| Literature DB >> 23633998 |
Ibrahim Göker Zaman1, Nagihan Caylak Delibaş, Hacali Necefoğlu, Tuncer Hökelek.
Abstract
The asymmetric unit of the title compound, [Zn(C6H6N2O)2(H2O)4](C7H5O3)2·4H2O, contains half of the complex cation with the Zn(II) ion located on an inversion center, a 3-hy-droxy-benzoate counter-anion and two uncoordinating water mol-ecules. Four water O atoms in the equatorial plane around the Zn(II) ion [Zn-O = 2.089 (2) and 2.128 (2) Å] form a slightly distorted square-planar arrangement and the distorted octa-hedral geometry is completed by the two N atoms [Zn-N = 2.117 (2) Å] from two isonicotinamide ligands. In the anion, the carboxyl-ate group is twisted from the attached benzene ring at 9.0 (2)°. In the crystal, a three-dimensional hydrogen-bonding network, formed by classical O-H⋯O and N-H⋯O and weak C-H⋯O hydrogen bonds, consolidates the crystal packing, which exhibits π-π stacking between the benzene and pyridine rings, with centroid-centroid distances of 3.458 (2) and 3.609 (2) Å. One of the two H atoms of each uncoordinating water mol-ecule is disordered over two orientations with an occupancy ratio of 0.60:0.40.Entities:
Year: 2013 PMID: 23633998 PMCID: PMC3629480 DOI: 10.1107/S1600536813006466
Source DB: PubMed Journal: Acta Crystallogr Sect E Struct Rep Online ISSN: 1600-5368
| [Zn(C6H6N2O)2(H2O)4](C7H5O3)2·4H2O | |
| Monoclinic, | Mo |
| Hall symbol: -P 2yn | Cell parameters from 7045 reflections |
| θ = 2.4–28.4° | |
| µ = 0.89 mm−1 | |
| β = 99.993 (3)° | Block, colorless |
| 0.38 × 0.38 × 0.32 mm | |
| Bruker Kappa APEXII CCD area-detector diffractometer | 3808 independent reflections |
| Radiation source: fine-focus sealed tube | 3497 reflections with |
| Graphite monochromator | |
| φ and ω scans | θmax = 28.5°, θmin = 2.4° |
| Absorption correction: multi-scan ( | |
| 14180 measured reflections |
| Refinement on | Primary atom site location: structure-invariant direct methods |
| Least-squares matrix: full | Secondary atom site location: difference Fourier map |
| Hydrogen site location: inferred from neighbouring sites | |
| H atoms treated by a mixture of independent and constrained refinement | |
| 3808 reflections | (Δ/σ)max < 0.001 |
| 264 parameters | Δρmax = 1.41 e Å−3 |
| 0 restraints | Δρmin = −0.47 e Å−3 |
| Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes. |
| Refinement. Refinement of |
| Occ. (<1) | |||||
| Zn1 | 0.5000 | 0.0000 | 0.5000 | 0.00963 (12) | |
| O1 | 0.1790 (3) | 0.11717 (11) | 0.83803 (14) | 0.0153 (4) | |
