Literature DB >> 26876034

Synthetic biology to access and expand nature's chemical diversity.

Michael J Smanski1,2, Hui Zhou2, Jan Claesen3, Ben Shen4, Michael A Fischbach3, Christopher A Voigt2.   

Abstract

Bacterial genomes encode the biosynthetic potential to produce hundreds of thousands of complex molecules with diverse applications, from medicine to agriculture and materials. Accessing these natural products promises to reinvigorate drug discovery pipelines and provide novel routes to synthesize complex chemicals. The pathways leading to the production of these molecules often comprise dozens of genes spanning large areas of the genome and are controlled by complex regulatory networks with some of the most interesting molecules being produced by non-model organisms. In this Review, we discuss how advances in synthetic biology--including novel DNA construction technologies, the use of genetic parts for the precise control of expression and for synthetic regulatory circuits--and multiplexed genome engineering can be used to optimize the design and synthesis of pathways that produce natural products.

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Year:  2016        PMID: 26876034      PMCID: PMC5048682          DOI: 10.1038/nrmicro.2015.24

Source DB:  PubMed          Journal:  Nat Rev Microbiol        ISSN: 1740-1526            Impact factor:   60.633


  215 in total

1.  Improved aptazyme design and in vivo screening enable riboswitching in bacteria.

Authors:  Markus Wieland; Jörg S Hartig
Journal:  Angew Chem Int Ed Engl       Date:  2008       Impact factor: 15.336

Review 2.  Natural products in crop protection.

Authors:  Franck E Dayan; Charles L Cantrell; Stephen O Duke
Journal:  Bioorg Med Chem       Date:  2009-01-27       Impact factor: 3.641

3.  j5 DNA assembly design automation software.

Authors:  Nathan J Hillson; Rafael D Rosengarten; Jay D Keasling
Journal:  ACS Synth Biol       Date:  2011-12-20       Impact factor: 5.110

4.  Synthetic biology.

Authors:  Christopher A Voigt
Journal:  ACS Synth Biol       Date:  2012-01-20       Impact factor: 5.110

Review 5.  Applications of genetically-encoded biosensors for the construction and control of biosynthetic pathways.

Authors:  Joshua K Michener; Kate Thodey; Joe C Liang; Christina D Smolke
Journal:  Metab Eng       Date:  2011-09-18       Impact factor: 9.783

Review 6.  Combinatorial biosynthesis of polyketides--a perspective.

Authors:  Fong T Wong; Chaitan Khosla
Journal:  Curr Opin Chem Biol       Date:  2012-02-16       Impact factor: 8.822

Review 7.  Engineered gene circuits.

Authors:  Jeff Hasty; David McMillen; J J Collins
Journal:  Nature       Date:  2002-11-14       Impact factor: 49.962

8.  Refactoring the nitrogen fixation gene cluster from Klebsiella oxytoca.

Authors:  Karsten Temme; Dehua Zhao; Christopher A Voigt
Journal:  Proc Natl Acad Sci U S A       Date:  2012-04-16       Impact factor: 11.205

9.  Design, construction and characterization of a set of insulated bacterial promoters.

Authors:  Joseph H Davis; Adam J Rubin; Robert T Sauer
Journal:  Nucleic Acids Res       Date:  2010-09-15       Impact factor: 16.971

10.  Exploiting CRISPR-Cas nucleases to produce sequence-specific antimicrobials.

Authors:  David Bikard; Chad W Euler; Wenyan Jiang; Philip M Nussenzweig; Gregory W Goldberg; Xavier Duportet; Vincent A Fischetti; Luciano A Marraffini
Journal:  Nat Biotechnol       Date:  2014-10-05       Impact factor: 54.908

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  123 in total

1.  Bacterial synthesis of C3-C5 diols via extending amino acid catabolism.

Authors:  Jian Wang; Chenyi Li; Yusong Zou; Yajun Yan
Journal:  Proc Natl Acad Sci U S A       Date:  2020-07-27       Impact factor: 11.205

2.  New Kid on the Block: LmbU Expands the Repertoire of Specialized Metabolic Regulators in Streptomyces.

Authors:  Kou-San Ju; Xiafei Zhang; Marie A Elliot
Journal:  J Bacteriol       Date:  2017-12-20       Impact factor: 3.490

3.  Functional Characterization of a 28-Kilobase Catabolic Island from Pseudomonas sp. Strain M1 Involved in Biotransformation of β-Myrcene and Related Plant-Derived Volatiles.

Authors:  Pedro Soares-Castro; Pedro Montenegro-Silva; Hermann J Heipieper; Pedro M Santos
Journal:  Appl Environ Microbiol       Date:  2017-04-17       Impact factor: 4.792

Review 4.  Taming the Beast: Interplay between Gut Small Molecules and Enteric Pathogens.

Authors:  Aman Kumar; Melissa Ellermann; Vanessa Sperandio
Journal:  Infect Immun       Date:  2019-08-21       Impact factor: 3.441

5.  CyanoGate: A Modular Cloning Suite for Engineering Cyanobacteria Based on the Plant MoClo Syntax.

Authors:  Ravendran Vasudevan; Grant A R Gale; Alejandra A Schiavon; Anton Puzorjov; John Malin; Michael D Gillespie; Konstantinos Vavitsas; Valentin Zulkower; Baojun Wang; Christopher J Howe; David J Lea-Smith; Alistair J McCormick
Journal:  Plant Physiol       Date:  2019-02-28       Impact factor: 8.340

Review 6.  Natural product discovery from the human microbiome.

Authors:  Matthew R Wilson; Li Zha; Emily P Balskus
Journal:  J Biol Chem       Date:  2017-04-07       Impact factor: 5.157

7.  Design of Adjacent Transcriptional Regions to Tune Gene Expression and Facilitate Circuit Construction.

Authors:  Fuqing Wu; Qi Zhang; Xiao Wang
Journal:  Cell Syst       Date:  2018-02-07       Impact factor: 10.304

8.  Development of a cyanobacterial heterologous polyketide production platform.

Authors:  Julia Roulet; Arnaud Taton; James W Golden; Ana Arabolaza; Michael D Burkart; Hugo Gramajo
Journal:  Metab Eng       Date:  2018-07-21       Impact factor: 9.783

9.  An integrated workflow for phenazine-modifying enzyme characterization.

Authors:  R Cameron Coates; Benjamin P Bowen; Ernst Oberortner; Linda Thomashow; Michalis Hadjithomas; Zhiying Zhao; Jing Ke; Leslie Silva; Katherine Louie; Gaoyan Wang; David Robinson; Angela Tarver; Matthew Hamilton; Andrea Lubbe; Meghan Feltcher; Jeffery L Dangl; Amrita Pati; David Weller; Trent R Northen; Jan-Fang Cheng; Nigel J Mouncey; Samuel Deutsch; Yasuo Yoshikuni
Journal:  J Ind Microbiol Biotechnol       Date:  2018-03-15       Impact factor: 3.346

10.  Bioassay for Determining the Concentrations of Caffeine and Individual Methylxanthines in Complex Samples.

Authors:  Alejandro E Gutierrez; Prachi Shah; Abigail E Rex; Tien C Nguyen; Saamiha P Kenkare; Jeffrey E Barrick; Dennis M Mishler
Journal:  Appl Environ Microbiol       Date:  2019-11-14       Impact factor: 4.792

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