Literature DB >> 22969460

Diaqua-bis-(2-iodo-benzoato-κO)bis-(nicotinamide-κN(1))copper(II).

Omür Aydın, Nagihan Caylak Delibaş, Hacali Necefoğlu, Tuncer Hökelek.   

Abstract

In the title complex, [Cu(C(7)H(4)IO(2))(2)(C(6)H(6)N(2)O)(2)(H(2)O)(2)], the Cu(II) cation is located on an inversion center and is coordinated by two monodentate 2-iodo-benzoate (IB) anions, two nicotinamide (NA) ligands and two water mol-ecules in a distorted octa-hedral coordination geometry. The dihedral angle between the carboxyl-ate group and the adjacent benzene ring is 32.12 (14)°, while the pyridine ring and the benzene ring are oriented at a dihedral angle of 82.02 (5)°. The coordinating water mol-ecule links with the carboxyl-ate group via an intra-molecular O-H⋯O hydrogen bond. In the crystal, N-H⋯O, O-H⋯O and weak C-H⋯O hydrogen bonds link the mol-ecules into a three-dimensional supra-molecular network.

Entities:  

Year:  2012        PMID: 22969460      PMCID: PMC3435587          DOI: 10.1107/S1600536812034587

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For literature on niacin, see: Krishnamachari (1974 ▶). For information on the nicotinic acid derivative N,N-diethyl­nicotinamide, see: Bigoli et al. (1972 ▶). For related structures, see: Aydın et al. (2012 ▶); Hökelek et al. (2009 ▶); Necefoğlu et al. (2011 ▶); Sertçelik et al. (2012 ▶); Sertçelik et al. (2009 ▶). For bond-length data, see: Allen et al. (1987 ▶).

Experimental

Crystal data

[Cu(C7H4IO2)2(C6H6N2O)2(H2O)2] M = 837.85 Monoclinic, a = 8.1617 (2) Å b = 18.3365 (4) Å c = 9.7047 (3) Å β = 103.573 (3)° V = 1411.81 (7) Å3 Z = 2 Mo Kα radiation μ = 3.02 mm−1 T = 100 K 0.39 × 0.36 × 0.24 mm

Data collection

Bruker Kappa APEXII CCD area-detector diffractometer Absorption correction: multi-scan (SADABS; Bruker, 2005 ▶) T min = 0.528, T max = 0.661 13216 measured reflections 3531 independent reflections 3337 reflections with I > 2σ(I) R int = 0.018

