Literature DB >> 22589871

Diaqua-bis-(2-iodo-benzoato-κO)bis-(nicotinamide-κN(1))cobalt(II).

Omür Aydın, Nagihan Caylak Delibaş, Hacali Necefoğlu, Tuncer Hökelek.   

Abstract

In the title complex, [Co(C(7)H(4)IO(2))(2)(C(6)H(6)N(2)O)(2)(H(2)O)(2)], the Co(II) cation is located on an inversion center and is coordinated by two monodentate 2-iodo-benzoate (IB) anions, two nicotin-amide (NA) ligands and two water mol-ecules. The four O atoms in the equatorial plane around the Co(II) cation form a slightly distorted square-planar arrangement, while the slightly distorted octa-hedral coordination is completed by the two N atoms of the NA ligands in the axial positions. The dihedral angle between the carboxyl-ate group and the adjacent benzene ring is 22.3 (3)°, while the pyridine ring and the benzene ring are oriented at a dihedral angle of 84.59 (13)°. Intra-molecular O-H⋯O hydrogen bonding occurs between the carboxyl-ate group and coordinated water mol-ecule. In the crystal, N-H⋯O, O-H⋯O and weak C-H⋯O hydrogen bonds link the mol-ecules into a three-dimensional supra-molecular network.

Entities:  

Year:  2012        PMID: 22589871      PMCID: PMC3343903          DOI: 10.1107/S160053681201330X

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For niacin, see: Krishnamachari (1974 ▶). For the nicotinic acid derivative N,N-diethyl­nicotinamide, see: Bigoli et al. (1972 ▶). For related structures, see: Hökelek et al. (1996 ▶, 2009 ▶); Hökelek & Necefoğlu (1998 ▶, 2007 ▶); Necefoğlu et al. (2011 ▶). For bond-length data, see: Allen et al. (1987 ▶).

Experimental

Crystal data

[Co(C7H4IO2)2(C6H6N2O)2(H2O)2] M = 833.22 Monoclinic, a = 7.9475 (2) Å b = 19.7551 (4) Å c = 9.7070 (3) Å β = 108.642 (3)° V = 1444.07 (7) Å3 Z = 2 Mo Kα radiation μ = 2.79 mm−1 T = 100 K 0.35 × 0.22 × 0.17 mm

Data collection

Bruker Kappa APEXII CCD area-detector diffractometer Absorption correction: multi-scan (SADABS; Bruker, 2005 ▶) T min = 0.484, T max = 0.623 12419 measured reflections 3618 independent reflections 3378 reflections with I > 2σ(I) R int = 0.030

