Literature DB >> 21583825

Diaqua-bis(2-bromo-benzoato-κO)bis-(nicotinamide-κN)zinc(II).

Tuncer Hökelek, Hakan Dal, Barış Tercan, F Elif Ozbek, Hacali Necefoğlu.   

Abstract

The title Zn(II) complex, [Zn(C(7)H(4)BrO(2))(2)(C(6)H(6)N(2)O)(2)(H(2)O)(2)], is centrosymmetric with the Zn atom on an inversion center. The mol-ecule contains two 2-bromo-benzoate (BB) and two nicotinamide (NA) ligands and two coordinated water mol-ecules, all ligands being monodentate. The four O atoms in the equatorial plane around the Zn atom form a slightly distorted square-planar arrangement, while the slightly distorted octa-hedral coordination is completed by the two N atoms of the NA ligands in the axial positions. The dihedral angle between the carboxyl group and the adjacent benzene ring is 31.14 (12)°, while the pyridine and benzene rings are oriented at a dihedral angle of 83.54 (5)°. In the crystal structure, O-H⋯O and N-H⋯O hydrogen bonds link the mol-ecules into infinite chains. A weak C-H⋯π inter-action is also present.

Entities:  

Year:  2009        PMID: 21583825      PMCID: PMC2977639          DOI: 10.1107/S1600536809015645

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For general backgroud to the properties of transition metal complexes with biochemically active ligands, see: Antolini et al. (1982 ▶); Bigoli et al. (1972 ▶); Krishnamachari (1974 ▶); Nad­zhafov et al. (1981 ▶); Shnulin et al. (1981 ▶). For related structures, see: Hökelek et al. (1995 ▶, 1997 ▶, 2007 ▶, 2008 ▶); Hökelek & Necefoğlu (1996 ▶, 1997 ▶, 2007 ▶).

Experimental

Crystal data

[Zn(C7H4BrO2)2(C6H6N2O)2(H2O)2] M = 745.68 Monoclinic, a = 7.9111 (2) Å b = 18.1604 (4) Å c = 9.8345 (3) Å β = 106.346 (1)° V = 1355.80 (6) Å3 Z = 2 Mo Kα radiation μ = 3.91 mm−1 T = 100 K 0.43 × 0.33 × 0.24 mm

Data collection

Bruker Kappa APEXII CCD area-detector diffctometer diffractometer Absorption correction: multi-scan (SADABS; Bruker, 2005 ▶) T min = 0.230, T max = 0.393 12839 measured reflections 3416 independent reflections 2948 reflections with I > 2σ(I) R int = 0.081