Refinement

R[F 2 > 2σ(F 2)] = 0.021 wR(F 2) = 0.058 S = 1.13 3531 reflections 203 parameters H atoms treated by a mixture of independent and constrained refinement Δρmax = 0.97 e Å−3 Δρmin = −0.50 e Å−3 Data collection: APEX2 (Bruker, 2007 ▶); cell refinement: SAINT (Bruker, 2007 ▶); data reduction: SAINT; program(s) used to solve structure: SHELXS97 (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: ORTEP-3 for Windows (Farrugia, 1997 ▶); software used to prepare material for publication: WinGX (Farrugia, 1999 ▶) and PLATON (Spek, 2009 ▶). Crystal structure: contains datablock(s) I, global. DOI: 10.1107/S1600536812034587/xu5599sup1.cif Structure factors: contains datablock(s) I. DOI: 10.1107/S1600536812034587/xu5599Isup2.hkl Additional supplementary materials: crystallographic information; 3D view; checkCIF report
[Cu(C7H4IO2)2(C6H6N2O)2(H2O)2]F(000) = 814
Mr = 837.85Dx = 1.971 Mg m3
Monoclinic, P21/nMo Kα radiation, λ = 0.71073 Å
Hall symbol: -P 2ynCell parameters from 7325 reflections
a = 8.1617 (2) Åθ = 2.8–28.3°
b = 18.3365 (4) ŵ = 3.02 mm1
c = 9.7047 (3) ÅT = 100 K
β = 103.573 (3)°Block, blue
V = 1411.81 (7) Å30.39 × 0.36 × 0.24 mm
Z = 2
Bruker Kappa APEXII CCD area-detector diffractometer3531 independent reflections
Radiation source: fine-focus sealed tube3337 reflections with I > 2σ(I)
Graphite monochromatorRint = 0.018
φ and ω scansθmax = 28.4°, θmin = 2.2°
Absorption correction: multi-scan (SADABS; Bruker, 2005)h = −10→10
Tmin = 0.528, Tmax = 0.661k = −24→24
13216 measured reflectionsl = −10→12
Refinement on F2Primary atom site location: structure-invariant direct methods
Least-squares matrix: fullSecondary atom site location: difference Fourier map
R[F2 > 2σ(F2)] = 0.021Hydrogen site location: inferred from neighbouring sites
wR(F2) = 0.058H atoms treated by a mixture of independent and constrained refinement
S = 1.13w = 1/[σ2(Fo2) + (0.0285P)2 + 1.437P] where P = (Fo2 + 2Fc2)/3
3531 reflections(Δ/σ)max = 0.001
203 parametersΔρmax = 0.97 e Å3
0 restraintsΔρmin = −0.50 e Å3
Geometry. All esds (except the esd in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell esds are taken into account individually in the estimation of esds in distances, angles and torsion angles; correlations between esds in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell esds is used for estimating esds involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > 2sigma(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/Ueq
Cu10.00000.50000.00000.01102 (8)
I10.120179 (18)0.213804 (8)0.323774 (16)0.02225 (6)
O1−0.10863 (18)0.40869 (8)0.04600 (14)0.0137 (3)
O20.10292 (18)0.37645 (8)0.22737 (15)0.0163 (3)
O30.4441 (2)0.48850 (9)−0.32723 (15)0.0195 (3)
O4−0.2967 (2)0.54420 (9)−0.08965 (16)0.0174 (3)
H41−0.252 (5)0.571 (2)−0.145 (4)0.045 (10)*
