Literature DB >> 22807707

Diaqua-bis-(4-formyl-benzoato-κO(1))bis-(nicotinamide-κN(1))copper(II).

Mustafa Sertçelik, Nagihan Caylak Delibaş, Hacali Necefoğlu, Tuncer Hökelek.   

Abstract

In the title complex, [Cu(C(8)H(5)O(3))(2)(C(6)H(6)N(2)O)(2)(H(2)O)(2)], the Cu(II) cation is located on an inversion center and is coordinated by two 4-formyl-benzoate (FB) anions, two nicotinamide (NA) ligands and two water mol-ecules in an elongated distorted octa-hedral geometry. The dihedral angle between the carboxyl-ate group and the adjacent benzene ring is 23.00 (10)°, while the pyridine ring and the benzene ring are oriented at a dihedral angle of 85.34 (4)°. An intra-molecular O-H⋯O hydrogen bond occurs between coordinating water mol-ecule and the carboxyl-ate group. In the crystal, N-H⋯O, O-H⋯O and weak C-H⋯O hydrogen bonds link the mol-ecules into a three-dimensional supra-molecular network. A weak C-H⋯π inter-action also occurs in the crystal.

Entities:  

Year:  2012        PMID: 22807707      PMCID: PMC3393247          DOI: 10.1107/S1600536812028814

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For literature on niacin, see: Krishnamachari (1974 ▶). For information on the nicotinic acid derivative N,N-diethyl­nicotinamide, see: Bigoli et al. (1972 ▶). For related structures, see: Aydın et al. (2012 ▶); Hökelek et al. (1996 ▶, 2009 ▶); Hökelek & Necefoğlu (1998 ▶, 2007 ▶); Necefoğlu et al. (2011 ▶); Sertçelik et al. (2012 ▶). For bond-length data, see: Allen et al. (1987 ▶).

Experimental

Crystal data

[Cu(C8H5O3)2(C6H6N2O)2(H2O)2] M = 642.08 Triclinic, a = 7.8175 (2) Å b = 9.6539 (3) Å c = 9.8361 (3) Å α = 77.053 (3)° β = 74.041 (2)° γ = 87.295 (3)° V = 695.49 (4) Å3 Z = 1 Mo Kα radiation μ = 0.85 mm−1 T = 100 K 0.32 × 0.28 × 0.14 mm

Data collection

Bruker Kappa APEXII CCD area-detector diffractometer Absorption correction: multi-scan (SADABS; Bruker, 2005 ▶) T min = 0.762, T max = 0.888 12850 measured reflections 3482 independent reflections 3325 reflections with I > 2σ(I) R int = 0.025

