Literature DB >> 21836889

Diaqua-bis-(4-bromo-benzoato-κO)bis-(nicotinamide-κN)copper(II).

Hacali Necefoğlu, Füreya Elif Ozbek, Vijdan Oztürk, Barış Tercan, Tuncer Hökelek.   

Abstract

The asymmetric unit of the title mononuclear Cu(II) complex, [Cu(C(7)H(4)BrO(2))(2)(C(6)H(6)N(2)O)(2)(H(2)O)(2)], contains one half-mol-ecule, the Cu(II) atom being located on an inversion center. The unit cell contains two nicotinamide (NA), two 4-bromo-benzoate (PBB) ligands and two coordinated water mol-ecules. The four O atoms in the equatorial plane around the Cu(II) ion form a slightly distorted square-planar arrangement, while the slightly distorted octa-hedral coordination is completed by the two N atoms of the NA ligands in the axial positions. The dihedral angle between the carboxyl-ate group and the adjacent benzene ring is 22.17 (16)°, while the pyridine ring and the benzene ring are oriented at a dihedral angle of 82.80 (6)°. In the crystal, N-H⋯O, O-H⋯O and C-H⋯O hydrogen bonds link the mol-ecules into a three-dimensional network. A weak C-H⋯π inter-action is also observed.

Entities:  

Year:  2011        PMID: 21836889      PMCID: PMC3151863          DOI: 10.1107/S1600536811021696

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For literature on niacin, see: Krishnamachari (1974 ▶). For infomation on the nicotinic acid derivative N,N-diethyl­nicotinamide, see: Bigoli et al. (1972 ▶). For related structures, see: Hökelek et al. (1996 ▶, 2009a ▶,b ▶); Hökelek & Necefoğlu (1998 ▶, 2007 ▶); Necefoğlu et al. (2011 ▶). For bond-length data, see: Allen et al. (1987 ▶).

Experimental

Crystal data

[Cu(C7H4BrO2)2(C6H6N2O)2(H2O)2] M = 743.84 Triclinic, a = 7.7072 (3) Å b = 9.7536 (5) Å c = 9.8471 (4) Å α = 76.273 (2)° β = 74.240 (2)° γ = 85.024 (3)° V = 691.86 (5) Å3 Z = 1 Mo Kα radiation μ = 3.73 mm−1 T = 100 K 0.41 × 0.38 × 0.35 mm

Data collection

Bruker Kappa APEXII CCD area-detector diffractometer Absorption correction: multi-scan (SADABS; Bruker, 2005 ▶) T min = 0.236, T max = 0.271 11758 measured reflections 3515 independent reflections 3172 reflections with I > 2σ(I) R int = 0.057