| O2 | 0.0781 (3) | 0.04165 (11) | 0.70518 (14) | 0.0141 (4) | |
| O3 | 0.0140 (3) | 0.39187 (11) | 0.71927 (15) | 0.0172 (4) | |
| H3A | 0.004 (7) | 0.428 (3) | 0.678 (4) | 0.051 (14)* | |
| O4 | 0.6024 (3) | 0.33081 (11) | 0.81904 (14) | 0.0168 (4) | |
| O5 | 0.6799 (3) | 0.04833 (12) | 0.40047 (15) | 0.0144 (4) | |
| H51 | 0.763 (7) | 0.017 (3) | 0.381 (3) | 0.041 (12)* | |
| H52 | 0.636 (6) | 0.070 (2) | 0.353 (3) | 0.028 (11)* | |
| O6 | 0.2262 (3) | 0.03391 (12) | 0.41227 (15) | 0.0166 (4) | |
| H61 | 0.140 (8) | 0.002 (3) | 0.385 (4) | 0.052 (14)* | |
| H62 | 0.192 (6) | 0.073 (3) | 0.386 (3) | 0.037 (12)* | |
| O7 | −0.0930 (4) | 0.06755 (13) | 0.95598 (17) | 0.0201 (4) | |
| H71 | −0.009 (7) | 0.084 (3) | 0.920 (3) | 0.040 (12)* | |
| H72A | −0.201 (14) | 0.059 (5) | 0.930 (6) | 0.05 (2)* | 0.60 |
| H72B | −0.05 (2) | 0.026 (8) | 0.967 (9) | 0.059* | 0.40 |
| O8 | 0.5012 (4) | 0.01950 (12) | 0.90057 (16) | 0.0171 (4) | |
| H81 | 0.398 (7) | 0.052 (3) | 0.882 (3) | 0.045 (13)* | |
| H82A | 0.596 (12) | 0.037 (4) | 0.910 (5) | 0.03 (2)* | 0.60 |
| H82B | 0.497 (16) | 0.008 (6) | 0.959 (7) | 0.030* | 0.40 |
| N1 | 0.5135 (3) | 0.10959 (12) | 0.57473 (16) | 0.0104 (4) | |
| N2 | 0.4845 (4) | 0.39638 (14) | 0.67657 (18) | 0.0148 (5) | |
| H21 | 0.440 (6) | 0.395 (2) | 0.616 (3) | 0.037 (11)* | |
| H22 | 0.474 (5) | 0.438 (2) | 0.705 (3) | 0.019 (9)* | |
| C1 | 0.1097 (4) | 0.10822 (15) | 0.74642 (19) | 0.0111 (5) | |
| C2 | 0.0586 (4) | 0.18077 (15) | 0.68340 (19) | 0.0109 (5) | |
| C3 | 0.0647 (4) | 0.25421 (15) | 0.72947 (19) | 0.0117 (5) | |
| H3 | 0.1021 | 0.2584 | 0.7984 | 0.014* | |
| C4 | 0.0147 (4) | 0.32091 (15) | 0.67183 (19) | 0.0124 (5) | |
| C5 | −0.0367 (4) | 0.31508 (15) | 0.5682 (2) | 0.0144 (5) | |
| H5 | −0.0688 | 0.3600 | 0.5298 | 0.017* | |
| C6 | −0.0395 (4) | 0.24190 (16) | 0.5227 (2) | 0.0149 (5) | |
| H6 | −0.0723 | 0.2380 | 0.4536 | 0.018* | |
| C7 | 0.0063 (4) | 0.17457 (15) | 0.57989 (19) | 0.0132 (5) | |
| H7 | 0.0022 | 0.1255 | 0.5493 | 0.016* | |
| C8 | 0.5621 (4) | 0.11492 (15) | 0.67488 (19) | 0.0120 (5) | |
| H8 | 0.5891 | 0.0689 | 0.7118 | 0.014* | |
| C9 | 0.5736 (4) | 0.18572 (15) | 0.72495 (19) | 0.0120 (5) | |
| H9 | 0.6091 | 0.1871 | 0.7941 | 0.014* | |
| C10 | 0.5317 (4) | 0.25512 (14) | 0.67106 (19) | 0.0101 (5) | |
| C11 | 0.4793 (4) | 0.24979 (15) | 0.56786 (19) | 0.0122 (5) | |
| H11 | 0.4491 | 0.2948 | 0.5293 | 0.015* | |
| C12 | 0.4728 (4) | 0.17650 (15) | 0.52330 (19) | 0.0127 (5) | |
| H12 | 0.4385 | 0.1736 | 0.4541 | 0.015* | |
| C13 | 0.5426 (4) | 0.33143 (15) | 0.72775 (19) | 0.0118 (5) |