Refinement

R[F 2 > 2σ(F 2)] = 0.025 wR(F 2) = 0.066 S = 1.09 3482 reflections 216 parameters H atoms treated by a mixture of independent and constrained refinement Δρmax = 0.40 e Å−3 Δρmin = −0.39 e Å−3 Data collection: APEX2 (Bruker, 2007 ▶); cell refinement: SAINT (Bruker, 2007 ▶); data reduction: SAINT; program(s) used to solve structure: SHELXS97 (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: ORTEP-3 for Windows (Farrugia, 1997 ▶); software used to prepare material for publication: WinGX (Farrugia, 1999 ▶) and PLATON (Spek, 2009 ▶). Crystal structure: contains datablock(s) I, global. DOI: 10.1107/S1600536812028814/xu5579sup1.cif Structure factors: contains datablock(s) I. DOI: 10.1107/S1600536812028814/xu5579Isup2.hkl Additional supplementary materials: crystallographic information; 3D view; checkCIF report
[Cu(C8H5O3)2(C6H6N2O)2(H2O)2]Z = 1
Mr = 642.08F(000) = 331
Triclinic, P1Dx = 1.533 Mg m3
Hall symbol: -P 1Mo Kα radiation, λ = 0.71073 Å
a = 7.8175 (2) ÅCell parameters from 8185 reflections
b = 9.6539 (3) Åθ = 2.7–28.4°
c = 9.8361 (3) ŵ = 0.85 mm1
α = 77.053 (3)°T = 100 K
β = 74.041 (2)°Block, blue
γ = 87.295 (3)°0.32 × 0.28 × 0.14 mm
V = 695.49 (4) Å3
Bruker Kappa APEXII CCD area-detector diffractometer3482 independent reflections
Radiation source: fine-focus sealed tube3325 reflections with I > 2σ(I)
Graphite monochromatorRint = 0.025
φ and ω scansθmax = 28.4°, θmin = 2.2°
Absorption correction: multi-scan (SADABS; Bruker, 2005)h = −10→9
Tmin = 0.762, Tmax = 0.888k = −12→12
12850 measured reflectionsl = −13→13
Refinement on F2Primary atom site location: structure-invariant direct methods
Least-squares matrix: fullSecondary atom site location: difference Fourier map
R[F2 > 2σ(F2)] = 0.025Hydrogen site location: inferred from neighbouring sites
wR(F2) = 0.066H atoms treated by a mixture of independent and constrained refinement
S = 1.09w = 1/[σ2(Fo2) + (0.0239P)2 + 0.4466P] where P = (Fo2 + 2Fc2)/3
3482 reflections(Δ/σ)max < 0.001
216 parametersΔρmax = 0.40 e Å3
0 restraintsΔρmin = −0.39 e Å3
Geometry. All esds (except the esd in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell esds are taken into account individually in the estimation of esds in distances, angles and torsion angles; correlations between esds in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell esds is used for estimating esds involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > 2sigma(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/Ueq
Cu10.00000.00000.00000.01041 (7)
O10.11157 (12)0.17792 (10)0.00993 (10)0.01370 (18)
O2−0.11627 (12)0.27371 (10)0.15230 (11)0.0162 (2)
O30.49068 (16)0.66970 (15)0.32698 (17)0.0416 (4)
O4−0.42482 (13)−0.00030 (11)−0.33929 (11)0.0183 (2)
O50.29806 (13)−0.08287 (11)−0.07100 (11)0.0174 (2)
H510.377 (3)−0.044 (2)−0.139 (2)0.031 (5)*
H520.261 (3)−0.152 (3)−0.099 (3)0.045 (6)*
N1−0.00062 (14)0.08754 (11)−0.20468 (12)0.0117 (2)
