Literature DB >> 23633998

trans-Tetra-aqua-bis-(isonicotinamide-κN (1))zinc bis-(3-hy-droxy-benzoate) tetra-hydrate.

Ibrahim Göker Zaman1, Nagihan Caylak Delibaş, Hacali Necefoğlu, Tuncer Hökelek.   

Abstract

The asymmetric unit of the title compound, [Zn(C6H6N2O)2(H2O)4](C7H5O3)2·4H2O, contains half of the complex cation with the Zn(II) ion located on an inversion center, a 3-hy-droxy-benzoate counter-anion and two uncoordinating water mol-ecules. Four water O atoms in the equatorial plane around the Zn(II) ion [Zn-O = 2.089 (2) and 2.128 (2) Å] form a slightly distorted square-planar arrangement and the distorted octa-hedral geometry is completed by the two N atoms [Zn-N = 2.117 (2) Å] from two isonicotinamide ligands. In the anion, the carboxyl-ate group is twisted from the attached benzene ring at 9.0 (2)°. In the crystal, a three-dimensional hydrogen-bonding network, formed by classical O-H⋯O and N-H⋯O and weak C-H⋯O hydrogen bonds, consolidates the crystal packing, which exhibits π-π stacking between the benzene and pyridine rings, with centroid-centroid distances of 3.458 (2) and 3.609 (2) Å. One of the two H atoms of each uncoordinating water mol-ecule is disordered over two orientations with an occupancy ratio of 0.60:0.40.

Entities:  

Year:  2013        PMID: 23633998      PMCID: PMC3629480          DOI: 10.1107/S1600536813006466

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For related structures, see: Hökelek et al. (2009a ▶,b ▶,c ▶,d ▶,e ▶); Sertçelik et al. (2009 ▶). For isostructural Ni and Co complexes, see: Zaman et al. (2012 ▶).

Experimental

Crystal data

[Zn(C6H6N2O)2(H2O)4](C7H5O3)2·4H2O M = 727.99 Monoclinic, a = 6.7002 (2) Å b = 17.0005 (4) Å c = 13.6000 (3) Å β = 99.993 (3)° V = 1525.63 (7) Å3 Z = 2 Mo Kα radiation μ = 0.89 mm−1 T = 100 K 0.38 × 0.38 × 0.32 mm

Data collection

Bruker Kappa APEXII CCD area-detector diffractometer Absorption correction: multi-scan (SADABS; Bruker, 2005 ▶) T min = 0.720, T max = 0.752 14180 measured reflections 3808 independent reflections 3497 reflections with I > 2σ(I) R int = 0.033