Refinement

R[F 2 > 2σ(F 2)] = 0.039 wR(F 2) = 0.108 S = 1.13 3515 reflections 203 parameters H atoms treated by a mixture of independent and constrained refinement Δρmax = 0.86 e Å−3 Δρmin = −1.29 e Å−3 Data collection: APEX2 (Bruker, 2007 ▶); cell refinement: SAINT (Bruker, 2007 ▶); data reduction: SAINT; program(s) used to solve structure: SHELXS97 (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: Mercury (Macrae et al., 2006 ▶); software used to prepare material for publication: WinGX publication routines (Farrugia, 1999 ▶) and PLATON (Spek, 2009 ▶). Crystal structure: contains datablock(s) I, global. DOI: 10.1107/S1600536811021696/su2279sup1.cif Structure factors: contains datablock(s) I. DOI: 10.1107/S1600536811021696/su2279Isup2.hkl Additional supplementary materials: crystallographic information; 3D view; checkCIF report
[Cu(C7H4BrO2)2(C6H6N2O)2(H2O)2]Z = 1
Mr = 743.84F(000) = 371
Triclinic, P1Dx = 1.785 Mg m3
Hall symbol: -P 1Mo Kα radiation, λ = 0.71073 Å
a = 7.7072 (3) ÅCell parameters from 7694 reflections
b = 9.7536 (5) Åθ = 2.2–28.7°
c = 9.8471 (4) ŵ = 3.73 mm1
α = 76.273 (2)°T = 100 K
β = 74.240 (2)°Block, blue
γ = 85.024 (3)°0.41 × 0.38 × 0.35 mm
V = 691.86 (5) Å3
Bruker Kappa APEXII CCD area-detector diffractometer3515 independent reflections
Radiation source: fine-focus sealed tube3172 reflections with I > 2σ(I)
graphiteRint = 0.057
φ and ω scansθmax = 28.7°, θmin = 2.2°
Absorption correction: multi-scan (SADABS; Bruker, 2005)h = −10→10
Tmin = 0.236, Tmax = 0.271k = −12→13
11758 measured reflectionsl = −13→13
Refinement on F2Primary atom site location: structure-invariant direct methods
Least-squares matrix: fullSecondary atom site location: difference Fourier map
R[F2 > 2σ(F2)] = 0.039Hydrogen site location: inferred from neighbouring sites
wR(F2) = 0.108H atoms treated by a mixture of independent and constrained refinement
S = 1.13w = 1/[σ2(Fo2) + (0.0563P)2 + 0.169P] where P = (Fo2 + 2Fc2)/3
3515 reflections(Δ/σ)max = 0.001
203 parametersΔρmax = 0.86 e Å3
0 restraintsΔρmin = −1.29 e Å3
Geometry. All esds (except the esd in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell esds are taken into account individually in the estimation of esds in distances, angles and torsion angles; correlations between esds in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell esds is used for estimating esds involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > 2sigma(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/Ueq
Br10.50803 (3)0.60173 (3)0.78887 (3)0.02585 (11)
Cu10.00000.00000.50000.00979 (12)
O10.1042 (2)0.17464 (16)0.50913 (16)0.0123 (3)
O2−0.1351 (2)0.26522 (18)0.64918 (17)0.0160 (3)
O30.4297 (2)−0.00851 (18)0.84131 (16)0.0182 (4)
O40.3099 (2)−0.0838 (2)0.43625 (18)0.0172 (4)