N2−0.32207 (17)0.13253 (14)−0.56511 (13)0.0173 (2)
H21−0.241 (3)0.185 (2)−0.629 (2)0.024 (5)*
H22−0.409 (3)0.102 (2)−0.592 (2)0.034 (5)*
C10.04545 (17)0.26238 (13)0.09204 (14)0.0119 (2)
C20.17587 (17)0.35192 (13)0.12491 (14)0.0119 (2)
C30.35050 (17)0.30847 (14)0.11108 (15)0.0146 (2)
H30.39100.23050.07100.018*
C40.46457 (18)0.38186 (15)0.15737 (16)0.0171 (3)
H40.58110.35220.14940.021*
C50.40476 (18)0.49929 (15)0.21546 (16)0.0172 (3)
C60.23127 (18)0.54629 (15)0.22500 (16)0.0187 (3)
H60.19250.62680.26120.022*
C70.11731 (18)0.47245 (14)0.18029 (15)0.0161 (3)
H70.00130.50300.18710.019*
C80.5289 (2)0.57274 (18)0.26668 (19)0.0270 (3)
H80.651 (3)0.5350 (19)0.252 (2)0.024 (5)*
C9−0.14085 (17)0.06582 (13)−0.25139 (14)0.0120 (2)
H9−0.23650.0117−0.18640.014*
C10−0.14972 (17)0.12042 (13)−0.39217 (14)0.0121 (2)
C11−0.00706 (18)0.20287 (15)−0.48827 (15)0.0166 (3)
H11−0.00850.2413−0.58350.020*
C120.13731 (18)0.22679 (15)−0.43983 (15)0.0178 (3)
H120.23350.2823−0.50200.021*
C130.13671 (17)0.16727 (14)−0.29819 (15)0.0144 (2)
H130.23440.1828−0.26650.017*
C14−0.31061 (17)0.08129 (14)−0.43099 (14)0.0137 (2)
U11U22U33U12U13U23
Cu10.01132 (11)0.01179 (11)0.00973 (11)−0.00110 (8)−0.00490 (8)−0.00287 (8)
O10.0137 (4)0.0152 (4)0.0136 (4)−0.0023 (3)−0.0042 (3)−0.0049 (4)
O20.0112 (4)0.0197 (5)0.0182 (5)−0.0017 (4)−0.0034 (4)−0.0059 (4)
O30.0244 (6)0.0474 (8)0.0666 (10)−0.0024 (5)−0.0109 (6)−0.0415 (7)
O40.0175 (5)0.0246 (5)0.0135 (5)−0.0075 (4)−0.0063 (4)−0.0014 (4)
O50.0135 (5)0.0208 (5)0.0182 (5)−0.0008 (4)−0.0026 (4)−0.0066 (4)
N10.0113 (5)0.0128 (5)0.0120 (5)−0.0008 (4)−0.0039 (4)−0.0034 (4)
N20.0172 (6)0.0236 (6)0.0122 (6)−0.0057 (5)−0.0068 (4)−0.0017 (5)
C10.0134 (6)0.0119 (6)0.0108 (6)−0.0016 (4)−0.0056 (4)0.0001 (4)
C20.0126 (6)0.0120 (6)0.0109 (6)−0.0022 (4)−0.0035 (4)−0.0014 (4)
C30.0139 (6)0.0129 (6)0.0180 (6)0.0005 (5)−0.0043 (5)−0.0057 (5)
C40.0114 (6)0.0179 (6)0.0236 (7)0.0001 (5)−0.0058 (5)−0.0067 (5)
C50.0144 (6)0.0176 (6)0.0215 (7)−0.0033 (5)−0.0049 (5)−0.0072 (5)
C60.0163 (6)0.0155 (6)0.0264 (7)−0.0004 (5)−0.0041 (5)−0.0109 (5)
C70.0120 (6)0.0156 (6)0.0217 (7)0.0016 (5)−0.0051 (5)−0.0056 (5)
C80.0162 (7)0.0316 (8)0.0393 (9)−0.0031 (6)−0.0078 (6)−0.0194 (7)
C90.0116 (5)0.0131 (6)0.0120 (6)−0.0011 (4)−0.0038 (4)−0.0031 (5)
C100.0129 (6)0.0130 (6)0.0120 (6)0.0001 (4)−0.0049 (5)−0.0041 (5)
C110.0184 (6)0.0198 (6)0.0110 (6)−0.0030 (5)−0.0044 (5)−0.0011 (5)
C120.0149 (6)0.0213 (7)0.0154 (6)−0.0060 (5)−0.0018 (5)−0.0015 (5)
C130.0121 (6)0.0162 (6)0.0160 (6)−0.0016 (5)−0.0044 (5)−0.0048 (5)
C140.0143 (6)0.0156 (6)0.0134 (6)0.0001 (5)−0.0058 (5)−0.0054 (5)
Cu1—O11.9960 (9)C3—H30.9300
Cu1—O1i1.9960 (9)C4—C51.3869 (19)
Cu1—O52.3951 (10)C4—H40.9300
Cu1—O5i2.3951 (10)C5—C81.4807 (19)
Cu1—N12.0025 (11)C6—C51.3947 (19)
Cu1—N1i2.0025 (11)C6—H60.9300
O1—C11.2689 (16)C7—C21.3989 (18)
O2—C11.2512 (16)C7—C61.3824 (19)
O3—C81.201 (2)C7—H70.9300
O4—C141.2395 (16)C8—H80.990 (19)