Refinement

R[F 2 > 2σ(F 2)] = 0.046 wR(F 2) = 0.110 S = 1.16 3618 reflections 203 parameters 6 restraints H atoms treated by a mixture of independent and constrained refinement Δρmax = 2.60 e Å−3 Δρmin = −2.03 e Å−3 Data collection: APEX2 (Bruker, 2007 ▶); cell refinement: SAINT (Bruker, 2007 ▶); data reduction: SAINT; program(s) used to solve structure: SHELXS97 (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: ORTEP-3 for Windows (Farrugia, 1997 ▶); software used to prepare material for publication: WinGX (Farrugia, 1999 ▶) and PLATON (Spek, 2009 ▶). Crystal structure: contains datablock(s) I, global. DOI: 10.1107/S160053681201330X/xu5493sup1.cif Structure factors: contains datablock(s) I. DOI: 10.1107/S160053681201330X/xu5493Isup2.hkl Additional supplementary materials: crystallographic information; 3D view; checkCIF report
[Co(C7H4IO2)2(C6H6N2O)2(H2O)2]F(000) = 810
Mr = 833.22Dx = 1.916 Mg m3
Monoclinic, P21/cMo Kα radiation, λ = 0.71073 Å
Hall symbol: -P 2ybcCell parameters from 8593 reflections
a = 7.9475 (2) Åθ = 2.4–28.5°
b = 19.7551 (4) ŵ = 2.79 mm1
c = 9.7070 (3) ÅT = 100 K
β = 108.642 (3)°Block, pink
V = 1444.07 (7) Å30.35 × 0.22 × 0.17 mm
Z = 2
Bruker Kappa APEXII CCD area-detector diffractometer3618 independent reflections
Radiation source: fine-focus sealed tube3378 reflections with I > 2σ(I)
Graphite monochromatorRint = 0.030
φ and ω scansθmax = 28.5°, θmin = 2.1°
Absorption correction: multi-scan (SADABS; Bruker, 2005)h = −10→9
Tmin = 0.484, Tmax = 0.623k = −23→26
12419 measured reflectionsl = −12→13
Refinement on F2Primary atom site location: structure-invariant direct methods
Least-squares matrix: fullSecondary atom site location: difference Fourier map
R[F2 > 2σ(F2)] = 0.046Hydrogen site location: inferred from neighbouring sites
wR(F2) = 0.110H atoms treated by a mixture of independent and constrained refinement
S = 1.16w = 1/[σ2(Fo2) + (0.0244P)2 + 14.519P] where P = (Fo2 + 2Fc2)/3
3618 reflections(Δ/σ)max < 0.001
203 parametersΔρmax = 2.60 e Å3
6 restraintsΔρmin = −2.03 e Å3
Geometry. All esds (except the esd in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell esds are taken into account individually in the estimation of esds in distances, angles and torsion angles; correlations between esds in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell esds is used for estimating esds involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > 2sigma(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/Ueq
I10.12711 (5)0.234042 (17)0.36675 (4)0.01979 (11)
Co10.00000.50000.00000.00988 (19)
O10.1064 (5)0.37344 (19)0.2233 (4)0.0159 (7)
O2−0.1200 (5)0.41184 (18)0.0387 (4)0.0133 (7)
O30.4451 (5)0.4942 (2)−0.3249 (4)0.0209 (8)
O40.2604 (5)0.45921 (18)0.0942 (4)0.0143 (7)
H410.340 (7)0.482 (3)0.158 (5)0.03 (2)*
H420.232 (9)0.426 (2)0.140 (6)0.023 (17)*
N10.0033 (6)0.4599 (2)−0.2032 (4)0.0123 (8)
N20.3548 (6)0.4252 (3)−0.5189 (5)0.0189 (9)
H210.277 (7)0.401 (3)−0.582 (6)0.022 (17)*