Refinement

R[F 2 > 2σ(F 2)] = 0.026 wR(F 2) = 0.065 S = 1.06 3416 reflections 203 parameters 1 restraint H atoms treated by a mixture of independent and constrained refinement Δρmax = 0.77 e Å−3 Δρmin = −0.51 e Å−3 Data collection: APEX2 (Bruker, 2007 ▶); cell refinement: SAINT (Bruker, 2007 ▶); data reduction: SAINT; program(s) used to solve structure: SHELXS97 (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: ORTEP-3 for Windows (Farrugia, 1997 ▶); software used to prepare material for publication: WinGX (Farrugia, 1999 ▶). Crystal structure: contains datablocks I, global. DOI: 10.1107/S1600536809015645/xu2517sup1.cif Structure factors: contains datablocks I. DOI: 10.1107/S1600536809015645/xu2517Isup2.hkl Additional supplementary materials: crystallographic information; 3D view; checkCIF report
[Zn(C7H4BrO2)2(C6H6N2O)2(H2O)2]F(000) = 744
Mr = 745.68Dx = 1.827 Mg m3
Monoclinic, P21/nMo Kα radiation, λ = 0.71073 Å
Hall symbol: -P 2ynCell parameters from 7038 reflections
a = 7.9111 (2) Åθ = 2.4–28.4°
b = 18.1604 (4) ŵ = 3.91 mm1
c = 9.8345 (3) ÅT = 100 K
β = 106.346 (1)°Block, colorless
V = 1355.80 (6) Å30.43 × 0.33 × 0.24 mm
Z = 2
Bruker Kappa APEXII CCD area-detector diffctometer diffractometer3416 independent reflections
Radiation source: fine-focus sealed tube2948 reflections with I > 2σ(I)
graphiteRint = 0.081
φ and ω scansθmax = 28.5°, θmin = 2.2°
Absorption correction: multi-scan (SADABS; Bruker, 2005)h = −8→10
Tmin = 0.230, Tmax = 0.393k = −24→23
12839 measured reflectionsl = −13→13
Refinement on F2Primary atom site location: structure-invariant direct methods
Least-squares matrix: fullSecondary atom site location: difference Fourier map
R[F2 > 2σ(F2)] = 0.026Hydrogen site location: inferred from neighbouring sites
wR(F2) = 0.065H atoms treated by a mixture of independent and constrained refinement
S = 1.06w = 1/[σ2(Fo2) + (0.0306P)2] where P = (Fo2 + 2Fc2)/3
3416 reflections(Δ/σ)max = 0.001
203 parametersΔρmax = 0.77 e Å3
1 restraintΔρmin = −0.51 e Å3
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/Ueq
Br10.90022 (2)0.210886 (11)0.671443 (19)0.02134 (7)
Zn11.00000.50001.00000.01096 (8)
O11.11803 (16)0.40204 (7)0.95347 (12)0.0142 (3)
O20.89388 (16)0.36730 (8)0.77083 (12)0.0163 (3)
O31.45377 (17)0.51058 (8)0.67688 (12)0.0186 (3)
O41.26223 (16)0.54361 (8)1.09090 (12)0.0145 (3)
H411.238 (4)0.5757 (17)1.143 (3)0.048 (9)*
H421.343 (3)0.5165 (13)1.146 (2)0.030 (6)*
N11.00804 (19)0.54424 (9)0.80326 (14)0.0126 (3)
N21.3585 (2)0.58056 (11)0.48109 (16)0.0193 (4)
H211.272 (3)0.6009 (14)0.427 (2)0.031 (7)*
H221.447 (4)0.5666 (15)0.452 (3)0.031 (7)*
C11.0529 (2)0.36488 (10)0.84198 (16)0.0125 (3)
C21.1764 (2)0.31803 (10)0.78680 (16)0.0127 (3)