Refinement

R[F 2 > 2σ(F 2)] = 0.047 wR(F 2) = 0.114 S = 1.27 3808 reflections 264 parameters H atoms treated by a mixture of independent and constrained refinement Δρmax = 1.41 e Å−3 Δρmin = −0.47 e Å−3 Data collection: APEX2 (Bruker, 2007 ▶); cell refinement: SAINT (Bruker, 2007 ▶); data reduction: SAINT; program(s) used to solve structure: SHELXS97 (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: ORTEP-3 for Windows (Farrugia, 2012 ▶); software used to prepare material for publication: WinGX (Farrugia, 2012 ▶) and PLATON (Spek, 2009 ▶). Click here for additional data file. Crystal structure: contains datablock(s) I, global. DOI: 10.1107/S1600536813006466/xu5683sup1.cif Click here for additional data file. Structure factors: contains datablock(s) I. DOI: 10.1107/S1600536813006466/xu5683Isup2.hkl Additional supplementary materials: crystallographic information; 3D view; checkCIF report
[Zn(C6H6N2O)2(H2O)4](C7H5O3)2·4H2OF(000) = 760
Mr = 727.99Dx = 1.585 Mg m3
Monoclinic, P21/nMo Kα radiation, λ = 0.71073 Å
Hall symbol: -P 2ynCell parameters from 7045 reflections
a = 6.7002 (2) Åθ = 2.4–28.4°
b = 17.0005 (4) ŵ = 0.89 mm1
c = 13.6000 (3) ÅT = 100 K
β = 99.993 (3)°Block, colorless
V = 1525.63 (7) Å30.38 × 0.38 × 0.32 mm
Z = 2
Bruker Kappa APEXII CCD area-detector diffractometer3808 independent reflections
Radiation source: fine-focus sealed tube3497 reflections with I > 2σ(I)
Graphite monochromatorRint = 0.033
φ and ω scansθmax = 28.5°, θmin = 2.4°
Absorption correction: multi-scan (SADABS; Bruker, 2005)h = −8→8
Tmin = 0.720, Tmax = 0.752k = −22→22
14180 measured reflectionsl = −18→18
Refinement on F2Primary atom site location: structure-invariant direct methods
Least-squares matrix: fullSecondary atom site location: difference Fourier map
R[F2 > 2σ(F2)] = 0.047Hydrogen site location: inferred from neighbouring sites
wR(F2) = 0.114H atoms treated by a mixture of independent and constrained refinement
S = 1.27w = 1/[σ2(Fo2) + (0.0244P)2 + 3.4855P] where P = (Fo2 + 2Fc2)/3
3808 reflections(Δ/σ)max < 0.001
264 parametersΔρmax = 1.41 e Å3
0 restraintsΔρmin = −0.47 e Å3
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/UeqOcc. (<1)
Zn10.50000.00000.50000.00963 (12)
O10.1790 (3)0.11717 (11)0.83803 (14)0.0153 (4)
O20.0781 (3)0.04165 (11)0.70518 (14)0.0141 (4)
O30.0140 (3)0.39187 (11)0.71927 (15)0.0172 (4)
H3A0.004 (7)0.428 (3)0.678 (4)0.051 (14)*
O40.6024 (3)0.33081 (11)0.81904 (14)0.0168 (4)
O50.6799 (3)0.04833 (12)0.40047 (15)0.0144 (4)
H510.763 (7)0.017 (3)0.381 (3)0.041 (12)*
H520.636 (6)0.070 (2)0.353 (3)0.028 (11)*
O60.2262 (3)0.03391 (12)0.41227 (15)0.0166 (4)
H610.140 (8)0.002 (3)0.385 (4)0.052 (14)*
H620.192 (6)0.073 (3)0.386 (3)0.037 (12)*
O7−0.0930 (4)0.06755 (13)0.95598 (17)0.0201 (4)
H71−0.009 (7)0.084 (3)0.920 (3)0.040 (12)*
H72A−0.201 (14)0.059 (5)0.930 (6)0.05 (2)*0.60
H72B−0.05 (2)0.026 (8)0.967 (9)0.059*0.40
O80.5012 (4)0.01950 (12)0.90057 (16)0.0171 (4)
H810.398 (7)0.052 (3)0.882 (3)0.045 (13)*
H82A0.596 (12)0.037 (4)0.910 (5)0.03 (2)*0.60