H220.443 (7)0.439 (4)−0.544 (8)0.03 (2)*
C1−0.0541 (7)0.3739 (2)0.1473 (5)0.0123 (9)
C2−0.1818 (6)0.3282 (2)0.1896 (5)0.0120 (9)
C3−0.1334 (7)0.2707 (3)0.2769 (5)0.0137 (9)
C4−0.2597 (7)0.2321 (3)0.3134 (6)0.0179 (10)
H4−0.22590.19330.36960.022*
C5−0.4357 (8)0.2521 (3)0.2652 (6)0.0224 (11)
H5−0.52030.22640.28930.027*
C6−0.4873 (7)0.3098 (3)0.1819 (6)0.0196 (10)
H6−0.60530.32370.15190.024*
C7−0.3609 (7)0.3466 (3)0.1436 (5)0.0154 (10)
H7−0.39630.38480.08550.019*
C80.1496 (7)0.4667 (2)−0.2414 (5)0.0133 (9)
H80.24490.4905−0.17950.016*
C90.1669 (7)0.4400 (2)−0.3686 (5)0.0125 (9)
C100.0245 (7)0.4041 (3)−0.4594 (5)0.0149 (9)
H100.03120.3854−0.54540.018*
C11−0.1281 (7)0.3965 (3)−0.4207 (5)0.0164 (10)
H11−0.22460.3722−0.47970.020*
C12−0.1345 (7)0.4255 (3)−0.2930 (5)0.0157 (10)
H12−0.23780.4211−0.26820.019*
C130.3344 (7)0.4547 (3)−0.4023 (5)0.0143 (9)
U11U22U33U12U13U23
I10.01340 (17)0.01704 (18)0.02576 (18)0.00204 (12)0.00180 (13)0.00652 (13)
Co10.0102 (4)0.0108 (4)0.0076 (4)−0.0005 (3)0.0014 (3)−0.0001 (3)
O10.0127 (17)0.0198 (18)0.0117 (15)−0.0025 (14)−0.0011 (13)0.0023 (13)
O20.0149 (17)0.0130 (17)0.0096 (15)−0.0024 (13)0.0005 (13)−0.0001 (12)
O30.0160 (19)0.032 (2)0.0151 (17)−0.0088 (16)0.0054 (15)−0.0074 (15)
O40.0125 (17)0.0159 (18)0.0128 (15)−0.0008 (13)0.0016 (13)0.0008 (13)
N10.014 (2)0.013 (2)0.0095 (17)0.0006 (15)0.0024 (15)0.0000 (14)
N20.015 (2)0.028 (3)0.016 (2)−0.0072 (18)0.0081 (18)−0.0081 (18)
C10.015 (2)0.010 (2)0.010 (2)−0.0014 (18)0.0032 (18)−0.0025 (16)
C20.011 (2)0.014 (2)0.010 (2)−0.0026 (17)0.0020 (17)−0.0017 (16)
C30.013 (2)0.016 (2)0.010 (2)0.0013 (18)0.0017 (18)−0.0011 (17)
C40.019 (3)0.015 (2)0.020 (2)0.001 (2)0.007 (2)0.0013 (19)
C50.016 (3)0.026 (3)0.029 (3)−0.004 (2)0.012 (2)0.001 (2)
C60.014 (2)0.020 (3)0.025 (3)0.000 (2)0.007 (2)−0.003 (2)
C70.012 (2)0.015 (2)0.016 (2)−0.0004 (18)−0.0005 (19)0.0002 (18)
C80.014 (2)0.011 (2)0.011 (2)−0.0011 (18)−0.0003 (18)0.0004 (16)
C90.013 (2)0.013 (2)0.010 (2)0.0000 (18)0.0023 (18)−0.0010 (17)
C100.014 (2)0.018 (2)0.012 (2)−0.0004 (19)0.0029 (18)−0.0030 (18)
C110.013 (2)0.018 (2)0.016 (2)−0.0031 (19)0.0017 (19)−0.0048 (18)
C120.015 (2)0.017 (2)0.015 (2)−0.0002 (19)0.0038 (19)−0.0005 (18)
C130.013 (2)0.017 (2)0.011 (2)−0.0014 (18)0.0018 (18)0.0002 (17)
I1—C32.102 (5)C2—C71.397 (7)
Co1—O22.077 (3)C3—C41.393 (7)
Co1—O2i2.077 (3)C4—H40.9300
Co1—O42.135 (4)C5—C41.383 (8)
Co1—O4i2.135 (4)C5—C61.383 (8)
Co1—N12.134 (4)C5—H50.9300
Co1—N1i2.134 (4)C6—H60.9300
O1—C11.253 (6)C7—C61.384 (7)
O2—C11.263 (6)C7—H70.9300
O3—C131.235 (6)C8—C91.390 (6)
O4—H410.855 (18)C8—H80.9300
O4—H420.86 (2)C9—C131.497 (7)
N1—C81.335 (7)C10—C91.386 (7)
N1—C121.345 (6)C10—C111.389 (7)
N2—C131.328 (6)C10—H100.9300
N2—H210.86 (2)C11—C121.381 (7)
N2—H220.86 (2)C11—H110.9300
C2—C11.510 (7)C12—H120.9300
C2—C31.396 (7)
O2i—Co1—O2180.0C4—C3—I1113.6 (4)
O2—Co1—N189.86 (14)C4—C3—C2121.3 (5)
O2i—Co1—N190.14 (14)C3—C4—H4120.3
O2—Co1—N1i90.14 (14)C5—C4—C3119.4 (5)
O2i—Co1—N1i89.86 (14)C5—C4—H4120.3
N1i—Co1—N1180.0C4—C5—H5119.6