| Zn1 | 0.0128 (2) | 0.00708 (19) | 0.00863 (19) | 0.00011 (15) | 0.00070 (14) | −0.00048 (15) |
| O1 | 0.0184 (10) | 0.0151 (9) | 0.0118 (9) | 0.0005 (7) | 0.0012 (7) | 0.0016 (7) |
| O2 | 0.0166 (9) | 0.0098 (8) | 0.0150 (9) | −0.0010 (7) | 0.0003 (7) | −0.0002 (7) |
| O3 | 0.0250 (11) | 0.0099 (9) | 0.0162 (9) | 0.0003 (8) | 0.0025 (8) | −0.0012 (7) |
| O4 | 0.0261 (11) | 0.0121 (9) | 0.0112 (9) | −0.0017 (8) | 0.0006 (8) | −0.0013 (7) |
| O5 | 0.0175 (10) | 0.0138 (9) | 0.0125 (9) | 0.0015 (8) | 0.0048 (8) | 0.0016 (7) |
| O6 | 0.0172 (10) | 0.0104 (9) | 0.0187 (10) | 0.0010 (8) | −0.0061 (8) | 0.0019 (8) |
| O7 | 0.0234 (12) | 0.0196 (10) | 0.0189 (10) | −0.0029 (9) | 0.0078 (9) | −0.0003 (8) |
| O8 | 0.0185 (11) | 0.0133 (9) | 0.0183 (10) | 0.0019 (8) | 0.0000 (8) | −0.0001 (8) |
| N1 | 0.0094 (10) | 0.0106 (10) | 0.0110 (10) | −0.0018 (8) | 0.0010 (8) | −0.0011 (8) |
| N2 | 0.0215 (12) | 0.0100 (10) | 0.0124 (11) | 0.0012 (9) | 0.0015 (9) | −0.0027 (8) |
| C1 | 0.0079 (11) | 0.0122 (11) | 0.0135 (12) | −0.0005 (9) | 0.0028 (9) | 0.0007 (9) |
| C2 | 0.0106 (11) | 0.0105 (11) | 0.0117 (11) | 0.0000 (9) | 0.0023 (9) | 0.0023 (9) |
| C3 | 0.0095 (11) | 0.0142 (12) | 0.0107 (11) | −0.0013 (9) | 0.0001 (9) | −0.0001 (9) |
| C4 | 0.0114 (11) | 0.0098 (11) | 0.0158 (12) | −0.0014 (9) | 0.0016 (9) | −0.0018 (9) |
| C5 | 0.0150 (12) | 0.0123 (12) | 0.0152 (12) | −0.0013 (10) | 0.0008 (10) | 0.0038 (9) |
| C6 | 0.0162 (13) | 0.0169 (13) | 0.0110 (12) | −0.0017 (10) | 0.0008 (9) | 0.0004 (9) |
| C7 | 0.0144 (12) | 0.0124 (11) | 0.0130 (12) | −0.0016 (9) | 0.0030 (9) | −0.0012 (9) |
| C8 | 0.0131 (12) | 0.0101 (11) | 0.0129 (12) | 0.0004 (9) | 0.0025 (9) | 0.0014 (9) |
| C9 | 0.0127 (12) | 0.0130 (12) | 0.0102 (11) | 0.0005 (9) | 0.0015 (9) | −0.0002 (9) |
| C10 | 0.0081 (11) | 0.0103 (11) | 0.0122 (11) | −0.0006 (9) | 0.0021 (9) | −0.0021 (9) |
| C11 | 0.0141 (12) | 0.0095 (11) | 0.0126 (12) | 0.0014 (9) | 0.0010 (9) | 0.0009 (9) |
| C13 | 0.0117 (12) | 0.0110 (11) | 0.0131 (12) | −0.0018 (9) | 0.0034 (9) | −0.0020 (9) |
| C12 | 0.0149 (12) | 0.0125 (12) | 0.0105 (11) | −0.0008 (9) | 0.0020 (9) | −0.0009 (9) |
| Zn1—O5 | 2.1276 (19) | N2—C13 | 1.327 (3) |
| Zn1—O5i | 2.1276 (19) | N2—H21 | 0.83 (4) |
| Zn1—O6 | 2.089 (2) | N2—H22 | 0.81 (4) |
| Zn1—O6i | 2.089 (2) | C2—C1 | 1.507 (3) |
| Zn1—N1 | 2.117 (2) | C2—C3 | 1.394 (3) |
| Zn1—N1i | 2.117 (2) | C2—C7 | 1.394 (3) |
| O1—C1 | 1.261 (3) | C3—H3 | 0.9300 |
| O2—C1 | 1.264 (3) | C4—C3 | 1.386 (4) |
| O3—C4 | 1.369 (3) | C5—C4 | 1.395 (4) |
