| Literature DB >> 22807707 |
Mustafa Sertçelik, Nagihan Caylak Delibaş, Hacali Necefoğlu, Tuncer Hökelek.
Abstract
In the title complex, [Cu(C(8)H(5)O(3))(2)(C(6)H(6)N(2)O)(2)(H(2)O)(2)], the Cu(II) cation is located on an inversion center and is coordinated by two 4-formyl-benzoate (FB) anions, two nicotinamide (NA) ligands and two water mol-ecules in an elongated distorted octa-hedral geometry. The dihedral angle between the carboxyl-ate group and the adjacent benzene ring is 23.00 (10)°, while the pyridine ring and the benzene ring are oriented at a dihedral angle of 85.34 (4)°. An intra-molecular O-H⋯O hydrogen bond occurs between coordinating water mol-ecule and the carboxyl-ate group. In the crystal, N-H⋯O, O-H⋯O and weak C-H⋯O hydrogen bonds link the mol-ecules into a three-dimensional supra-molecular network. A weak C-H⋯π inter-action also occurs in the crystal.Entities:
Year: 2012 PMID: 22807707 PMCID: PMC3393247 DOI: 10.1107/S1600536812028814
Source DB: PubMed Journal: Acta Crystallogr Sect E Struct Rep Online ISSN: 1600-5368
| [Cu(C8H5O3)2(C6H6N2O)2(H2O)2] | |
| Triclinic, | |
| Hall symbol: -P 1 | Mo |
| Cell parameters from 8185 reflections | |
| θ = 2.7–28.4° | |
| µ = 0.85 mm−1 | |
| α = 77.053 (3)° | |
| β = 74.041 (2)° | Block, blue |
| γ = 87.295 (3)° | 0.32 × 0.28 × 0.14 mm |
| Bruker Kappa APEXII CCD area-detector diffractometer | 3482 independent reflections |
| Radiation source: fine-focus sealed tube | 3325 reflections with |
| Graphite monochromator | |
| φ and ω scans | θmax = 28.4°, θmin = 2.2° |
| Absorption correction: multi-scan ( | |
| 12850 measured reflections |
| Refinement on | Primary atom site location: structure-invariant direct methods |
| Least-squares matrix: full | Secondary atom site location: difference Fourier map |
| Hydrogen site location: inferred from neighbouring sites | |
| H atoms treated by a mixture of independent and constrained refinement | |
| 3482 reflections | (Δ/σ)max < 0.001 |
| 216 parameters | Δρmax = 0.40 e Å−3 |
| 0 restraints | Δρmin = −0.39 e Å−3 |
| Geometry. All esds (except the esd in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell esds are taken into account individually in the estimation of esds in distances, angles and torsion angles; correlations between esds in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell esds is used for estimating esds involving l.s. planes. |
| Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > 2sigma(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger. |
| Cu1 | 0.0000 | 0.0000 | 0.0000 | 0.01041 (7) | |
| O1 | 0.11157 (12) | 0.17792 (10) | 0.00993 (10) | 0.01370 (18) | |
| O2 | −0.11627 (12) | 0.27371 (10) | 0.15230 (11) | 0.0162 (2) | |
| O3 | 0.49068 (16) | 0.66970 (15) | 0.32698 (17) | 0.0416 (4) | |
| O4 | −0.42482 (13) | −0.00030 (11) | −0.33929 (11) | 0.0183 (2) | |
| O5 | 0.29806 (13) | −0.08287 (11) | −0.07100 (11) | 0.0174 (2) | |
| H51 | 0.377 (3) | −0.044 (2) | −0.139 (2) | 0.031 (5)* | |
| H52 | 0.261 (3) | −0.152 (3) | −0.099 (3) | 0.045 (6)* | |
| N1 | −0.00062 (14) | 0.08754 (11) | −0.20468 (12) | 0.0117 (2) | |
| N2 | −0.32207 (17) | 0.13253 (14) | −0.56511 (13) | 0.0173 (2) | |
| H21 | −0.241 (3) | 0.185 (2) | −0.629 (2) | 0.024 (5)* | |
| H22 | −0.409 (3) | 0.102 (2) | −0.592 (2) | 0.034 (5)* | |
| C1 | 0.04545 (17) | 0.26238 (13) | 0.09204 (14) | 0.0119 (2) | |
| C2 | 0.17587 (17) | 0.35192 (13) | 0.12491 (14) | 0.0119 (2) | |
| C3 | 0.35050 (17) | 0.30847 (14) | 0.11108 (15) | 0.0146 (2) | |
| H3 | 0.3910 | 0.2305 | 0.0710 | 0.018* | |
| C4 | 0.46457 (18) | 0.38186 (15) | 0.15737 (16) | 0.0171 (3) | |
| H4 | 0.5811 | 0.3522 | 0.1494 | 0.021* | |
| C5 | 0.40476 (18) | 0.49929 (15) | 0.21546 (16) | 0.0172 (3) | |
| C6 | 0.23127 (18) | 0.54629 (15) | 0.22500 (16) | 0.0187 (3) | |
| H6 | 0.1925 | 0.6268 | 0.2612 | 0.022* | |
| C7 | 0.11731 (18) | 0.47245 (14) | 0.18029 (15) | 0.0161 (3) | |
| H7 | 0.0013 | 0.5030 | 0.1871 | 0.019* | |
| C8 | 0.5289 (2) | 0.57274 (18) | 0.26668 (19) | 0.0270 (3) | |
| H8 | 0.651 (3) | 0.5350 (19) | 0.252 (2) | 0.024 (5)* | |
| C9 | −0.14085 (17) | 0.06582 (13) | −0.25139 (14) | 0.0120 (2) | |
| H9 | −0.2365 | 0.0117 | −0.1864 | 0.014* | |
| C10 | −0.14972 (17) | 0.12042 (13) | −0.39217 (14) | 0.0121 (2) | |
| C11 | −0.00706 (18) | 0.20287 (15) | −0.48827 (15) | 0.0166 (3) | |
| H11 | −0.0085 | 0.2413 | −0.5835 | 0.020* | |
| C12 | 0.13731 (18) | 0.22679 (15) | −0.43983 (15) | 0.0178 (3) | |
| H12 | 0.2335 | 0.2823 | −0.5020 | 0.021* | |
| C13 | 0.13671 (17) | 0.16727 (14) | −0.29819 (15) | 0.0144 (2) | |
| H13 | 0.2344 | 0.1828 | −0.2665 | 0.017* | |