O5—H510.80 (2)C9—H90.9300
O5—H520.87 (2)C10—C91.3864 (18)
N1—C91.3411 (16)C10—C111.3921 (18)
N1—C131.3449 (16)C10—C141.4981 (17)
N2—C141.3272 (17)C11—C121.3870 (19)
N2—H210.85 (2)C11—H110.9300
N2—H220.87 (2)C12—H120.9300
C1—C21.5103 (17)C13—C121.3816 (19)
C3—C21.3883 (18)C13—H130.9300
C3—C41.3899 (18)
O1—Cu1—O1i180.00 (5)C3—C4—H4120.0
O1—Cu1—O585.74 (4)C5—C4—C3120.09 (12)
O1i—Cu1—O594.26 (4)C5—C4—H4120.0
O1—Cu1—O5i94.26 (4)C4—C5—C6120.31 (12)
O1i—Cu1—O5i85.74 (4)C4—C5—C8118.53 (13)
O1—Cu1—N189.34 (4)C6—C5—C8121.16 (13)
O1i—Cu1—N190.66 (4)C5—C6—H6120.2
O1—Cu1—N1i90.66 (4)C7—C6—C5119.57 (12)
O1i—Cu1—N1i89.34 (4)C7—C6—H6120.2
O5i—Cu1—O5180.00 (2)C2—C7—H7119.9
N1—Cu1—O592.97 (4)C6—C7—C2120.25 (12)
N1i—Cu1—O587.03 (4)C6—C7—H7119.9
N1—Cu1—O5i87.03 (4)O3—C8—C5125.09 (15)
N1i—Cu1—O5i92.97 (4)O3—C8—H8118.9 (11)
N1i—Cu1—N1180.0C5—C8—H8116.0 (11)
C1—O1—Cu1127.13 (8)N1—C9—C10122.97 (12)
Cu1—O5—H51126.3 (15)N1—C9—H9118.5
Cu1—O5—H5290.8 (15)C10—C9—H9118.5
H51—O5—H52105 (2)C9—C10—C11118.17 (12)
C9—N1—Cu1119.55 (9)C9—C10—C14117.06 (11)
C9—N1—C13118.50 (11)C11—C10—C14124.72 (12)
C13—N1—Cu1121.95 (9)C10—C11—H11120.5
C14—N2—H21122.1 (13)C12—C11—C10118.98 (12)
C14—N2—H22118.5 (14)C12—C11—H11120.5
H21—N2—H22118.9 (19)C11—C12—H12120.4
O1—C1—C2116.43 (11)C13—C12—C11119.29 (12)
O2—C1—O1126.00 (12)C13—C12—H12120.4
O2—C1—C2117.50 (11)N1—C13—C12122.08 (12)
C3—C2—C1119.97 (11)N1—C13—H13119.0
C3—C2—C7119.90 (12)C12—C13—H13119.0
C7—C2—C1119.93 (11)O4—C14—N2122.45 (12)
C2—C3—C4119.81 (12)O4—C14—C10119.40 (12)
C2—C3—H3120.1N2—C14—C10118.11 (12)
C4—C3—H3120.1
O5—Cu1—O1—C1−150.51 (11)C4—C3—C2—C1−172.50 (12)
O5i—Cu1—O1—C129.49 (11)C4—C3—C2—C72.4 (2)
N1—Cu1—O1—C1116.46 (11)C2—C3—C4—C5−0.8 (2)
N1i—Cu1—O1—C1−63.54 (11)C3—C4—C5—C6−1.4 (2)
O1—Cu1—N1—C9−140.43 (10)C3—C4—C5—C8178.62 (14)
O1i—Cu1—N1—C939.57 (10)C4—C5—C8—O3−175.17 (18)
O1—Cu1—N1—C1340.10 (10)C6—C5—C8—O34.8 (3)
O1i—Cu1—N1—C13−139.90 (10)C7—C6—C5—C42.0 (2)
O5—Cu1—N1—C9133.87 (10)C7—C6—C5—C8−177.98 (14)
O5i—Cu1—N1—C9−46.13 (10)C6—C7—C2—C1173.14 (13)
O5—Cu1—N1—C13−45.60 (10)C6—C7—C2—C3−1.8 (2)
O5i—Cu1—N1—C13134.40 (10)C2—C7—C6—C5−0.4 (2)
Cu1—O1—C1—O2−21.17 (19)C11—C10—C9—N1−0.81 (19)
Cu1—O1—C1—C2155.74 (8)C14—C10—C9—N1176.96 (11)
Cu1—N1—C9—C10−178.70 (9)C9—C10—C11—C120.1 (2)
C13—N1—C9—C100.79 (19)C14—C10—C11—C12−177.50 (12)
Cu1—N1—C13—C12179.43 (10)C9—C10—C14—O4−2.22 (18)
C9—N1—C13—C12−0.05 (19)C9—C10—C14—N2179.90 (12)
O1—C1—C2—C3−22.27 (18)C11—C10—C14—O4175.39 (13)
O1—C1—C2—C7162.83 (12)C11—C10—C14—N2−2.5 (2)
O2—C1—C2—C3154.91 (12)C10—C11—C12—C130.6 (2)
O2—C1—C2—C7−19.98 (18)N1—C13—C12—C11−0.6 (2)
D—H···AD—HH···AD···AD—H···A
N2—H21···O2ii0.85 (2)2.100 (19)2.8675 (16)150 (2)
N2—H22···O4iii0.88 (2)2.00 (2)2.8685 (17)169 (2)
O5—H51···O4iv0.81 (2)2.11 (2)2.8930 (15)162 (2)
O5—H52···O2i0.87 (3)1.91 (3)2.7542 (15)163 (2)
C4—H4···O2iv0.932.463.3824 (18)175
C13—H13···O3v0.932.493.290 (2)144
C6—H6···Cgvi0.932.753.656 (2)166
Table 1