H42−0.369 (5)0.521 (2)−0.140 (4)0.056 (12)*
N10.0134 (2)0.45775 (9)−0.18686 (17)0.0116 (3)
N20.3517 (2)0.42184 (11)−0.52508 (19)0.0191 (4)
H210.434 (4)0.4370 (16)−0.555 (3)0.024 (7)*
H220.276 (4)0.3983 (16)−0.578 (3)0.026 (8)*
C1−0.0459 (2)0.37253 (10)0.1582 (2)0.0116 (3)
C2−0.1668 (2)0.32473 (11)0.2144 (2)0.0117 (3)
C3−0.1182 (2)0.26188 (11)0.2949 (2)0.0120 (3)
C4−0.2309 (3)0.22441 (11)0.3571 (2)0.0162 (4)
H4−0.19580.18310.41160.019*
C5−0.3955 (3)0.24892 (12)0.3375 (2)0.0180 (4)
H5−0.47030.22470.38070.022*
C6−0.4487 (3)0.30965 (12)0.2535 (2)0.0177 (4)
H6−0.55990.32540.23820.021*
C7−0.3354 (3)0.34687 (11)0.1925 (2)0.0147 (4)
H7−0.37220.38730.13590.018*
C80.1566 (2)0.46254 (10)−0.2307 (2)0.0119 (4)
H80.24950.4847−0.17170.014*
C90.1720 (2)0.43569 (10)−0.36104 (19)0.0113 (3)
C100.0335 (3)0.40108 (11)−0.4471 (2)0.0153 (4)
H100.04080.3815−0.53380.018*
C11−0.1159 (3)0.39604 (12)−0.4024 (2)0.0164 (4)
H11−0.21010.3733−0.45850.020*
C12−0.1209 (3)0.42577 (11)−0.2720 (2)0.0142 (4)
H12−0.22120.4235−0.24240.017*
C130.3339 (3)0.45019 (11)−0.4031 (2)0.0140 (4)
U11U22U33U12U13U23
Cu10.01365 (16)0.01161 (15)0.00929 (15)−0.00216 (12)0.00570 (12)−0.00079 (11)
I10.01407 (8)0.01936 (8)0.03321 (10)0.00596 (5)0.00532 (6)0.00443 (5)
O10.0148 (7)0.0151 (7)0.0114 (6)−0.0026 (5)0.0036 (5)0.0004 (5)
O20.0112 (7)0.0219 (7)0.0152 (7)−0.0038 (6)0.0019 (5)0.0012 (5)
O30.0158 (7)0.0289 (8)0.0142 (7)−0.0075 (6)0.0046 (6)−0.0058 (6)
O40.0148 (7)0.0222 (8)0.0150 (7)−0.0012 (6)0.0028 (6)0.0021 (6)
N10.0112 (8)0.0128 (7)0.0115 (7)−0.0007 (6)0.0044 (6)0.0003 (6)
N20.0149 (9)0.0301 (10)0.0146 (8)−0.0072 (8)0.0082 (7)−0.0074 (7)
C10.0119 (9)0.0124 (8)0.0112 (8)−0.0013 (7)0.0042 (7)−0.0025 (6)
C20.0115 (9)0.0128 (8)0.0115 (8)−0.0014 (7)0.0041 (7)−0.0010 (6)
C30.0088 (9)0.0132 (8)0.0139 (9)0.0005 (7)0.0020 (7)−0.0011 (7)
C40.0185 (10)0.0138 (9)0.0163 (9)−0.0032 (8)0.0042 (8)0.0020 (7)
C50.0153 (10)0.0195 (10)0.0211 (10)−0.0053 (8)0.0083 (8)0.0003 (8)
C60.0111 (9)0.0190 (10)0.0235 (10)0.0000 (8)0.0052 (8)−0.0006 (8)
C70.0142 (9)0.0136 (9)0.0160 (9)0.0006 (7)0.0030 (7)0.0008 (7)
C80.0113 (9)0.0135 (9)0.0113 (8)−0.0013 (7)0.0037 (7)−0.0001 (7)
C90.0103 (8)0.0136 (8)0.0109 (8)−0.0011 (7)0.0044 (7)0.0002 (6)
C100.0148 (10)0.0195 (10)0.0121 (9)−0.0026 (8)0.0039 (7)−0.0033 (7)
C110.0138 (9)0.0202 (10)0.0150 (9)−0.0058 (8)0.0028 (7)−0.0037 (7)
C120.0129 (9)0.0150 (9)0.0158 (9)−0.0026 (7)0.0053 (7)−0.0008 (7)
C130.0111 (9)0.0183 (9)0.0128 (9)−0.0006 (7)0.0033 (7)0.0002 (7)
Cu1—O11.9937 (14)C3—C21.397 (3)
Cu1—O1i1.9937 (14)C4—C31.394 (3)
Cu1—O42.5078 (16)C4—C51.387 (3)
Cu1—O4i2.5078 (16)C4—H40.9300
Cu1—N11.9984 (16)C5—C61.388 (3)
Cu1—N1i1.9984 (16)C5—H50.9300
I1—C32.0942 (19)C6—H60.9300
O1—C11.275 (2)C7—C61.389 (3)
O2—C11.245 (2)C7—H70.9300
O3—C131.238 (3)C8—H80.9300