H410.271 (5)−0.146 (4)0.402 (4)0.036 (9)*
H420.383 (5)−0.042 (4)0.371 (4)0.043 (11)*
N1−0.0003 (2)−0.08494 (19)0.70725 (18)0.0111 (4)
N20.3330 (3)−0.1428 (2)1.0661 (2)0.0176 (4)
H210.251 (4)−0.189 (3)1.134 (3)0.028 (10)*
H220.417 (4)−0.110 (3)1.094 (3)0.016 (7)*
C10.0294 (3)0.2585 (2)0.5904 (2)0.0103 (4)
C20.1508 (3)0.3509 (2)0.6240 (2)0.0116 (4)
C30.0789 (3)0.4675 (2)0.6809 (2)0.0149 (4)
H3−0.04420.49430.68830.018*
C40.1860 (3)0.5448 (3)0.7267 (3)0.0174 (5)
H40.13750.62510.76440.021*
C50.3644 (3)0.5032 (2)0.7167 (2)0.0145 (4)
C60.4403 (3)0.3898 (2)0.6570 (2)0.0158 (5)
H60.56380.36380.64900.019*
C70.3328 (3)0.3151 (2)0.6094 (2)0.0144 (4)
H70.38370.23840.56630.017*
C8−0.1393 (3)−0.1592 (2)0.8002 (2)0.0132 (4)
H8−0.2407−0.17210.76750.016*
C9−0.1386 (3)−0.2178 (3)0.9430 (2)0.0170 (5)
H9−0.2382−0.27031.00720.020*
C100.0077 (3)−0.1992 (2)0.9903 (2)0.0150 (4)
H100.0101−0.23881.08770.018*
C110.1524 (3)−0.1221 (2)0.8948 (2)0.0109 (4)
C120.1421 (3)−0.0671 (2)0.7527 (2)0.0122 (4)
H120.2405−0.01510.68590.015*
C130.3162 (3)−0.0880 (2)0.9325 (2)0.0137 (5)
U11U22U33U12U13U23
Br10.02453 (18)0.03006 (18)0.03230 (18)−0.00115 (12)−0.01163 (13)−0.01980 (13)
Cu10.0109 (2)0.0129 (2)0.00714 (19)0.00162 (14)−0.00356 (14)−0.00453 (14)
O10.0122 (7)0.0149 (8)0.0112 (7)−0.0005 (6)−0.0023 (6)−0.0064 (6)
O20.0104 (8)0.0214 (9)0.0164 (8)0.0013 (6)−0.0016 (6)−0.0073 (6)
O30.0165 (8)0.0292 (9)0.0101 (7)−0.0054 (7)−0.0030 (6)−0.0053 (7)
O40.0150 (8)0.0222 (9)0.0147 (8)0.0026 (7)−0.0015 (7)−0.0085 (7)
N10.0115 (9)0.0131 (9)0.0100 (8)0.0037 (7)−0.0032 (7)−0.0062 (7)
N20.0172 (10)0.0277 (11)0.0090 (9)−0.0027 (9)−0.0044 (8)−0.0043 (8)
C10.0091 (9)0.0127 (10)0.0087 (9)−0.0004 (7)−0.0024 (8)−0.0014 (8)
C20.0141 (10)0.0129 (10)0.0083 (9)0.0016 (8)−0.0027 (8)−0.0038 (8)
C30.0132 (10)0.0162 (11)0.0152 (10)0.0034 (8)−0.0025 (8)−0.0057 (9)
C40.0200 (12)0.0152 (11)0.0189 (11)0.0042 (9)−0.0040 (9)−0.0102 (9)
C50.0151 (11)0.0175 (11)0.0139 (10)−0.0030 (8)−0.0044 (8)−0.0075 (8)
C60.0117 (10)0.0192 (11)0.0179 (10)0.0029 (8)−0.0045 (9)−0.0070 (9)
C70.0157 (11)0.0150 (11)0.0131 (10)0.0030 (8)−0.0024 (8)−0.0072 (8)
C80.0112 (10)0.0169 (11)0.0129 (10)0.0037 (8)−0.0030 (8)−0.0073 (8)
C90.0175 (12)0.0190 (11)0.0129 (10)0.0011 (9)0.0000 (9)−0.0055 (9)
C100.0153 (11)0.0189 (11)0.0097 (9)0.0008 (9)−0.0009 (8)−0.0045 (8)
C110.0107 (10)0.0140 (10)0.0094 (9)0.0019 (8)−0.0025 (8)−0.0061 (8)
C120.0136 (10)0.0143 (10)0.0100 (9)0.0037 (8)−0.0030 (8)−0.0065 (8)
C130.0153 (11)0.0187 (11)0.0090 (10)0.0043 (9)−0.0035 (8)−0.0082 (8)
Br1—C51.895 (2)C3—H30.9500
Cu1—O11.9756 (16)C4—C51.383 (3)
Cu1—O1i1.9756 (16)C4—H40.9500
Cu1—N12.0116 (16)C6—C51.386 (3)
Cu1—N1i2.0116 (16)C6—C71.384 (3)
Cu1—O42.4199 (16)C6—H60.9500
Cu1—O4i2.4199 (16)C7—H70.9500