| C14 | −0.31061 (17) | 0.08129 (14) | −0.43099 (14) | 0.0137 (2) |
| Cu1 | 0.01132 (11) | 0.01179 (11) | 0.00973 (11) | −0.00110 (8) | −0.00490 (8) | −0.00287 (8) |
| O1 | 0.0137 (4) | 0.0152 (4) | 0.0136 (4) | −0.0023 (3) | −0.0042 (3) | −0.0049 (4) |
| O2 | 0.0112 (4) | 0.0197 (5) | 0.0182 (5) | −0.0017 (4) | −0.0034 (4) | −0.0059 (4) |
| O3 | 0.0244 (6) | 0.0474 (8) | 0.0666 (10) | −0.0024 (5) | −0.0109 (6) | −0.0415 (7) |
| O4 | 0.0175 (5) | 0.0246 (5) | 0.0135 (5) | −0.0075 (4) | −0.0063 (4) | −0.0014 (4) |
| O5 | 0.0135 (5) | 0.0208 (5) | 0.0182 (5) | −0.0008 (4) | −0.0026 (4) | −0.0066 (4) |
| N1 | 0.0113 (5) | 0.0128 (5) | 0.0120 (5) | −0.0008 (4) | −0.0039 (4) | −0.0034 (4) |
| N2 | 0.0172 (6) | 0.0236 (6) | 0.0122 (6) | −0.0057 (5) | −0.0068 (4) | −0.0017 (5) |
| C1 | 0.0134 (6) | 0.0119 (6) | 0.0108 (6) | −0.0016 (4) | −0.0056 (4) | 0.0001 (4) |
| C2 | 0.0126 (6) | 0.0120 (6) | 0.0109 (6) | −0.0022 (4) | −0.0035 (4) | −0.0014 (4) |
| C3 | 0.0139 (6) | 0.0129 (6) | 0.0180 (6) | 0.0005 (5) | −0.0043 (5) | −0.0057 (5) |
| C4 | 0.0114 (6) | 0.0179 (6) | 0.0236 (7) | 0.0001 (5) | −0.0058 (5) | −0.0067 (5) |
| C5 | 0.0144 (6) | 0.0176 (6) | 0.0215 (7) | −0.0033 (5) | −0.0049 (5) | −0.0072 (5) |
| C6 | 0.0163 (6) | 0.0155 (6) | 0.0264 (7) | −0.0004 (5) | −0.0041 (5) | −0.0109 (5) |
| C7 | 0.0120 (6) | 0.0156 (6) | 0.0217 (7) | 0.0016 (5) | −0.0051 (5) | −0.0056 (5) |
| C8 | 0.0162 (7) | 0.0316 (8) | 0.0393 (9) | −0.0031 (6) | −0.0078 (6) | −0.0194 (7) |
| C9 | 0.0116 (5) | 0.0131 (6) | 0.0120 (6) | −0.0011 (4) | −0.0038 (4) | −0.0031 (5) |
| C10 | 0.0129 (6) | 0.0130 (6) | 0.0120 (6) | 0.0001 (4) | −0.0049 (5) | −0.0041 (5) |
| C11 | 0.0184 (6) | 0.0198 (6) | 0.0110 (6) | −0.0030 (5) | −0.0044 (5) | −0.0011 (5) |
| C12 | 0.0149 (6) | 0.0213 (7) | 0.0154 (6) | −0.0060 (5) | −0.0018 (5) | −0.0015 (5) |
| C13 | 0.0121 (6) | 0.0162 (6) | 0.0160 (6) | −0.0016 (5) | −0.0044 (5) | −0.0048 (5) |
| C14 | 0.0143 (6) | 0.0156 (6) | 0.0134 (6) | 0.0001 (5) | −0.0058 (5) | −0.0054 (5) |
| Cu1—O1 | 1.9960 (9) | C3—H3 | 0.9300 |
| Cu1—O1i | 1.9960 (9) | C4—C5 | 1.3869 (19) |
| Cu1—O5 | 2.3951 (10) | C4—H4 | 0.9300 |
| Cu1—O5i | 2.3951 (10) | C5—C8 | 1.4807 (19) |
| Cu1—N1 | 2.0025 (11) | C6—C5 | 1.3947 (19) |
| Cu1—N1i | 2.0025 (11) | C6—H6 | 0.9300 |
| O1—C1 | 1.2689 (16) | C7—C2 | 1.3989 (18) |