H82B0.497 (16)0.008 (6)0.959 (7)0.030*0.40
N10.5135 (3)0.10959 (12)0.57473 (16)0.0104 (4)
N20.4845 (4)0.39638 (14)0.67657 (18)0.0148 (5)
H210.440 (6)0.395 (2)0.616 (3)0.037 (11)*
H220.474 (5)0.438 (2)0.705 (3)0.019 (9)*
C10.1097 (4)0.10822 (15)0.74642 (19)0.0111 (5)
C20.0586 (4)0.18077 (15)0.68340 (19)0.0109 (5)
C30.0647 (4)0.25421 (15)0.72947 (19)0.0117 (5)
H30.10210.25840.79840.014*
C40.0147 (4)0.32091 (15)0.67183 (19)0.0124 (5)
C5−0.0367 (4)0.31508 (15)0.5682 (2)0.0144 (5)
H5−0.06880.36000.52980.017*
C6−0.0395 (4)0.24190 (16)0.5227 (2)0.0149 (5)
H6−0.07230.23800.45360.018*
C70.0063 (4)0.17457 (15)0.57989 (19)0.0132 (5)
H70.00220.12550.54930.016*
C80.5621 (4)0.11492 (15)0.67488 (19)0.0120 (5)
H80.58910.06890.71180.014*
C90.5736 (4)0.18572 (15)0.72495 (19)0.0120 (5)
H90.60910.18710.79410.014*
C100.5317 (4)0.25512 (14)0.67106 (19)0.0101 (5)
C110.4793 (4)0.24979 (15)0.56786 (19)0.0122 (5)
H110.44910.29480.52930.015*
C120.4728 (4)0.17650 (15)0.52330 (19)0.0127 (5)
H120.43850.17360.45410.015*
C130.5426 (4)0.33143 (15)0.72775 (19)0.0118 (5)
U11U22U33U12U13U23
Zn10.0128 (2)0.00708 (19)0.00863 (19)0.00011 (15)0.00070 (14)−0.00048 (15)
O10.0184 (10)0.0151 (9)0.0118 (9)0.0005 (7)0.0012 (7)0.0016 (7)
O20.0166 (9)0.0098 (8)0.0150 (9)−0.0010 (7)0.0003 (7)−0.0002 (7)
O30.0250 (11)0.0099 (9)0.0162 (9)0.0003 (8)0.0025 (8)−0.0012 (7)
O40.0261 (11)0.0121 (9)0.0112 (9)−0.0017 (8)0.0006 (8)−0.0013 (7)
O50.0175 (10)0.0138 (9)0.0125 (9)0.0015 (8)0.0048 (8)0.0016 (7)
O60.0172 (10)0.0104 (9)0.0187 (10)0.0010 (8)−0.0061 (8)0.0019 (8)
O70.0234 (12)0.0196 (10)0.0189 (10)−0.0029 (9)0.0078 (9)−0.0003 (8)
O80.0185 (11)0.0133 (9)0.0183 (10)0.0019 (8)0.0000 (8)−0.0001 (8)
N10.0094 (10)0.0106 (10)0.0110 (10)−0.0018 (8)0.0010 (8)−0.0011 (8)
N20.0215 (12)0.0100 (10)0.0124 (11)0.0012 (9)0.0015 (9)−0.0027 (8)
C10.0079 (11)0.0122 (11)0.0135 (12)−0.0005 (9)0.0028 (9)0.0007 (9)
C20.0106 (11)0.0105 (11)0.0117 (11)0.0000 (9)0.0023 (9)0.0023 (9)
C30.0095 (11)0.0142 (12)0.0107 (11)−0.0013 (9)0.0001 (9)−0.0001 (9)
C40.0114 (11)0.0098 (11)0.0158 (12)−0.0014 (9)0.0016 (9)−0.0018 (9)
C50.0150 (12)0.0123 (12)0.0152 (12)−0.0013 (10)0.0008 (10)0.0038 (9)
C60.0162 (13)0.0169 (13)0.0110 (12)−0.0017 (10)0.0008 (9)0.0004 (9)
C70.0144 (12)0.0124 (11)0.0130 (12)−0.0016 (9)0.0030 (9)−0.0012 (9)
C80.0131 (12)0.0101 (11)0.0129 (12)0.0004 (9)0.0025 (9)0.0014 (9)
C90.0127 (12)0.0130 (12)0.0102 (11)0.0005 (9)0.0015 (9)−0.0002 (9)
C100.0081 (11)0.0103 (11)0.0122 (11)−0.0006 (9)0.0021 (9)−0.0021 (9)
C110.0141 (12)0.0095 (11)0.0126 (12)0.0014 (9)0.0010 (9)0.0009 (9)
C130.0117 (12)0.0110 (11)0.0131 (12)−0.0018 (9)0.0034 (9)−0.0020 (9)
C120.0149 (12)0.0125 (12)0.0105 (11)−0.0008 (9)0.0020 (9)−0.0009 (9)
Zn1—O52.1276 (19)N2—C131.327 (3)
Zn1—O5i2.1276 (19)N2—H210.83 (4)
Zn1—O62.089 (2)N2—H220.81 (4)
Zn1—O6i2.089 (2)C2—C11.507 (3)
Zn1—N12.117 (2)C2—C31.394 (3)
Zn1—N1i2.117 (2)C2—C71.394 (3)
O1—C11.261 (3)C3—H30.9300
O2—C11.264 (3)C4—C31.386 (4)
O3—C41.369 (3)C5—C41.395 (4)
O3—H3A0.83 (5)C5—C61.388 (4)
O4—C131.237 (3)C5—H50.9300
O5—H510.85 (5)C6—H60.9300
O5—H520.76 (4)C7—C61.388 (4)
