Literature DB >> 26189665

Precision metabolic engineering: The design of responsive, selective, and controllable metabolic systems.

Monica P McNerney1, Daniel M Watstein1, Mark P Styczynski2.   

Abstract

Metabolic engineering is generally focused on static optimization of cells to maximize production of a desired product, though recently dynamic metabolic engineering has explored how metabolic programs can be varied over time to improve titer. However, these are not the only types of applications where metabolic engineering could make a significant impact. Here, we discuss a new conceptual framework, termed "precision metabolic engineering," involving the design and engineering of systems that make different products in response to different signals. Rather than focusing on maximizing titer, these types of applications typically have three hallmarks: sensing signals that determine the desired metabolic target, completely directing metabolic flux in response to those signals, and producing sharp responses at specific signal thresholds. In this review, we will first discuss and provide examples of precision metabolic engineering. We will then discuss each of these hallmarks and identify which existing metabolic engineering methods can be applied to accomplish those tasks, as well as some of their shortcomings. Ultimately, precise control of metabolic systems has the potential to enable a host of new metabolic engineering and synthetic biology applications for any problem where flexibility of response to an external signal could be useful.
Copyright © 2015 International Metabolic Engineering Society. Published by Elsevier Inc. All rights reserved.

Entities:  

Keywords:  Metabolic control; Pathway regulation; Precision metabolic engineering; Product selectivity; Sensory systems; Synthetic biology

Mesh:

Year:  2015        PMID: 26189665      PMCID: PMC4770000          DOI: 10.1016/j.ymben.2015.06.011

Source DB:  PubMed          Journal:  Metab Eng        ISSN: 1096-7176            Impact factor:   9.783


  81 in total

1.  Engineering controllable protein degradation.

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Review 2.  Engineering metabolism through dynamic control.

Authors:  Naveen Venayak; Nikolaos Anesiadis; William R Cluett; Radhakrishnan Mahadevan
Journal:  Curr Opin Biotechnol       Date:  2015-01-20       Impact factor: 9.740

Review 3.  Applications of genetically-encoded biosensors for the construction and control of biosynthetic pathways.

Authors:  Joshua K Michener; Kate Thodey; Joe C Liang; Christina D Smolke
Journal:  Metab Eng       Date:  2011-09-18       Impact factor: 9.783

4.  Tailored fatty acid synthesis via dynamic control of fatty acid elongation.

Authors:  Joseph P Torella; Tyler J Ford; Scott N Kim; Amanda M Chen; Jeffrey C Way; Pamela A Silver
Journal:  Proc Natl Acad Sci U S A       Date:  2013-06-24       Impact factor: 11.205

5.  Genetic switchboard for synthetic biology applications.

Authors:  Jarred M Callura; Charles R Cantor; James J Collins
Journal:  Proc Natl Acad Sci U S A       Date:  2012-03-27       Impact factor: 11.205

6.  Directed evolution of LuxI for enhanced OHHL production.

Authors:  Pavan Kumar Reddy Kambam; Daniel J Sayut; Yan Niu; Dawn T Eriksen; Lianhong Sun
Journal:  Biotechnol Bioeng       Date:  2008-10-01       Impact factor: 4.530

7.  Plasmid-encoded protein: the principal factor in the "metabolic burden" associated with recombinant bacteria.

Authors:  W E Bentley; N Mirjalili; D C Andersen; R H Davis; D S Kompala
Journal:  Biotechnol Bioeng       Date:  1990-03-25       Impact factor: 4.530

8.  Metabolic engineering of Escherichia coli for limonene and perillyl alcohol production.

Authors:  Jorge Alonso-Gutierrez; Rossana Chan; Tanveer S Batth; Paul D Adams; Jay D Keasling; Christopher J Petzold; Taek Soon Lee
Journal:  Metab Eng       Date:  2013-05-29       Impact factor: 9.783

9.  Optimization of the mevalonate-based isoprenoid biosynthetic pathway in Escherichia coli for production of the anti-malarial drug precursor amorpha-4,11-diene.

Authors:  Jennifer R Anthony; Larry C Anthony; Farnaz Nowroozi; Gina Kwon; Jack D Newman; Jay D Keasling
Journal:  Metab Eng       Date:  2008-08-12       Impact factor: 9.783

10.  Tunable protein degradation in bacteria.

Authors:  D Ewen Cameron; James J Collins
Journal:  Nat Biotechnol       Date:  2014-11-17       Impact factor: 54.908

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  16 in total

1.  Precise control of lycopene production to enable a fast-responding, minimal-equipment biosensor.

Authors:  Monica P McNerney; Mark P Styczynski
Journal:  Metab Eng       Date:  2017-08-05       Impact factor: 9.783

2.  In vivo biosensors: mechanisms, development, and applications.

Authors:  Shuobo Shi; Ee Lui Ang; Huimin Zhao
Journal:  J Ind Microbiol Biotechnol       Date:  2018-01-29       Impact factor: 3.346

3.  Developing a pyruvate-driven metabolic scenario for growth-coupled microbial production.

Authors:  Jian Wang; Ruihua Zhang; Yan Zhang; Yaping Yang; Yuheng Lin; Yajun Yan
Journal:  Metab Eng       Date:  2019-07-23       Impact factor: 9.783

4.  Designing and Constructing Artificial Small RNAs for Gene Regulation and Carbon Flux Redirection in Photosynthetic Cyanobacteria.

Authors:  Shubin Li; Tao Sun; Lei Chen; Weiwen Zhang
Journal:  Methods Mol Biol       Date:  2021

Review 5.  Small molecule signaling, regulation, and potential applications in cellular therapeutics.

Authors:  Monica P McNerney; Mark P Styczynski
Journal:  Wiley Interdiscip Rev Syst Biol Med       Date:  2017-09-28

6.  In silico metabolic network analysis of Arabidopsis leaves.

Authors:  Veronique Beckers; Lisa Maria Dersch; Katrin Lotz; Guido Melzer; Oliver Ernst Bläsing; Regine Fuchs; Thomas Ehrhardt; Christoph Wittmann
Journal:  BMC Syst Biol       Date:  2016-10-29

7.  Development of a Pigment-Based Whole-Cell Zinc Biosensor for Human Serum.

Authors:  Daniel M Watstein; Mark P Styczynski
Journal:  ACS Synth Biol       Date:  2017-12-22       Impact factor: 5.110

Review 8.  Whole-cell biocatalysts by design.

Authors:  Baixue Lin; Yong Tao
Journal:  Microb Cell Fact       Date:  2017-06-13       Impact factor: 5.328

9.  Dynamic regulation of metabolic flux in engineered bacteria using a pathway-independent quorum-sensing circuit.

Authors:  Apoorv Gupta; Irene M Brockman Reizman; Christopher R Reisch; Kristala L J Prather
Journal:  Nat Biotechnol       Date:  2017-02-13       Impact factor: 54.908

10.  Metabolomics Analysis of the Toxic Effects of the Production of Lycopene and Its Precursors.

Authors:  April M Miguez; Monica P McNerney; Mark P Styczynski
Journal:  Front Microbiol       Date:  2018-05-03       Impact factor: 5.640

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