| O2—C1 | 1.2512 (16) | C7—C6 | 1.3824 (19) |
| O3—C8 | 1.201 (2) | C7—H7 | 0.9300 |
| O4—C14 | 1.2395 (16) | C8—H8 | 0.990 (19) |
| O5—H51 | 0.80 (2) | C9—H9 | 0.9300 |
| O5—H52 | 0.87 (2) | C10—C9 | 1.3864 (18) |
| N1—C9 | 1.3411 (16) | C10—C11 | 1.3921 (18) |
| N1—C13 | 1.3449 (16) | C10—C14 | 1.4981 (17) |
| N2—C14 | 1.3272 (17) | C11—C12 | 1.3870 (19) |
| N2—H21 | 0.85 (2) | C11—H11 | 0.9300 |
| N2—H22 | 0.87 (2) | C12—H12 | 0.9300 |
| C1—C2 | 1.5103 (17) | C13—C12 | 1.3816 (19) |
| C3—C2 | 1.3883 (18) | C13—H13 | 0.9300 |
| C3—C4 | 1.3899 (18) | ||
| O1—Cu1—O1i | 180.00 (5) | C3—C4—H4 | 120.0 |
| O1—Cu1—O5 | 85.74 (4) | C5—C4—C3 | 120.09 (12) |
| O1i—Cu1—O5 | 94.26 (4) | C5—C4—H4 | 120.0 |
| O1—Cu1—O5i | 94.26 (4) | C4—C5—C6 | 120.31 (12) |
| O1i—Cu1—O5i | 85.74 (4) | C4—C5—C8 | 118.53 (13) |
| O1—Cu1—N1 | 89.34 (4) | C6—C5—C8 | 121.16 (13) |
| O1i—Cu1—N1 | 90.66 (4) | C5—C6—H6 | 120.2 |
| O1—Cu1—N1i | 90.66 (4) | C7—C6—C5 | 119.57 (12) |
| O1i—Cu1—N1i | 89.34 (4) | C7—C6—H6 | 120.2 |
| O5i—Cu1—O5 | 180.00 (2) | C2—C7—H7 | 119.9 |
| N1—Cu1—O5 | 92.97 (4) | C6—C7—C2 | 120.25 (12) |
| N1i—Cu1—O5 | 87.03 (4) | C6—C7—H7 | 119.9 |
| N1—Cu1—O5i | 87.03 (4) | O3—C8—C5 | 125.09 (15) |
| N1i—Cu1—O5i | 92.97 (4) | O3—C8—H8 | 118.9 (11) |
| N1i—Cu1—N1 | 180.0 | C5—C8—H8 | 116.0 (11) |
| C1—O1—Cu1 | 127.13 (8) | N1—C9—C10 | 122.97 (12) |
| Cu1—O5—H51 | 126.3 (15) | N1—C9—H9 | 118.5 |
| Cu1—O5—H52 | 90.8 (15) | C10—C9—H9 | 118.5 |
| H51—O5—H52 | 105 (2) | C9—C10—C11 | 118.17 (12) |
| C9—N1—Cu1 | 119.55 (9) | C9—C10—C14 | 117.06 (11) |
| C9—N1—C13 | 118.50 (11) | C11—C10—C14 | 124.72 (12) |
| C13—N1—Cu1 | 121.95 (9) | C10—C11—H11 | 120.5 |
| C14—N2—H21 | 122.1 (13) | C12—C11—C10 | 118.98 (12) |
| C14—N2—H22 | 118.5 (14) | C12—C11—H11 | 120.5 |
| H21—N2—H22 | 118.9 (19) | C11—C12—H12 | 120.4 |
| O1—C1—C2 | 116.43 (11) | C13—C12—C11 | 119.29 (12) |
| O2—C1—O1 | 126.00 (12) | C13—C12—H12 | 120.4 |
| O2—C1—C2 | 117.50 (11) | N1—C13—C12 | 122.08 (12) |
| C3—C2—C1 | 119.97 (11) | N1—C13—H13 | 119.0 |
| C3—C2—C7 | 119.90 (12) | C12—C13—H13 | 119.0 |
| C7—C2—C1 | 119.93 (11) | O4—C14—N2 | 122.45 (12) |
| C2—C3—C4 | 119.81 (12) | O4—C14—C10 | 119.40 (12) |
| C2—C3—H3 | 120.1 | N2—C14—C10 | 118.11 (12) |
| C4—C3—H3 | 120.1 | ||
| O5—Cu1—O1—C1 | −150.51 (11) | C4—C3—C2—C1 | −172.50 (12) |
