| Literature DB >> 22589871 |
Omür Aydın, Nagihan Caylak Delibaş, Hacali Necefoğlu, Tuncer Hökelek.
Abstract
In the title complex, [Co(C(7)H(4)IO(2))(2)(C(6)H(6)N(2)O)(2)(H(2)O)(2)], the Co(II) cation is located on an inversion center and is coordinated by two monodentate 2-iodo-benzoate (IB) anions, two nicotin-amide (NA) ligands and two water mol-ecules. The four O atoms in the equatorial plane around the Co(II) cation form a slightly distorted square-planar arrangement, while the slightly distorted octa-hedral coordination is completed by the two N atoms of the NA ligands in the axial positions. The dihedral angle between the carboxyl-ate group and the adjacent benzene ring is 22.3 (3)°, while the pyridine ring and the benzene ring are oriented at a dihedral angle of 84.59 (13)°. Intra-molecular O-H⋯O hydrogen bonding occurs between the carboxyl-ate group and coordinated water mol-ecule. In the crystal, N-H⋯O, O-H⋯O and weak C-H⋯O hydrogen bonds link the mol-ecules into a three-dimensional supra-molecular network.Entities:
Year: 2012 PMID: 22589871 PMCID: PMC3343903 DOI: 10.1107/S160053681201330X
Source DB: PubMed Journal: Acta Crystallogr Sect E Struct Rep Online ISSN: 1600-5368
| [Co(C7H4IO2)2(C6H6N2O)2(H2O)2] | |
| Monoclinic, | Mo |
| Hall symbol: -P 2ybc | Cell parameters from 8593 reflections |
| θ = 2.4–28.5° | |
| µ = 2.79 mm−1 | |
| β = 108.642 (3)° | Block, pink |
| 0.35 × 0.22 × 0.17 mm | |
| Bruker Kappa APEXII CCD area-detector diffractometer | 3618 independent reflections |
| Radiation source: fine-focus sealed tube | 3378 reflections with |
| Graphite monochromator | |
| φ and ω scans | θmax = 28.5°, θmin = 2.1° |
| Absorption correction: multi-scan ( | |
| 12419 measured reflections |
| Refinement on | Primary atom site location: structure-invariant direct methods |
| Least-squares matrix: full | Secondary atom site location: difference Fourier map |
| Hydrogen site location: inferred from neighbouring sites | |
| H atoms treated by a mixture of independent and constrained refinement | |
| 3618 reflections | (Δ/σ)max < 0.001 |
| 203 parameters | Δρmax = 2.60 e Å−3 |
| 6 restraints | Δρmin = −2.03 e Å−3 |
| Geometry. All esds (except the esd in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell esds are taken into account individually in the estimation of esds in distances, angles and torsion angles; correlations between esds in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell esds is used for estimating esds involving l.s. planes. |
| Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > 2sigma(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger. |