O6—H610.83 (5)C7—H70.9300
O6—H620.77 (5)C8—C91.379 (3)
O7—H710.85 (5)C8—H80.9300
O7—H72A0.76 (9)C9—C101.392 (3)
O7—H72B0.78 (13)C9—H90.9300
O8—H810.88 (5)C10—C111.389 (3)
O8—H82A0.69 (8)C10—C131.504 (3)
O8—H82B0.82 (9)C11—C121.383 (3)
N1—C81.347 (3)C11—H110.9300
N1—C121.338 (3)C12—H120.9300
O5—Zn1—O5i180.0C3—C2—C1119.4 (2)
O6—Zn1—O593.93 (8)C3—C2—C7120.3 (2)
O6i—Zn1—O586.07 (8)C7—C2—C1120.3 (2)
O6—Zn1—O5i86.07 (8)C2—C3—H3120.2
O6i—Zn1—O5i93.93 (8)C4—C3—C2119.5 (2)
O6—Zn1—O6i180.00 (10)C4—C3—H3120.2
O6—Zn1—N189.51 (8)O3—C4—C3118.4 (2)
O6i—Zn1—N190.49 (8)O3—C4—C5121.2 (2)
O6—Zn1—N1i90.49 (8)C3—C4—C5120.4 (2)
O6i—Zn1—N1i89.51 (8)C4—C5—H5120.1
N1—Zn1—O589.07 (8)C6—C5—C4119.7 (2)
N1i—Zn1—O590.93 (8)C6—C5—H5120.1
N1—Zn1—O5i90.93 (8)C5—C6—H6119.8
N1i—Zn1—O5i89.07 (8)C7—C6—C5120.3 (2)
N1—Zn1—N1i180.00 (5)C7—C6—H6119.8
C4—O3—H3A110 (3)C2—C7—H7120.1
Zn1—O5—H51116 (3)C6—C7—C2119.7 (2)
Zn1—O5—H52123 (3)C6—C7—H7120.1
H52—O5—H51102 (4)N1—C8—C9122.7 (2)
Zn1—O6—H61123 (3)N1—C8—H8118.6
Zn1—O6—H62131 (3)C9—C8—H8118.6
H61—O6—H62103 (4)C8—C9—C10119.4 (2)
H71—O7—H72B96 (10)C8—C9—H9120.3
H72A—O7—H71118 (7)C10—C9—H9120.3
H72A—O7—H72B104 (10)C9—C10—C13118.3 (2)
H81—O8—H82A116 (6)C11—C10—C9118.0 (2)
H81—O8—H82B106 (8)C11—C10—C13123.7 (2)
H82A—O8—H82B96 (9)C10—C11—H11120.5
C8—N1—Zn1121.81 (17)C12—C11—C10119.0 (2)
C12—N1—Zn1120.62 (17)C12—C11—H11120.5
C12—N1—C8117.6 (2)N1—C12—C11123.3 (2)
C13—N2—H21122 (3)N1—C12—H12118.4
C13—N2—H22121 (2)C11—C12—H12118.4
H22—N2—H21117 (4)O4—C13—N2123.2 (2)
O1—C1—O2123.4 (2)O4—C13—C10119.1 (2)
O1—C1—C2118.1 (2)N2—C13—C10117.7 (2)
O2—C1—C2118.4 (2)
O5—Zn1—N1—C8−131.4 (2)C1—C2—C7—C6−179.7 (2)
O5i—Zn1—N1—C848.6 (2)C3—C2—C7—C60.1 (4)
O5—Zn1—N1—C1248.9 (2)O3—C4—C3—C2177.4 (2)
O5i—Zn1—N1—C12−131.1 (2)C5—C4—C3—C2−1.6 (4)
O6—Zn1—N1—C8134.7 (2)C6—C5—C4—O3−178.3 (2)
O6i—Zn1—N1—C8−45.3 (2)C6—C5—C4—C30.6 (4)
O6—Zn1—N1—C12−45.1 (2)C4—C5—C6—C70.7 (4)
O6i—Zn1—N1—C12134.9 (2)C2—C7—C6—C5−1.0 (4)
Zn1—N1—C8—C9179.39 (19)N1—C8—C9—C100.7 (4)
C12—N1—C8—C9−0.8 (4)C8—C9—C10—C110.1 (4)
Zn1—N1—C12—C11−179.9 (2)C8—C9—C10—C13179.2 (2)
C8—N1—C12—C110.3 (4)C9—C10—C11—C12−0.6 (4)
C3—C2—C1—O1−8.0 (4)C13—C10—C11—C12−179.6 (2)
C3—C2—C1—O2170.9 (2)C9—C10—C13—O45.2 (4)
C7—C2—C1—O1171.8 (2)C9—C10—C13—N2−174.0 (2)
C7—C2—C1—O2−9.3 (4)C11—C10—C13—O4−175.7 (2)
C1—C2—C3—C4−179.0 (2)C11—C10—C13—N25.1 (4)
C7—C2—C3—C41.2 (4)C10—C11—C12—N10.4 (4)
D—H···AD—HH···AD···AD—H···A
O3—H3A···O8ii0.83 (5)1.88 (5)2.705 (3)172 (5)
N2—H21···O7iii0.83 (4)2.24 (4)3.017 (3)157 (3)
N2—H22···O2ii0.82 (4)2.21 (4)3.016 (3)172 (3)
O5—H51···O2i0.85 (5)1.98 (5)2.800 (3)162 (4)
O5—H52···O3iii0.76 (4)1.97 (4)2.719 (3)170 (4)
O6—H61···O2iv0.83 (5)1.89 (5)2.689 (3)161 (5)
O6—H62···O4v0.77 (5)1.92 (5)2.687 (3)179 (5)
O7—H71···O10.85 (5)1.91 (5)2.761 (3)178 (3)
O7—H72A···O8vi0.76 (9)2.08 (9)2.814 (4)163 (8)
O7—H72B···O7vii0.78 (9)2.03 (9)2.783 (3)160 (8)
O8—H81···O10.89 (5)1.85 (5)2.739 (3)177 (4)
O8—H82A···O7viii0.69 (8)2.13 (8)2.814 (4)167 (6)
O8—H82B···O8ix0.82 (9)1.96 (9)2.787 (3)178 (6)
C11—H11···O7iii0.932.543.455 (3)168
Table 1