O1—C11.272 (3)C8—N11.340 (3)
O2—C11.246 (3)C8—H80.9500
O3—C131.238 (3)C9—C81.388 (3)
O4—H410.87 (4)C9—H90.9500
O4—H420.79 (4)C10—C91.371 (3)
N2—C131.334 (3)C10—C111.391 (3)
N2—H210.85 (3)C10—H100.9500
N2—H220.88 (3)C11—C121.396 (3)
C1—C21.502 (3)C11—C131.493 (3)
C2—C71.393 (3)C12—N11.331 (3)
C3—C21.392 (3)C12—H120.9500
C3—C41.387 (3)
O1—Cu1—O1i180.0C4—C3—C2120.4 (2)
O1—Cu1—O485.01 (6)C4—C3—H3119.8
O1i—Cu1—O494.99 (6)C3—C4—H4120.5
O1—Cu1—O4i94.99 (6)C5—C4—C3119.0 (2)
O1i—Cu1—O4i85.01 (6)C5—C4—H4120.5
O1—Cu1—N190.51 (7)C4—C5—Br1119.31 (17)
O1i—Cu1—N189.49 (7)C4—C5—C6121.7 (2)
O1—Cu1—N1i89.49 (7)C6—C5—Br1119.02 (17)
O1i—Cu1—N1i90.51 (7)C5—C6—H6120.6
O4i—Cu1—O4180.0C7—C6—C5118.7 (2)
N1i—Cu1—N1180.0C7—C6—H6120.6
N1—Cu1—O486.82 (6)C2—C7—H7119.6
N1i—Cu1—O493.18 (6)C6—C7—C2120.8 (2)
N1—Cu1—O4i93.18 (6)C6—C7—H7119.6
N1i—Cu1—O4i86.82 (6)N1—C8—C9121.6 (2)
C1—O1—Cu1125.94 (15)N1—C8—H8119.2
Cu1—O4—H4187 (2)C9—C8—H8119.2
Cu1—O4—H42122 (3)C8—C9—H9120.4
H41—O4—H42105 (3)C10—C9—C8119.3 (2)
C8—N1—Cu1121.83 (14)C10—C9—H9120.4
C12—N1—Cu1118.84 (15)C9—C10—C11119.6 (2)
C12—N1—C8119.33 (18)C9—C10—H10120.2
C13—N2—H21124.3 (19)C11—C10—H10120.2
C13—N2—H22118.4 (19)C10—C11—C12117.8 (2)
H22—N2—H21115 (3)C10—C11—C13125.52 (19)
O1—C1—C2117.12 (18)C12—C11—C13116.7 (2)
O2—C1—O1125.2 (2)N1—C12—C11122.5 (2)
O2—C1—C2117.63 (19)N1—C12—H12118.8
C3—C2—C1119.91 (19)C11—C12—H12118.8
C3—C2—C7119.4 (2)O3—C13—N2122.1 (2)
C7—C2—C1120.53 (19)O3—C13—C11119.74 (18)
C2—C3—H3119.8N2—C13—C11118.2 (2)
O4—Cu1—O1—C1−150.09 (16)C4—C3—C2—C7−1.9 (3)
O4i—Cu1—O1—C129.91 (16)C2—C3—C4—C5−0.8 (3)
N1—Cu1—O1—C1−63.33 (16)C3—C4—C5—Br1−176.52 (17)
N1i—Cu1—O1—C1116.67 (16)C3—C4—C5—C62.5 (4)
O1—Cu1—N1—C12−42.00 (15)C7—C6—C5—Br1177.63 (17)
O1i—Cu1—N1—C12138.00 (15)C7—C6—C5—C4−1.4 (4)
O1—Cu1—N1—C8138.32 (16)C5—C6—C7—C2−1.4 (3)
O1i—Cu1—N1—C8−41.68 (16)C9—C8—N1—Cu1179.86 (16)
O4—Cu1—N1—C1242.98 (15)C9—C8—N1—C120.2 (3)
O4i—Cu1—N1—C12−137.02 (15)C10—C9—C8—N10.1 (3)
O4—Cu1—N1—C8−136.71 (16)C11—C10—C9—C80.0 (3)
O4i—Cu1—N1—C843.29 (16)C9—C10—C11—C12−0.4 (3)
Cu1—O1—C1—O2−19.3 (3)C9—C10—C11—C13177.1 (2)
Cu1—O1—C1—C2157.31 (13)C10—C11—C12—N10.7 (3)
O1—C1—C2—C3164.19 (19)C13—C11—C12—N1−177.08 (18)
O1—C1—C2—C7−20.9 (3)C10—C11—C13—O3−174.0 (2)
O2—C1—C2—C3−19.0 (3)C10—C11—C13—N24.7 (3)
O2—C1—C2—C7156.0 (2)C12—C11—C13—O33.6 (3)
C1—C2—C7—C6−171.9 (2)C12—C11—C13—N2−177.76 (19)
C3—C2—C7—C63.0 (3)C11—C12—N1—Cu1179.75 (15)
C4—C3—C2—C1173.1 (2)C11—C12—N1—C8−0.6 (3)
Cg is the centroid of the N1/C8–C12 pyridine ring.
D—H···AD—HH···AD···AD—H···A
N2—H21···O2ii0.85 (3)2.06 (3)2.831 (2)151 (3)
N2—H22···O3iii0.88 (3)2.03 (3)2.893 (3)166 (3)
O4—H41···O2i0.87 (4)1.86 (4)2.718 (2)167 (4)
O4—H42···O3iv0.78 (4)2.17 (4)2.911 (2)159 (4)
C6—H6···O2v0.952.433.377 (3)172
C4—H4···Cgvi0.952.633.581 (3)176
Table 1