O2—Co1—O492.53 (14)C6—C5—C4120.8 (5)
O2i—Co1—O487.47 (14)C6—C5—H5119.6
O2—Co1—O4i87.47 (14)C5—C6—C7119.0 (5)
O2i—Co1—O4i92.53 (14)C5—C6—H6120.5
O4i—Co1—O4180.00 (18)C7—C6—H6120.5
N1—Co1—O487.66 (15)C2—C7—H7119.0
N1i—Co1—O492.34 (15)C6—C7—C2122.1 (5)
N1—Co1—O4i92.34 (15)C6—C7—H7119.0
N1i—Co1—O4i87.66 (15)N1—C8—C9123.4 (5)
C1—O2—Co1123.9 (3)N1—C8—H8118.3
Co1—O4—H41120 (5)C9—C8—H8118.3
Co1—O4—H4298 (5)C8—C9—C13117.9 (4)
H42—O4—H41106 (4)C10—C9—C8117.8 (5)
C8—N1—Co1119.2 (3)C10—C9—C13124.2 (4)
C8—N1—C12118.2 (4)C9—C10—C11119.3 (5)
C12—N1—Co1122.6 (3)C9—C10—H10120.3
C13—N2—H21126 (5)C11—C10—H10120.3
C13—N2—H22116 (5)C10—C11—H11120.5
H21—N2—H22116 (7)C12—C11—C10118.9 (5)
O1—C1—O2124.6 (5)C12—C11—H11120.5
O1—C1—C2118.8 (4)N1—C12—C11122.3 (5)
O2—C1—C2116.5 (4)N1—C12—H12118.8
C3—C2—C1125.0 (4)C11—C12—H12118.8
C3—C2—C7117.4 (5)O3—C13—N2122.6 (5)
C7—C2—C1117.5 (4)O3—C13—C9120.0 (4)
C2—C3—I1125.1 (4)N2—C13—C9117.4 (4)
N1—Co1—O2—C1121.0 (4)C1—C2—C3—I1−0.8 (7)
N1i—Co1—O2—C1−59.0 (4)C1—C2—C3—C4178.6 (5)
O4—Co1—O2—C133.4 (4)C7—C2—C3—I1−177.7 (3)
O4i—Co1—O2—C1−146.6 (4)C7—C2—C3—C41.7 (7)
O2—Co1—N1—C8−135.9 (4)C1—C2—C7—C6−177.2 (5)
O2i—Co1—N1—C844.1 (4)C3—C2—C7—C6−0.1 (7)
O2—Co1—N1—C1241.5 (4)I1—C3—C4—C5177.8 (4)
O2i—Co1—N1—C12−138.5 (4)C2—C3—C4—C5−1.6 (8)
O4—Co1—N1—C8−43.3 (4)C6—C5—C4—C3−0.1 (8)
O4i—Co1—N1—C8136.7 (4)C4—C5—C6—C71.7 (8)
O4—Co1—N1—C12134.1 (4)C2—C7—C6—C5−1.6 (8)
O4i—Co1—N1—C12−45.9 (4)N1—C8—C9—C10−0.4 (7)
Co1—O2—C1—O1−19.5 (7)N1—C8—C9—C13176.6 (4)
Co1—O2—C1—C2158.0 (3)C8—C9—C13—O3−6.2 (7)
Co1—N1—C8—C9177.4 (4)C8—C9—C13—N2175.6 (5)
C12—N1—C8—C9−0.2 (7)C10—C9—C13—O3170.7 (5)
Co1—N1—C12—C11−176.4 (4)C10—C9—C13—N2−7.6 (8)
C8—N1—C12—C111.1 (7)C11—C10—C9—C80.2 (7)
C3—C2—C1—O1−21.1 (7)C11—C10—C9—C13−176.7 (5)
C3—C2—C1—O2161.2 (5)C9—C10—C11—C120.6 (8)
C7—C2—C1—O1155.8 (5)C10—C11—C12—N1−1.3 (8)
C7—C2—C1—O2−21.9 (6)
D—H···AD—HH···AD···AD—H···A
N2—H21···O1ii0.86 (6)2.02 (6)2.837 (6)158 (5)
N2—H22···O3iii0.86 (6)2.21 (7)2.984 (7)151 (7)
O4—H41···O3iv0.86 (5)2.00 (5)2.827 (5)162 (5)
O4—H42···O10.86 (5)1.80 (6)2.631 (5)161 (7)
C10—H10···O1ii0.932.513.400 (6)160
Table 1

Hydrogen-bond geometry (Å, °)

D—H⋯AD—HH⋯ADAD—H⋯A
N2—H21⋯O1i0.86 (6)2.02 (6)2.837 (6)158 (5)
N2—H22⋯O3ii0.86 (6)2.21 (7)2.984 (7)151 (7)
O4—H41⋯O3iii0.86 (5)2.00 (5)2.827 (5)162 (5)
O4—H42⋯O10.86 (5)1.80 (6)2.631 (5)161 (7)
C10—H10⋯O1i0.932.513.400 (6)160

Symmetry codes: (i) ; (ii) ; (iii) .

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Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2012-06-30

3.  Diaqua-bis-(4-formyl-benzoato-κO(1))bis-(nicotinamide-κN(1))nickel(II).

Authors:  Mustafa Sertçelik; Nagihan Caylak Delibaş; Hacali Necefoğlu; Tuncer Hökelek
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4.  Diaqua-bis-(N,N-diethyl-nicotinamide-κN(1))bis-(4-formyl-benzoato-κO(1))zinc.

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5.  Diaqua-bis-(2-iodo-benzoato-κO)bis-(nicotinamide-κN(1))copper(II).

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