Hydrogen-bond geometry (Å, °)

D—H⋯A D—HH⋯A DA D—H⋯A
O3—H3A⋯O8i 0.83 (5)1.88 (5)2.705 (3)172 (5)
N2—H21⋯O7ii 0.83 (4)2.24 (4)3.017 (3)157 (3)
N2—H22⋯O2i 0.82 (4)2.21 (4)3.016 (3)172 (3)
O5—H51⋯O2iii 0.85 (5)1.98 (5)2.800 (3)162 (4)
O5—H52⋯O3ii 0.76 (4)1.97 (4)2.719 (3)170 (4)
O6—H61⋯O2iv 0.83 (5)1.89 (5)2.689 (3)161 (5)
O6—H62⋯O4v 0.77 (5)1.92 (5)2.687 (3)179 (5)
O7—H71⋯O10.85 (5)1.91 (5)2.761 (3)178 (3)
O7—H72A⋯O8vi 0.76 (9)2.08 (9)2.814 (4)163 (8)
O7—H72B⋯O7vii 0.78 (9)2.03 (9)2.783 (3)160 (8)
O8—H81⋯O10.89 (5)1.85 (5)2.739 (3)177 (4)
O8—H82A⋯O7viii 0.69 (8)2.13 (8)2.814 (4)167 (6)
O8—H82B⋯O8ix 0.82 (9)1.96 (9)2.787 (3)178 (6)
C11—H11⋯O7ii 0.932.543.455 (3)168

