971

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  40 in total

1.  Design of a bistable switch to control cellular uptake.

Authors:  Diego A Oyarzún; Madalena Chaves
Journal:  J R Soc Interface       Date:  2015-12-06       Impact factor: 4.118

Review 2.  The application of powerful promoters to enhance gene expression in industrial microorganisms.

Authors:  Shenghu Zhou; Guocheng Du; Zhen Kang; Jianghua Li; Jian Chen; Huazhong Li; Jingwen Zhou
Journal:  World J Microbiol Biotechnol       Date:  2017-01-02       Impact factor: 3.312

3.  Inducible Expression Systems Based on Xenogeneic Silencing and Counter-Silencing and Design of a Metabolic Toggle Switch.

Authors:  Johanna Wiechert; Cornelia Gätgens; Astrid Wirtz; Julia Frunzke
Journal:  ACS Synth Biol       Date:  2020-07-27       Impact factor: 5.110

4.  Precise control of lycopene production to enable a fast-responding, minimal-equipment biosensor.

Authors:  Monica P McNerney; Mark P Styczynski
Journal:  Metab Eng       Date:  2017-08-05       Impact factor: 9.783

5.  In vivo biosensors: mechanisms, development, and applications.

Authors:  Shuobo Shi; Ee Lui Ang; Huimin Zhao
Journal:  J Ind Microbiol Biotechnol       Date:  2018-01-29       Impact factor: 3.346

6.  Development of novel metabolite-responsive transcription factors via transposon-mediated protein fusion.

Authors:  Andrew K D Younger; Peter Y Su; Andrea J Shepard; Shreya V Udani; Thaddeus R Cybulski; Keith E J Tyo; Joshua N Leonard
Journal:  Protein Eng Des Sel       Date:  2018-02-01       Impact factor: 1.650

Review 7.  Precision metabolic engineering: The design of responsive, selective, and controllable metabolic systems.

Authors:  Monica P McNerney; Daniel M Watstein; Mark P Styczynski
Journal:  Metab Eng       Date:  2015-07-17       Impact factor: 9.783

8.  Layered dynamic regulation for improving metabolic pathway productivity in Escherichia coli.

Authors:  Stephanie J Doong; Apoorv Gupta; Kristala L J Prather
Journal:  Proc Natl Acad Sci U S A       Date:  2018-03-05       Impact factor: 11.205

9.  Quorum Sensing Communication Modules for Microbial Consortia.

Authors:  Spencer R Scott; Jeff Hasty
Journal:  ACS Synth Biol       Date:  2016-05-19       Impact factor: 5.110

10.  Improvements in protein production in mammalian cells from targeted metabolic engineering.

Authors:  Anne Richelle; Nathan E Lewis
Journal:  Curr Opin Syst Biol       Date:  2017-06-06
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