Selected bond lengths (Å)

Cu1—O11.9960 (9)
Cu1—O52.3951 (10)
Cu1—N12.0025 (11)
Table 2

Hydrogen-bond geometry (Å, °)

Cg is the centroid of the pyridine ring.

D—H⋯A D—HH⋯A DA D—H⋯A
N2—H21⋯O2i 0.85 (2)2.100 (19)2.8675 (16)150 (2)
N2—H22⋯O4ii 0.88 (2)2.00 (2)2.8685 (17)169 (2)
O5—H51⋯O4iii 0.81 (2)2.11 (2)2.8930 (15)162 (2)
O5—H52⋯O2iv 0.87 (3)1.91 (3)2.7542 (15)163 (2)
C4—H4⋯O2iii 0.932.463.3824 (18)175
C13—H13⋯O3v 0.932.493.290 (2)144
C6—H6⋯Cg vi 0.932.753.656 (2)166

Symmetry codes: (i) ; (ii) ; (iii) ; (iv) ; (v) ; (vi) .

  9 in total

1.  A short history of SHELX.

Authors:  George M Sheldrick
Journal:  Acta Crystallogr A       Date:  2007-12-21       Impact factor: 2.290

2.  Some aspects of copper metabolism in pellagra.

Authors:  K A Krishnamachari
Journal:  Am J Clin Nutr       Date:  1974-02       Impact factor: 7.045

3.  Diaqua-bis-(N,N-diethyl-nicotinamide-κN)bis-(4-ethyl-benzoato-κO)cobalt(II).

Authors:  Hacali Necefoğlu; Ali Maracı; Füreya Elif Ozbek; Barış Tercan; Tuncer Hökelek
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2011-04-22

4.  Diaqua-bis(2-bromo-benzoato-κO)bis-(nicotinamide-κN)zinc(II).

Authors:  Tuncer Hökelek; Hakan Dal; Barış Tercan; F Elif Ozbek; Hacali Necefoğlu
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2009-04-30

5.  Diaqua-bis(2-chloro-benzoato-κO)bis-(nicotinamide-κN)nickel(II).

Authors:  Tuncer Hökelek; Hakan Dal; Barış Tercan; F Elif Ozbek; Hacali Necefoğlu
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2009-03-31

6.  Diaqua-bis-(4-bromo-benzoato-κO)bis-(nicotinamide-κN)copper(II).

Authors:  Hacali Necefoğlu; Füreya Elif Ozbek; Vijdan Oztürk; Barış Tercan; Tuncer Hökelek
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2011-06-11

7.  Diaqua-bis-(4-formyl-benzoato-κO(1))bis-(nicotinamide-κN(1))nickel(II).

Authors:  Mustafa Sertçelik; Nagihan Caylak Delibaş; Hacali Necefoğlu; Tuncer Hökelek
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2012-06-20

8.  Diaqua-bis-(2-iodo-benzoato-κO)bis-(nicotinamide-κN(1))cobalt(II).

Authors:  Omür Aydın; Nagihan Caylak Delibaş; Hacali Necefoğlu; Tuncer Hökelek
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2012-03-31

9.  Structure validation in chemical crystallography.

Authors:  Anthony L Spek
Journal:  Acta Crystallogr D Biol Crystallogr       Date:  2009-01-20
  9 in total
  1 in total

1.  Diaqua-bis-(4-formyl-benzoato-κO(1))bis-(nicotinamide-κN(1))zinc.

Authors:  Mustafa Sertçelik; Nagihan Caylak Delibaş; Hacali Necefoğlu; Tuncer Hökelek
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2012-07-28
  1 in total

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