C31.3510 (2)0.34108 (11)0.81090 (17)0.0149 (4)
H31.39070.38150.86920.018*
C41.4661 (2)0.30548 (11)0.75047 (18)0.0177 (4)
H41.58160.32190.76830.021*
C51.4089 (2)0.24503 (12)0.66281 (17)0.0171 (4)
H51.48500.22200.61930.021*
C61.2392 (2)0.21919 (11)0.64049 (17)0.0157 (4)
H61.20140.17800.58380.019*
C71.1250 (2)0.25506 (11)0.70332 (16)0.0133 (4)
C81.1546 (2)0.53766 (10)0.76238 (16)0.0133 (4)
H81.24980.51270.82160.016*
C91.1722 (2)0.56605 (10)0.63648 (16)0.0126 (3)
C101.0301 (2)0.60450 (11)0.54960 (17)0.0162 (4)
H101.03810.62510.46500.019*
C110.8777 (2)0.61176 (11)0.58996 (17)0.0171 (4)
H110.78150.63720.53330.020*
C120.8705 (2)0.58033 (11)0.71677 (17)0.0147 (4)
H120.76690.58430.74310.018*
C131.3397 (2)0.55091 (11)0.59974 (17)0.0147 (4)
U11U22U33U12U13U23
Br10.01423 (10)0.02129 (13)0.02759 (11)−0.00591 (7)0.00440 (7)−0.00471 (7)
Zn10.00902 (14)0.01609 (17)0.00751 (12)0.00017 (10)0.00189 (10)0.00020 (10)
O10.0127 (6)0.0182 (7)0.0104 (5)0.0032 (5)0.0010 (4)−0.0004 (5)
O20.0098 (6)0.0249 (8)0.0128 (5)0.0021 (5)0.0010 (5)−0.0018 (5)
O30.0129 (6)0.0297 (9)0.0133 (6)0.0062 (6)0.0040 (5)0.0051 (5)
O40.0102 (6)0.0197 (8)0.0127 (6)0.0009 (5)0.0019 (5)−0.0007 (5)
N10.0102 (7)0.0158 (8)0.0112 (6)0.0000 (6)0.0020 (5)−0.0002 (5)
N20.0131 (8)0.0325 (10)0.0139 (7)0.0068 (7)0.0064 (6)0.0069 (7)
C10.0120 (8)0.0154 (9)0.0099 (7)−0.0004 (7)0.0029 (6)0.0031 (6)
C20.0135 (8)0.0145 (9)0.0091 (7)0.0019 (7)0.0018 (6)0.0018 (6)
C30.0128 (8)0.0163 (10)0.0139 (7)0.0002 (7)0.0011 (6)−0.0006 (7)
C40.0114 (8)0.0231 (11)0.0185 (8)−0.0010 (7)0.0038 (7)0.0016 (7)
C50.0169 (9)0.0211 (11)0.0149 (8)0.0056 (7)0.0069 (7)0.0030 (7)
C60.0176 (9)0.0162 (10)0.0122 (7)0.0016 (7)0.0023 (7)−0.0007 (6)
C70.0111 (8)0.0168 (10)0.0107 (7)−0.0008 (7)0.0007 (6)0.0016 (6)
C80.0119 (8)0.0154 (10)0.0115 (7)0.0013 (7)0.0013 (6)0.0004 (6)
C90.0115 (8)0.0155 (10)0.0109 (7)0.0003 (6)0.0033 (6)−0.0008 (6)
C100.0146 (8)0.0238 (11)0.0103 (7)0.0025 (7)0.0038 (6)0.0042 (7)
C110.0132 (8)0.0216 (11)0.0142 (7)0.0048 (7)0.0003 (7)0.0042 (7)
C120.0122 (8)0.0180 (10)0.0141 (7)0.0018 (7)0.0038 (6)0.0001 (7)
C130.0120 (8)0.0199 (10)0.0119 (7)0.0002 (7)0.0031 (6)−0.0016 (6)
Br1—C71.8950 (18)C4—C31.380 (3)
Zn1—O1i2.1182 (13)C4—H40.9300
Zn1—O12.1182 (13)C5—C41.390 (3)
Zn1—O4i2.1647 (12)C5—C61.380 (3)
Zn1—O42.1647 (12)C5—H50.9300
Zn1—N12.1124 (14)C6—H60.9300
Zn1—N1i2.1124 (14)C7—C21.400 (3)
O1—C11.267 (2)C7—C61.392 (3)
O2—C11.256 (2)C8—C91.384 (2)
O3—C131.242 (2)C8—H80.9300
O4—H410.83 (3)C10—C91.393 (2)
O4—H420.869 (16)C10—C111.378 (3)
N1—C81.335 (2)C10—H100.9300
N1—C121.347 (2)C11—C121.387 (3)
N2—H210.83 (2)C11—H110.9300
N2—H220.86 (3)C12—H120.9300
C1—C21.507 (3)C13—N21.331 (2)
C2—C31.399 (2)C13—C91.494 (2)
C3—H30.9300