Hydrogen-bond geometry (Å, °)

Cg is the centroid of the N1/C8–C12 pyridine ring.

D—H⋯AD—HH⋯ADAD—H⋯A
N2—H21⋯O2i0.85 (3)2.06 (3)2.831 (2)151 (3)
N2—H22⋯O3ii0.88 (3)2.03 (3)2.893 (3)166 (3)
O4—H41⋯O2iii0.87 (4)1.86 (4)2.718 (2)167 (4)
O4—H42⋯O3iv0.78 (4)2.17 (4)2.911 (2)159 (4)
C6—H6⋯O2v0.952.433.377 (3)172
C4—H4⋯Cgvi0.952.633.581 (3)176

Symmetry codes: (i) ; (ii) ; (iii) ; (iv) ; (v) ; (vi) .

  6 in total

1.  A short history of SHELX.

Authors:  George M Sheldrick
Journal:  Acta Crystallogr A       Date:  2007-12-21       Impact factor: 2.290

2.  Some aspects of copper metabolism in pellagra.

Authors:  K A Krishnamachari
Journal:  Am J Clin Nutr       Date:  1974-02       Impact factor: 7.045

3.  Diaqua-bis-(N,N-diethyl-nicotinamide-κN)bis-(4-ethyl-benzoato-κO)cobalt(II).

Authors:  Hacali Necefoğlu; Ali Maracı; Füreya Elif Ozbek; Barış Tercan; Tuncer Hökelek
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2011-04-22

4.  Diaqua-bis(2-bromo-benzoato-κO)bis-(nicotinamide-κN)zinc(II).

Authors:  Tuncer Hökelek; Hakan Dal; Barış Tercan; F Elif Ozbek; Hacali Necefoğlu
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2009-04-30

5.  Diaqua-bis(2-chloro-benzoato-κO)bis-(nicotinamide-κN)nickel(II).

Authors:  Tuncer Hökelek; Hakan Dal; Barış Tercan; F Elif Ozbek; Hacali Necefoğlu
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2009-03-31

6.  Structure validation in chemical crystallography.

Authors:  Anthony L Spek
Journal:  Acta Crystallogr D Biol Crystallogr       Date:  2009-01-20
  6 in total
  9 in total

1.  Di-aqua-bis-(3-chloro-benzoato-κO)bis-(nicotinamide-κN (1))cobalt(II).

Authors:  Nihat Bozkurt; Nefise Dilek; Nagihan Caylak Delibaş; Hacali Necefoğlu; Tuncer Hökelek
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2013-05-31

2.  Diaqua-bis-(4-formyl-benzoato-κO(1))bis-(nicotinamide-κN(1))copper(II).

Authors:  Mustafa Sertçelik; Nagihan Caylak Delibaş; Hacali Necefoğlu; Tuncer Hökelek
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2012-06-30

3.  Diaqua-bis-(4-formyl-benzoato-κO(1))bis-(nicotinamide-κN(1))nickel(II).

Authors:  Mustafa Sertçelik; Nagihan Caylak Delibaş; Hacali Necefoğlu; Tuncer Hökelek
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2012-06-20

4.  Diaqua-bis-(N,N-diethyl-nicotinamide-κN(1))bis-(4-formyl-benzoato-κO(1))zinc.

Authors:  Mustafa Sertçelik; Nagihan Caylak Delibaş; Hacali Necefoğlu; Tuncer Hökelek
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2012-07-14

5.  Diaqua-bis-(2-iodo-benzoato-κO)bis-(nicotinamide-κN(1))copper(II).

Authors:  Omür Aydın; Nagihan Caylak Delibaş; Hacali Necefoğlu; Tuncer Hökelek
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2012-08-08

6.  Diaqua-bis-(4-formyl-benzoato-κO(1))bis-(nicotinamide-κN(1))cobalt(II).

Authors:  Mustafa Sertçelik; Nagihan Caylak Delibaş; Hacali Necefoğlu; Tuncer Hökelek
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2012-07-18

7.  Diaqua-bis-(2-chloro-benzoato-κO)bis-(nicotinamide-κN (1))cobalt(II).

Authors:  Oznur Dincel; Barış Tercan; Füreya Elif Oztürkkan; Hacali Necefoğlu; Tuncer Hökelek
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2013-02-28

8.  Diaqua-bis-(4-formyl-benzoato-κO(1))bis-(nicotinamide-κN(1))zinc.

Authors:  Mustafa Sertçelik; Nagihan Caylak Delibaş; Hacali Necefoğlu; Tuncer Hökelek
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2012-07-28

9.  Diaqua-bis-(2-iodo-benzoato-κO)bis-(nicotinamide-κN(1))cobalt(II).

Authors:  Omür Aydın; Nagihan Caylak Delibaş; Hacali Necefoğlu; Tuncer Hökelek
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2012-03-31
  9 in total

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