| I1 | 0.12711 (5) | 0.234042 (17) | 0.36675 (4) | 0.01979 (11) | |
| Co1 | 0.0000 | 0.5000 | 0.0000 | 0.00988 (19) | |
| O1 | 0.1064 (5) | 0.37344 (19) | 0.2233 (4) | 0.0159 (7) | |
| O2 | −0.1200 (5) | 0.41184 (18) | 0.0387 (4) | 0.0133 (7) | |
| O3 | 0.4451 (5) | 0.4942 (2) | −0.3249 (4) | 0.0209 (8) | |
| O4 | 0.2604 (5) | 0.45921 (18) | 0.0942 (4) | 0.0143 (7) | |
| H41 | 0.340 (7) | 0.482 (3) | 0.158 (5) | 0.03 (2)* | |
| H42 | 0.232 (9) | 0.426 (2) | 0.140 (6) | 0.023 (17)* | |
| N1 | 0.0033 (6) | 0.4599 (2) | −0.2032 (4) | 0.0123 (8) | |
| N2 | 0.3548 (6) | 0.4252 (3) | −0.5189 (5) | 0.0189 (9) | |
| H21 | 0.277 (7) | 0.401 (3) | −0.582 (6) | 0.022 (17)* | |
| H22 | 0.443 (7) | 0.439 (4) | −0.544 (8) | 0.03 (2)* | |
| C1 | −0.0541 (7) | 0.3739 (2) | 0.1473 (5) | 0.0123 (9) | |
| C2 | −0.1818 (6) | 0.3282 (2) | 0.1896 (5) | 0.0120 (9) | |
| C3 | −0.1334 (7) | 0.2707 (3) | 0.2769 (5) | 0.0137 (9) | |
| C4 | −0.2597 (7) | 0.2321 (3) | 0.3134 (6) | 0.0179 (10) | |
| H4 | −0.2259 | 0.1933 | 0.3696 | 0.022* | |
| C5 | −0.4357 (8) | 0.2521 (3) | 0.2652 (6) | 0.0224 (11) | |
| H5 | −0.5203 | 0.2264 | 0.2893 | 0.027* | |
| C6 | −0.4873 (7) | 0.3098 (3) | 0.1819 (6) | 0.0196 (10) | |
| H6 | −0.6053 | 0.3237 | 0.1519 | 0.024* | |
| C7 | −0.3609 (7) | 0.3466 (3) | 0.1436 (5) | 0.0154 (10) | |
| H7 | −0.3963 | 0.3848 | 0.0855 | 0.019* | |
| C8 | 0.1496 (7) | 0.4667 (2) | −0.2414 (5) | 0.0133 (9) | |
| H8 | 0.2449 | 0.4905 | −0.1795 | 0.016* | |
| C9 | 0.1669 (7) | 0.4400 (2) | −0.3686 (5) | 0.0125 (9) | |
| C10 | 0.0245 (7) | 0.4041 (3) | −0.4594 (5) | 0.0149 (9) | |
| H10 | 0.0312 | 0.3854 | −0.5454 | 0.018* | |
| C11 | −0.1281 (7) | 0.3965 (3) | −0.4207 (5) | 0.0164 (10) | |
| H11 | −0.2246 | 0.3722 | −0.4797 | 0.020* | |
| C12 | −0.1345 (7) | 0.4255 (3) | −0.2930 (5) | 0.0157 (10) | |
| H12 | −0.2378 | 0.4211 | −0.2682 | 0.019* | |
| C13 | 0.3344 (7) | 0.4547 (3) | −0.4023 (5) | 0.0143 (9) |
| I1 | 0.01340 (17) | 0.01704 (18) | 0.02576 (18) | 0.00204 (12) | 0.00180 (13) | 0.00652 (13) |
| Co1 | 0.0102 (4) | 0.0108 (4) | 0.0076 (4) | −0.0005 (3) | 0.0014 (3) | −0.0001 (3) |
| O1 | 0.0127 (17) | 0.0198 (18) | 0.0117 (15) | −0.0025 (14) | −0.0011 (13) | 0.0023 (13) |
| O2 | 0.0149 (17) | 0.0130 (17) | 0.0096 (15) | −0.0024 (13) | 0.0005 (13) | −0.0001 (12) |
| O3 | 0.0160 (19) | 0.032 (2) | 0.0151 (17) | −0.0088 (16) | 0.0054 (15) | −0.0074 (15) |
| O4 | 0.0125 (17) | 0.0159 (18) | 0.0128 (15) | −0.0008 (13) | 0.0016 (13) | 0.0008 (13) |
| N1 | 0.014 (2) | 0.013 (2) | 0.0095 (17) | 0.0006 (15) | 0.0024 (15) | 0.0000 (14) |
| N2 | 0.015 (2) | 0.028 (3) | 0.016 (2) | −0.0072 (18) | 0.0081 (18) | −0.0081 (18) |