O1i—Zn1—O1180.0C4—C3—C2121.78 (17)
O1—Zn1—O488.11 (5)C4—C3—H3119.1
O1i—Zn1—O491.89 (5)C3—C4—C5119.88 (17)
O1—Zn1—O4i91.89 (5)C3—C4—H4120.1
O1i—Zn1—O4i88.11 (5)C5—C4—H4120.1
O4i—Zn1—O4180.0C4—C5—H5120.0
N1—Zn1—O189.59 (5)C6—C5—C4119.94 (17)
N1i—Zn1—O190.41 (5)C6—C5—H5120.0
N1—Zn1—O1i90.41 (5)C5—C6—C7119.62 (17)
N1i—Zn1—O1i89.59 (5)C5—C6—H6120.2
N1—Zn1—O488.09 (5)C7—C6—H6120.2
N1i—Zn1—O491.91 (5)C2—C7—Br1123.15 (14)
N1—Zn1—O4i91.91 (5)C6—C7—Br1115.13 (14)
N1i—Zn1—O4i88.09 (5)C6—C7—C2121.70 (16)
N1—Zn1—N1i180.000 (1)N1—C8—C9123.40 (15)
Zn1—O4—H42120.3 (18)N1—C8—H8118.3
Zn1—O4—H4199 (2)C9—C8—H8118.3
H42—O4—H41106 (2)C8—C9—C10117.95 (17)
C1—O1—Zn1122.52 (11)C8—C9—C13117.85 (15)
C8—N1—Zn1119.62 (11)C10—C9—C13124.15 (15)
C8—N1—C12117.94 (15)C9—C10—H10120.3
C12—N1—Zn1122.42 (12)C11—C10—C9119.46 (16)
C13—N2—H21117.7 (18)C11—C10—H10120.3
C13—N2—H22118.2 (17)C10—C11—C12118.67 (16)
H21—N2—H22121 (2)C10—C11—H11120.7
O1—C1—C2117.73 (15)C12—C11—H11120.7
O2—C1—O1124.27 (17)N1—C12—C11122.55 (17)
O2—C1—C2117.91 (15)N1—C12—H12118.7
C3—C2—C1118.66 (17)C11—C12—H12118.7
C3—C2—C7116.98 (16)O3—C13—N2122.19 (18)
C7—C2—C1124.19 (16)O3—C13—C9120.18 (16)
C2—C3—H3119.1N2—C13—C9117.61 (16)
O4i—Zn1—O1—C136.30 (14)C1—C2—C3—C4−172.78 (16)
O4—Zn1—O1—C1−143.70 (14)C7—C2—C3—C42.7 (3)
N1—Zn1—O1—C1−55.59 (14)C5—C4—C3—C20.1 (3)
N1i—Zn1—O1—C1124.41 (14)C6—C5—C4—C3−2.3 (3)
O1i—Zn1—N1—C8134.53 (14)C4—C5—C6—C71.6 (3)
O1—Zn1—N1—C8−45.47 (14)Br1—C7—C2—C1−10.0 (2)
O1i—Zn1—N1—C12−44.44 (14)Br1—C7—C2—C3174.80 (12)
O1—Zn1—N1—C12135.56 (14)C6—C7—C2—C1171.77 (16)
O4i—Zn1—N1—C8−137.35 (14)C6—C7—C2—C3−3.4 (2)
O4—Zn1—N1—C842.65 (14)Br1—C7—C6—C5−177.00 (13)
O4i—Zn1—N1—C1243.68 (14)C2—C7—C6—C51.4 (3)
O4—Zn1—N1—C12−136.32 (14)N1—C8—C9—C101.1 (3)
Zn1—O1—C1—O2−22.3 (2)N1—C8—C9—C13−176.47 (16)
Zn1—O1—C1—C2154.15 (12)C11—C10—C9—C8−1.2 (3)
Zn1—N1—C8—C9−178.88 (14)C11—C10—C9—C13176.27 (18)
C12—N1—C8—C90.1 (3)C9—C10—C11—C120.0 (3)
Zn1—N1—C12—C11177.59 (15)C10—C11—C12—N11.3 (3)
C8—N1—C12—C11−1.4 (3)O3—C13—C9—C84.0 (3)
O1—C1—C2—C3−30.2 (2)O3—C13—C9—C10−173.46 (18)
O1—C1—C2—C7154.63 (17)N2—C13—C9—C8−177.63 (18)
O2—C1—C2—C3146.41 (17)N2—C13—C9—C104.9 (3)
O2—C1—C2—C7−28.7 (3)
D—H···AD—HH···AD···AD—H···A
N2—H21···O2ii0.83 (2)2.10 (2)2.870 (2)155 (2)
O4—H41···O2i0.83 (3)1.84 (3)2.6339 (19)159 (3)
C11—H11···Cg1iii0.932.873.600 (3)136
Table 1

Selected bond lengths (Å)

Zn1—O12.1182 (13)
Zn1—O42.1647 (12)
Zn1—N12.1124 (14)
Table 2

Hydrogen-bond geometry (Å, °)

D—H⋯AD—HH⋯ADAD—H⋯A
N2—H21⋯O2i0.83 (2)2.10 (2)2.870 (2)155 (2)
O4—H41⋯O2ii0.83 (3)1.84 (3)2.6339 (19)159 (3)
C11—H11⋯Cg1iii0.932.873.600 (3)136

Symmetry codes: (i) ; (ii) ; (iii) . Cg1 is the centroid of the C2–C7 ring.

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