Symmetry codes: (i) ; (ii) ; (iii) ; (iv) ; (v) ; (vi) ; (vii) ; (viii) ; (ix) .

  11 in total

1.  A short history of SHELX.

Authors:  George M Sheldrick
Journal:  Acta Crystallogr A       Date:  2007-12-21       Impact factor: 2.290

2.  Tetra-aqua-bis(nicotinamide-κN)nickel(II) bis-(2-fluoro-benzoate).

Authors:  Tuncer Hökelek; Hakan Dal; Barış Tercan; F Elif Ozbek; Hacali Necefoğlu
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2009-10-10

3.  Diaqua-bis(N,N-diethyl-nicotinamide-κN)bis-(4-formyl-benzoato-κO)cobalt(II).

Authors:  Mustafa Sertçelik; Barış Tercan; Ertan Sahin; Hacali Necefoğlu; Tuncer Hökelek
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2009-03-11

4.  Diaqua-bis[4-(dimethyl-amino)-benzoato]-κO,O';κO-(isonicotinamide-κN)cobalt(II).

Authors:  Tuncer Hökelek; Hakan Dal; Barış Tercan; Ozgür Aybirdi; Hacali Necefoğlu
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2009-05-14

5.  Tetra-aqua-bis(isonicotinamide-κN)nickel(II) bis-(4-formyl-benzoate) dihydrate.

Authors:  Tuncer Hökelek; Filiz Yılmaz; Barış Tercan; Ferdi Gürgen; Hacali Necefoğlu
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2009-08-19

6.  Diaqua-bis(N,N-diethyl-nicotinamide-κN)bis-(4-formyl-benzoato-κO)nickel(II).

Authors:  Mustafa Sertçelik; Barış Tercan; Ertan Sahin; Hacali Necefoğlu; Tuncer Hökelek
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2009-02-25

7.  Diaqua-bis(2-bromo-benzoato-κO)bis-(nicotinamide-κN)nickel(II).

Authors:  Tuncer Hökelek; Filiz Yılmaz; Barış Tercan; F Elif Ozbek; Hacali Necefoğlu
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2009-06-13

8.  trans-Tetra-aqua-bis-(isonicotinamide-κN)cobalt(II) bis-(3-hy-droxy-benzoate) tetra-hydrate.

Authors:  Iibrahim Göker Zaman; Nagihan Caylak Delibaş; Hacali Necefoğlu; Tuncer Hökelek
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2012-02-04

9.  trans-Tetra-aqua-bis-(isonicotinamide-κN)nickel(II) bis-(3-hy-droxy-benzoate) tetra-hydrate.

Authors:  Ibrahim Göker Zaman; Nagihan Caylak Delibaş; Hacali Necefoğlu; Tuncer Hökelek
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2012-01-21

10.  Structure validation in chemical crystallography.

Authors:  Anthony L Spek
Journal:  Acta Crystallogr D Biol Crystallogr       Date:  2009-01-20
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1.  Crystal structure of bis-(tri-ethano-lamine-κ(3) N,O,O')nickel(II) bis-(3-hy-droxy-benzoate) tetra-hydrate.

Authors:  Aziz B Ibragimov
Journal:  Acta Crystallogr E Crystallogr Commun       Date:  2016-04-08
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