O4—H410.87 (4)C9—C81.390 (2)
O4—H420.80 (4)C9—C101.391 (3)
N1—C81.337 (2)C9—C131.496 (3)
N1—C121.343 (3)C10—C111.390 (3)
N2—C131.331 (3)C10—H100.9300
N2—H220.83 (3)C11—H110.9300
N2—H210.84 (3)C12—C111.387 (3)
C1—C21.513 (3)C12—H120.9300
C2—C71.403 (3)
O1i—Cu1—O1180.00 (7)C4—C5—C6119.99 (19)
O1—Cu1—N189.98 (6)C4—C5—H5120.0
O1i—Cu1—N190.02 (6)C6—C5—H5120.0
O1—Cu1—N1i90.02 (6)C5—C6—C7119.8 (2)
O1i—Cu1—N1i89.98 (6)C5—C6—H6120.1
O4—Cu1—O184.56 (6)C7—C6—H6120.1
O4—Cu1—N193.70 (6)C2—C7—H7119.3
N1—Cu1—N1i180.00 (9)C6—C7—C2121.42 (19)
H41—O4—H42106 (4)C6—C7—H7119.3
C1—O1—Cu1121.16 (13)N1—C8—C9122.62 (18)
C8—N1—Cu1120.11 (13)N1—C8—H8118.7
C12—N1—Cu1121.13 (13)C9—C8—H8118.7
C8—N1—C12118.74 (16)C8—C9—C10118.26 (18)
C13—N2—H21116 (2)C8—C9—C13117.39 (17)
C13—N2—H22122 (2)C10—C9—C13124.23 (17)
H22—N2—H21120 (3)C9—C10—H10120.3
O1—C1—C2116.35 (17)C11—C10—C9119.46 (18)
O2—C1—O1125.16 (18)C11—C10—H10120.3
O2—C1—C2118.39 (17)C10—C11—H11120.8
C3—C2—C1123.79 (18)C12—C11—C10118.33 (19)
C3—C2—C7117.57 (18)C12—C11—H11120.8
C7—C2—C1118.51 (17)N1—C12—C11122.56 (19)
C2—C3—I1123.71 (14)N1—C12—H12118.7
C4—C3—I1114.92 (15)C11—C12—H12118.7
C4—C3—C2121.30 (18)O3—C13—N2122.34 (19)
C3—C4—H4120.1O3—C13—C9120.19 (17)
C5—C4—C3119.83 (19)N2—C13—C9117.45 (18)
C5—C4—H4120.1
N1—Cu1—O1—C1123.90 (15)I1—C3—C2—C7173.86 (14)
N1i—Cu1—O1—C1−56.10 (15)C4—C3—C2—C1172.78 (18)
O1—Cu1—N1—C8−133.41 (15)C4—C3—C2—C7−3.0 (3)
O1i—Cu1—N1—C846.59 (15)C5—C4—C3—I1−176.15 (16)
O1—Cu1—N1—C1248.21 (16)C5—C4—C3—C21.0 (3)
O1i—Cu1—N1—C12−131.79 (16)C3—C4—C5—C61.5 (3)
Cu1—O1—C1—O2−20.6 (3)C4—C5—C6—C7−1.8 (3)
Cu1—O1—C1—C2155.73 (13)C2—C7—C6—C5−0.4 (3)
Cu1—N1—C8—C9−178.46 (15)C10—C9—C8—N1−1.5 (3)
C12—N1—C8—C90.0 (3)C13—C9—C8—N1174.79 (18)
Cu1—N1—C12—C11179.89 (16)C8—C9—C10—C111.6 (3)
C8—N1—C12—C111.5 (3)C13—C9—C10—C11−174.41 (19)
O1—C1—C2—C3153.14 (18)C8—C9—C13—O3−4.3 (3)
O1—C1—C2—C7−31.1 (3)C8—C9—C13—N2177.18 (19)
O2—C1—C2—C3−30.3 (3)C10—C9—C13—O3171.8 (2)
O2—C1—C2—C7145.49 (19)C10—C9—C13—N2−6.8 (3)
C1—C2—C7—C6−173.32 (18)C9—C10—C11—C12−0.3 (3)
C3—C2—C7—C62.7 (3)N1—C12—C11—C10−1.3 (3)
I1—C3—C2—C1−10.3 (3)
D—H···AD—HH···AD···AD—H···A
N2—H21···O3ii0.84 (3)2.17 (3)2.942 (3)154 (3)
N2—H22···O2iii0.83 (3)2.11 (3)2.881 (2)154 (3)
O4—H41···O2i0.87 (4)1.87 (4)2.720 (2)165 (4)
O4—H42···O3iv0.80 (4)2.16 (4)2.923 (2)160 (4)
C10—H10···O2iii0.932.493.368 (2)158
Table 1

Selected bond lengths (Å)

Cu1—O11.9937 (14)
Cu1—O42.5078 (16)
Cu1—N11.9984 (16)
Table 2

Hydrogen-bond geometry (Å, °)

D—H⋯A D—HH⋯A DA D—H⋯A
N2—H21⋯O3i 0.84 (3)2.17 (3)2.942 (3)154 (3)
N2—H22⋯O2ii 0.83 (3)2.11 (3)2.881 (2)154 (3)
O4—H41⋯O2iii 0.87 (4)1.87 (4)2.720 (2)165 (4)
O4—H42⋯O3iv 0.80 (4)2.16 (4)2.923 (2)160 (4)
C10—H10⋯O2ii 0.932.493.368 (2)158

Symmetry codes: (i) ; (ii) ; (iii) ; (iv) .

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