| O3—H3A | 0.83 (5) | C5—C6 | 1.388 (4) |
| O4—C13 | 1.237 (3) | C5—H5 | 0.9300 |
| O5—H51 | 0.85 (5) | C6—H6 | 0.9300 |
| O5—H52 | 0.76 (4) | C7—C6 | 1.388 (4) |
| O6—H61 | 0.83 (5) | C7—H7 | 0.9300 |
| O6—H62 | 0.77 (5) | C8—C9 | 1.379 (3) |
| O7—H71 | 0.85 (5) | C8—H8 | 0.9300 |
| O7—H72A | 0.76 (9) | C9—C10 | 1.392 (3) |
| O7—H72B | 0.78 (13) | C9—H9 | 0.9300 |
| O8—H81 | 0.88 (5) | C10—C11 | 1.389 (3) |
| O8—H82A | 0.69 (8) | C10—C13 | 1.504 (3) |
| O8—H82B | 0.82 (9) | C11—C12 | 1.383 (3) |
| N1—C8 | 1.347 (3) | C11—H11 | 0.9300 |
| N1—C12 | 1.338 (3) | C12—H12 | 0.9300 |
| O5—Zn1—O5i | 180.0 | C3—C2—C1 | 119.4 (2) |
| O6—Zn1—O5 | 93.93 (8) | C3—C2—C7 | 120.3 (2) |
| O6i—Zn1—O5 | 86.07 (8) | C7—C2—C1 | 120.3 (2) |
| O6—Zn1—O5i | 86.07 (8) | C2—C3—H3 | 120.2 |
| O6i—Zn1—O5i | 93.93 (8) | C4—C3—C2 | 119.5 (2) |
| O6—Zn1—O6i | 180.00 (10) | C4—C3—H3 | 120.2 |
| O6—Zn1—N1 | 89.51 (8) | O3—C4—C3 | 118.4 (2) |
| O6i—Zn1—N1 | 90.49 (8) | O3—C4—C5 | 121.2 (2) |
| O6—Zn1—N1i | 90.49 (8) | C3—C4—C5 | 120.4 (2) |
| O6i—Zn1—N1i | 89.51 (8) | C4—C5—H5 | 120.1 |
| N1—Zn1—O5 | 89.07 (8) | C6—C5—C4 | 119.7 (2) |
| N1i—Zn1—O5 | 90.93 (8) | C6—C5—H5 | 120.1 |
| N1—Zn1—O5i | 90.93 (8) | C5—C6—H6 | 119.8 |
| N1i—Zn1—O5i | 89.07 (8) | C7—C6—C5 | 120.3 (2) |
| N1—Zn1—N1i | 180.00 (5) | C7—C6—H6 | 119.8 |
| C4—O3—H3A | 110 (3) | C2—C7—H7 | 120.1 |
| Zn1—O5—H51 | 116 (3) | C6—C7—C2 | 119.7 (2) |
| Zn1—O5—H52 | 123 (3) | C6—C7—H7 | 120.1 |
| H52—O5—H51 | 102 (4) | N1—C8—C9 | 122.7 (2) |
| Zn1—O6—H61 | 123 (3) | N1—C8—H8 | 118.6 |
| Zn1—O6—H62 | 131 (3) | C9—C8—H8 | 118.6 |
| H61—O6—H62 | 103 (4) | C8—C9—C10 | 119.4 (2) |
| H71—O7—H72B | 96 (10) | C8—C9—H9 | 120.3 |
| H72A—O7—H71 | 118 (7) | C10—C9—H9 | 120.3 |
| H72A—O7—H72B | 104 (10) | C9—C10—C13 | 118.3 (2) |
| H81—O8—H82A | 116 (6) | C11—C10—C9 | 118.0 (2) |
| H81—O8—H82B | 106 (8) | C11—C10—C13 | 123.7 (2) |
| H82A—O8—H82B | 96 (9) | C10—C11—H11 | 120.5 |
| C8—N1—Zn1 | 121.81 (17) | C12—C11—C10 | 119.0 (2) |
| C12—N1—Zn1 | 120.62 (17) | C12—C11—H11 | 120.5 |
| C12—N1—C8 | 117.6 (2) | N1—C12—C11 | 123.3 (2) |
| C13—N2—H21 | 122 (3) | N1—C12—H12 | 118.4 |
| C13—N2—H22 | 121 (2) | C11—C12—H12 | 118.4 |
| H22—N2—H21 | 117 (4) | O4—C13—N2 | 123.2 (2) |
| O1—C1—O2 | 123.4 (2) | O4—C13—C10 | 119.1 (2) |
| O1—C1—C2 | 118.1 (2) | N2—C13—C10 | 117.7 (2) |
| O2—C1—C2 | 118.4 (2) | ||
| O5—Zn1—N1—C8 | −131.4 (2) | C1—C2—C7—C6 | −179.7 (2) |
| O5i—Zn1—N1—C8 | 48.6 (2) | C3—C2—C7—C6 | 0.1 (4) |
| O5—Zn1—N1—C12 | 48.9 (2) | O3—C4—C3—C2 | 177.4 (2) |
| O5i—Zn1—N1—C12 | −131.1 (2) | C5—C4—C3—C2 | −1.6 (4) |