| C1 | 0.015 (2) | 0.010 (2) | 0.010 (2) | −0.0014 (18) | 0.0032 (18) | −0.0025 (16) |
| C2 | 0.011 (2) | 0.014 (2) | 0.010 (2) | −0.0026 (17) | 0.0020 (17) | −0.0017 (16) |
| C3 | 0.013 (2) | 0.016 (2) | 0.010 (2) | 0.0013 (18) | 0.0017 (18) | −0.0011 (17) |
| C4 | 0.019 (3) | 0.015 (2) | 0.020 (2) | 0.001 (2) | 0.007 (2) | 0.0013 (19) |
| C5 | 0.016 (3) | 0.026 (3) | 0.029 (3) | −0.004 (2) | 0.012 (2) | 0.001 (2) |
| C6 | 0.014 (2) | 0.020 (3) | 0.025 (3) | 0.000 (2) | 0.007 (2) | −0.003 (2) |
| C7 | 0.012 (2) | 0.015 (2) | 0.016 (2) | −0.0004 (18) | −0.0005 (19) | 0.0002 (18) |
| C8 | 0.014 (2) | 0.011 (2) | 0.011 (2) | −0.0011 (18) | −0.0003 (18) | 0.0004 (16) |
| C9 | 0.013 (2) | 0.013 (2) | 0.010 (2) | 0.0000 (18) | 0.0023 (18) | −0.0010 (17) |
| C10 | 0.014 (2) | 0.018 (2) | 0.012 (2) | −0.0004 (19) | 0.0029 (18) | −0.0030 (18) |
| C11 | 0.013 (2) | 0.018 (2) | 0.016 (2) | −0.0031 (19) | 0.0017 (19) | −0.0048 (18) |
| C12 | 0.015 (2) | 0.017 (2) | 0.015 (2) | −0.0002 (19) | 0.0038 (19) | −0.0005 (18) |
| C13 | 0.013 (2) | 0.017 (2) | 0.011 (2) | −0.0014 (18) | 0.0018 (18) | 0.0002 (17) |
| I1—C3 | 2.102 (5) | C2—C7 | 1.397 (7) |
| Co1—O2 | 2.077 (3) | C3—C4 | 1.393 (7) |
| Co1—O2i | 2.077 (3) | C4—H4 | 0.9300 |
| Co1—O4 | 2.135 (4) | C5—C4 | 1.383 (8) |
| Co1—O4i | 2.135 (4) | C5—C6 | 1.383 (8) |
| Co1—N1 | 2.134 (4) | C5—H5 | 0.9300 |
| Co1—N1i | 2.134 (4) | C6—H6 | 0.9300 |
| O1—C1 | 1.253 (6) | C7—C6 | 1.384 (7) |
| O2—C1 | 1.263 (6) | C7—H7 | 0.9300 |
| O3—C13 | 1.235 (6) | C8—C9 | 1.390 (6) |
| O4—H41 | 0.855 (18) | C8—H8 | 0.9300 |
| O4—H42 | 0.86 (2) | C9—C13 | 1.497 (7) |
| N1—C8 | 1.335 (7) | C10—C9 | 1.386 (7) |
| N1—C12 | 1.345 (6) | C10—C11 | 1.389 (7) |
| N2—C13 | 1.328 (6) | C10—H10 | 0.9300 |
| N2—H21 | 0.86 (2) | C11—C12 | 1.381 (7) |
| N2—H22 | 0.86 (2) | C11—H11 | 0.9300 |
| C2—C1 | 1.510 (7) | C12—H12 | 0.9300 |
| C2—C3 | 1.396 (7) | ||
| O2i—Co1—O2 | 180.0 | C4—C3—I1 | 113.6 (4) |
| O2—Co1—N1 | 89.86 (14) | C4—C3—C2 | 121.3 (5) |
| O2i—Co1—N1 | 90.14 (14) | C3—C4—H4 | 120.3 |
| O2—Co1—N1i | 90.14 (14) | C5—C4—C3 | 119.4 (5) |
| O2i—Co1—N1i | 89.86 (14) | C5—C4—H4 | 120.3 |
| N1i—Co1—N1 | 180.0 | C4—C5—H5 | 119.6 |
| O2—Co1—O4 | 92.53 (14) | C6—C5—C4 | 120.8 (5) |
| O2i—Co1—O4 | 87.47 (14) | C6—C5—H5 | 119.6 |
| O2—Co1—O4i | 87.47 (14) | C5—C6—C7 | 119.0 (5) |
| O2i—Co1—O4i | 92.53 (14) | C5—C6—H6 | 120.5 |
| O4i—Co1—O4 | 180.00 (18) | C7—C6—H6 | 120.5 |
| N1—Co1—O4 | 87.66 (15) | C2—C7—H7 | 119.0 |
| N1i—Co1—O4 | 92.34 (15) | C6—C7—C2 | 122.1 (5) |
| N1—Co1—O4i | 92.34 (15) | C6—C7—H7 | 119.0 |
| N1i—Co1—O4i | 87.66 (15) | N1—C8—C9 | 123.4 (5) |
| C1—O2—Co1 | 123.9 (3) | N1—C8—H8 | 118.3 |