| O5i—Cu1—O1—C1 | 29.49 (11) | C4—C3—C2—C7 | 2.4 (2) |
| N1—Cu1—O1—C1 | 116.46 (11) | C2—C3—C4—C5 | −0.8 (2) |
| N1i—Cu1—O1—C1 | −63.54 (11) | C3—C4—C5—C6 | −1.4 (2) |
| O1—Cu1—N1—C9 | −140.43 (10) | C3—C4—C5—C8 | 178.62 (14) |
| O1i—Cu1—N1—C9 | 39.57 (10) | C4—C5—C8—O3 | −175.17 (18) |
| O1—Cu1—N1—C13 | 40.10 (10) | C6—C5—C8—O3 | 4.8 (3) |
| O1i—Cu1—N1—C13 | −139.90 (10) | C7—C6—C5—C4 | 2.0 (2) |
| O5—Cu1—N1—C9 | 133.87 (10) | C7—C6—C5—C8 | −177.98 (14) |
| O5i—Cu1—N1—C9 | −46.13 (10) | C6—C7—C2—C1 | 173.14 (13) |
| O5—Cu1—N1—C13 | −45.60 (10) | C6—C7—C2—C3 | −1.8 (2) |
| O5i—Cu1—N1—C13 | 134.40 (10) | C2—C7—C6—C5 | −0.4 (2) |
| Cu1—O1—C1—O2 | −21.17 (19) | C11—C10—C9—N1 | −0.81 (19) |
| Cu1—O1—C1—C2 | 155.74 (8) | C14—C10—C9—N1 | 176.96 (11) |
| Cu1—N1—C9—C10 | −178.70 (9) | C9—C10—C11—C12 | 0.1 (2) |
| C13—N1—C9—C10 | 0.79 (19) | C14—C10—C11—C12 | −177.50 (12) |
| Cu1—N1—C13—C12 | 179.43 (10) | C9—C10—C14—O4 | −2.22 (18) |
| C9—N1—C13—C12 | −0.05 (19) | C9—C10—C14—N2 | 179.90 (12) |
| O1—C1—C2—C3 | −22.27 (18) | C11—C10—C14—O4 | 175.39 (13) |
| O1—C1—C2—C7 | 162.83 (12) | C11—C10—C14—N2 | −2.5 (2) |
| O2—C1—C2—C3 | 154.91 (12) | C10—C11—C12—C13 | 0.6 (2) |
| O2—C1—C2—C7 | −19.98 (18) | N1—C13—C12—C11 | −0.6 (2) |
| H··· | ||||
| N2—H21···O2ii | 0.85 (2) | 2.100 (19) | 2.8675 (16) | 150 (2) |
| N2—H22···O4iii | 0.88 (2) | 2.00 (2) | 2.8685 (17) | 169 (2) |
| O5—H51···O4iv | 0.81 (2) | 2.11 (2) | 2.8930 (15) | 162 (2) |
| O5—H52···O2i | 0.87 (3) | 1.91 (3) | 2.7542 (15) | 163 (2) |
| C4—H4···O2iv | 0.93 | 2.46 | 3.3824 (18) | 175 |
| C13—H13···O3v | 0.93 | 2.49 | 3.290 (2) | 144 |
| C6—H6··· | 0.93 | 2.75 | 3.656 (2) | 166 |
Selected bond lengths (Å)
| Cu1—O1 | 1.9960 (9) |
| Cu1—O5 | 2.3951 (10) |
| Cu1—N1 | 2.0025 (11) |
Hydrogen-bond geometry (Å, °)
Cg is the centroid of the pyridine ring.
|
|
| H⋯ |
|
|
|---|---|---|---|---|
| N2—H21⋯O2i | 0.85 (2) | 2.100 (19) | 2.8675 (16) | 150 (2) |
| N2—H22⋯O4ii | 0.88 (2) | 2.00 (2) | 2.8685 (17) | 169 (2) |
| O5—H51⋯O4iii | 0.81 (2) | 2.11 (2) | 2.8930 (15) | 162 (2) |
| O5—H52⋯O2iv | 0.87 (3) | 1.91 (3) | 2.7542 (15) | 163 (2) |
| C4—H4⋯O2iii | 0.93 | 2.46 | 3.3824 (18) | 175 |
| C13—H13⋯O3v | 0.93 | 2.49 | 3.290 (2) | 144 |
| C6—H6⋯ | 0.93 | 2.75 | 3.656 (2) | 166 |
Symmetry codes: (i) ; (ii) ; (iii) ; (iv) ; (v) ; (vi) .