| O6—Zn1—N1—C8 | 134.7 (2) | C6—C5—C4—O3 | −178.3 (2) |
| O6i—Zn1—N1—C8 | −45.3 (2) | C6—C5—C4—C3 | 0.6 (4) |
| O6—Zn1—N1—C12 | −45.1 (2) | C4—C5—C6—C7 | 0.7 (4) |
| O6i—Zn1—N1—C12 | 134.9 (2) | C2—C7—C6—C5 | −1.0 (4) |
| Zn1—N1—C8—C9 | 179.39 (19) | N1—C8—C9—C10 | 0.7 (4) |
| C12—N1—C8—C9 | −0.8 (4) | C8—C9—C10—C11 | 0.1 (4) |
| Zn1—N1—C12—C11 | −179.9 (2) | C8—C9—C10—C13 | 179.2 (2) |
| C8—N1—C12—C11 | 0.3 (4) | C9—C10—C11—C12 | −0.6 (4) |
| C3—C2—C1—O1 | −8.0 (4) | C13—C10—C11—C12 | −179.6 (2) |
| C3—C2—C1—O2 | 170.9 (2) | C9—C10—C13—O4 | 5.2 (4) |
| C7—C2—C1—O1 | 171.8 (2) | C9—C10—C13—N2 | −174.0 (2) |
| C7—C2—C1—O2 | −9.3 (4) | C11—C10—C13—O4 | −175.7 (2) |
| C1—C2—C3—C4 | −179.0 (2) | C11—C10—C13—N2 | 5.1 (4) |
| C7—C2—C3—C4 | 1.2 (4) | C10—C11—C12—N1 | 0.4 (4) |
| H··· | ||||
| O3—H3 | 0.83 (5) | 1.88 (5) | 2.705 (3) | 172 (5) |
| N2—H21···O7iii | 0.83 (4) | 2.24 (4) | 3.017 (3) | 157 (3) |
| N2—H22···O2ii | 0.82 (4) | 2.21 (4) | 3.016 (3) | 172 (3) |
| O5—H51···O2i | 0.85 (5) | 1.98 (5) | 2.800 (3) | 162 (4) |
| O5—H52···O3iii | 0.76 (4) | 1.97 (4) | 2.719 (3) | 170 (4) |
| O6—H61···O2iv | 0.83 (5) | 1.89 (5) | 2.689 (3) | 161 (5) |
| O6—H62···O4v | 0.77 (5) | 1.92 (5) | 2.687 (3) | 179 (5) |
| O7—H71···O1 | 0.85 (5) | 1.91 (5) | 2.761 (3) | 178 (3) |
| O7—H72 | 0.76 (9) | 2.08 (9) | 2.814 (4) | 163 (8) |
| O7—H72 | 0.78 (9) | 2.03 (9) | 2.783 (3) | 160 (8) |
| O8—H81···O1 | 0.89 (5) | 1.85 (5) | 2.739 (3) | 177 (4) |
| O8—H82 | 0.69 (8) | 2.13 (8) | 2.814 (4) | 167 (6) |
| O8—H82 | 0.82 (9) | 1.96 (9) | 2.787 (3) | 178 (6) |
| C11—H11···O7iii | 0.93 | 2.54 | 3.455 (3) | 168 |
Hydrogen-bond geometry (Å, °)
|
|
| H⋯ |
|
|
|---|---|---|---|---|
| O3—H3 | 0.83 (5) | 1.88 (5) | 2.705 (3) | 172 (5) |
| N2—H21⋯O7ii | 0.83 (4) | 2.24 (4) | 3.017 (3) | 157 (3) |
| N2—H22⋯O2i | 0.82 (4) | 2.21 (4) | 3.016 (3) | 172 (3) |
| O5—H51⋯O2iii | 0.85 (5) | 1.98 (5) | 2.800 (3) | 162 (4) |
| O5—H52⋯O3ii | 0.76 (4) | 1.97 (4) | 2.719 (3) | 170 (4) |
| O6—H61⋯O2iv | 0.83 (5) | 1.89 (5) | 2.689 (3) | 161 (5) |
| O6—H62⋯O4v | 0.77 (5) | 1.92 (5) | 2.687 (3) | 179 (5) |
| O7—H71⋯O1 | 0.85 (5) | 1.91 (5) | 2.761 (3) | 178 (3) |
| O7—H72 | 0.76 (9) | 2.08 (9) | 2.814 (4) | 163 (8) |
| O7—H72 | 0.78 (9) | 2.03 (9) | 2.783 (3) | 160 (8) |
| O8—H81⋯O1 | 0.89 (5) | 1.85 (5) | 2.739 (3) | 177 (4) |
| O8—H82 | 0.69 (8) | 2.13 (8) | 2.814 (4) | 167 (6) |
| O8—H82 | 0.82 (9) | 1.96 (9) | 2.787 (3) | 178 (6) |
| C11—H11⋯O7ii | 0.93 | 2.54 | 3.455 (3) | 168 |
Symmetry codes: (i) ; (ii) ; (iii) ; (iv) ; (v) ; (vi) ; (vii) ; (viii) ; (ix) .