| Co1—O4—H41 | 120 (5) | C9—C8—H8 | 118.3 |
| Co1—O4—H42 | 98 (5) | C8—C9—C13 | 117.9 (4) |
| H42—O4—H41 | 106 (4) | C10—C9—C8 | 117.8 (5) |
| C8—N1—Co1 | 119.2 (3) | C10—C9—C13 | 124.2 (4) |
| C8—N1—C12 | 118.2 (4) | C9—C10—C11 | 119.3 (5) |
| C12—N1—Co1 | 122.6 (3) | C9—C10—H10 | 120.3 |
| C13—N2—H21 | 126 (5) | C11—C10—H10 | 120.3 |
| C13—N2—H22 | 116 (5) | C10—C11—H11 | 120.5 |
| H21—N2—H22 | 116 (7) | C12—C11—C10 | 118.9 (5) |
| O1—C1—O2 | 124.6 (5) | C12—C11—H11 | 120.5 |
| O1—C1—C2 | 118.8 (4) | N1—C12—C11 | 122.3 (5) |
| O2—C1—C2 | 116.5 (4) | N1—C12—H12 | 118.8 |
| C3—C2—C1 | 125.0 (4) | C11—C12—H12 | 118.8 |
| C3—C2—C7 | 117.4 (5) | O3—C13—N2 | 122.6 (5) |
| C7—C2—C1 | 117.5 (4) | O3—C13—C9 | 120.0 (4) |
| C2—C3—I1 | 125.1 (4) | N2—C13—C9 | 117.4 (4) |
| N1—Co1—O2—C1 | 121.0 (4) | C1—C2—C3—I1 | −0.8 (7) |
| N1i—Co1—O2—C1 | −59.0 (4) | C1—C2—C3—C4 | 178.6 (5) |
| O4—Co1—O2—C1 | 33.4 (4) | C7—C2—C3—I1 | −177.7 (3) |
| O4i—Co1—O2—C1 | −146.6 (4) | C7—C2—C3—C4 | 1.7 (7) |
| O2—Co1—N1—C8 | −135.9 (4) | C1—C2—C7—C6 | −177.2 (5) |
| O2i—Co1—N1—C8 | 44.1 (4) | C3—C2—C7—C6 | −0.1 (7) |
| O2—Co1—N1—C12 | 41.5 (4) | I1—C3—C4—C5 | 177.8 (4) |
| O2i—Co1—N1—C12 | −138.5 (4) | C2—C3—C4—C5 | −1.6 (8) |
| O4—Co1—N1—C8 | −43.3 (4) | C6—C5—C4—C3 | −0.1 (8) |
| O4i—Co1—N1—C8 | 136.7 (4) | C4—C5—C6—C7 | 1.7 (8) |
| O4—Co1—N1—C12 | 134.1 (4) | C2—C7—C6—C5 | −1.6 (8) |
| O4i—Co1—N1—C12 | −45.9 (4) | N1—C8—C9—C10 | −0.4 (7) |
| Co1—O2—C1—O1 | −19.5 (7) | N1—C8—C9—C13 | 176.6 (4) |
| Co1—O2—C1—C2 | 158.0 (3) | C8—C9—C13—O3 | −6.2 (7) |
| Co1—N1—C8—C9 | 177.4 (4) | C8—C9—C13—N2 | 175.6 (5) |
| C12—N1—C8—C9 | −0.2 (7) | C10—C9—C13—O3 | 170.7 (5) |
| Co1—N1—C12—C11 | −176.4 (4) | C10—C9—C13—N2 | −7.6 (8) |
| C8—N1—C12—C11 | 1.1 (7) | C11—C10—C9—C8 | 0.2 (7) |
| C3—C2—C1—O1 | −21.1 (7) | C11—C10—C9—C13 | −176.7 (5) |
| C3—C2—C1—O2 | 161.2 (5) | C9—C10—C11—C12 | 0.6 (8) |
| C7—C2—C1—O1 | 155.8 (5) | C10—C11—C12—N1 | −1.3 (8) |
| C7—C2—C1—O2 | −21.9 (6) |
| H··· | ||||
| N2—H21···O1ii | 0.86 (6) | 2.02 (6) | 2.837 (6) | 158 (5) |
| N2—H22···O3iii | 0.86 (6) | 2.21 (7) | 2.984 (7) | 151 (7) |
| O4—H41···O3iv | 0.86 (5) | 2.00 (5) | 2.827 (5) | 162 (5) |
| O4—H42···O1 | 0.86 (5) | 1.80 (6) | 2.631 (5) | 161 (7) |
| C10—H10···O1ii | 0.93 | 2.51 | 3.400 (6) | 160 |
Hydrogen-bond geometry (Å, °)
| H⋯ | ||||
|---|---|---|---|---|
| N2—H21⋯O1i | 0.86 (6) | 2.02 (6) | 2.837 (6) | 158 (5) |
| N2—H22⋯O3ii | 0.86 (6) | 2.21 (7) | 2.984 (7) | 151 (7) |
| O4—H41⋯O3iii | 0.86 (5) | 2.00 (5) | 2.827 (5) | 162 (5) |
| O4—H42⋯O1 | 0.86 (5) | 1.80 (6) | 2.631 (5) | 161 (7) |
| C10—H10⋯O1i | 0.93 | 2.51 | 3.400 (6) | 160 |
Symmetry codes: (i) ; (ii) ; (iii) .