Literature DB >> 22346867

trans-Tetra-aqua-bis-(isonicotinamide-κN)nickel(II) bis-(3-hy-droxy-benzoate) tetra-hydrate.

Ibrahim Göker Zaman, Nagihan Caylak Delibaş, Hacali Necefoğlu, Tuncer Hökelek.   

Abstract

The asymmetric unit of the title compound, [Ni(C(6)H(6)N(2)O)(2)(H(2)O)(4)](C(7)H(5)O(3))(2)·4H(2)O, contains one-half of the complex cation with the Ni(II) ion located on an inversion center, a 3-hy-droxy-benzoate counter-anion and two uncoordinated water mol-ecules. Four water O atoms in the equatorial plane around the Ni(II) ion [Ni-O = 2.052 (2) and 2.079 (2) Å] form a slightly distorted square-planar arrangement, which is completed up to a distorted octa-hedron by the two N atoms [Ni-N = 2.075 (3) Å] from two isonicotinamide ligands. In the anion, the carboxyl-ate group is twisted from the attached benzene ring by 8.8 (3)°. In the crystal, a three-dimensional hydrogen-bonding network, formed by classical O-H⋯O and N-H⋯O hydrogen bonds, consolidates the crystal packing, which also exhibits π-π inter-actions between the benzene and pyridine rings, with centroid-centroid distances of 3.455 (2) and 3.621 (2) Å, respectively.

Entities:  

Year:  2012        PMID: 22346867      PMCID: PMC3274920          DOI: 10.1107/S1600536812002218

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For general background, see: Bigoli et al. (1972 ▶); Krishnamachari (1974 ▶). For related structures, see: Hökelek et al. (2009a ▶,b ▶,c ▶,d ▶,e ▶); Sertçelik et al. (2009a ▶,b ▶).

Experimental

Crystal data

[Ni(C6H6N2O)2(H2O)4](C7H5O3)2·4H2O M = 721.29 Monoclinic, a = 6.6884 (3) Å b = 16.9271 (5) Å c = 13.5543 (4) Å β = 100.186 (3)° V = 1510.37 (9) Å3 Z = 2 Mo Kα radiation μ = 0.73 mm−1 T = 100 K 0.46 × 0.33 × 0.18 mm

Data collection

Bruker Kappa APEXII CCD area-detector diffractometer Absorption correction: multi-scan (SADABS; Bruker, 2005 ▶) T min = 0.750, T max = 0.877 13495 measured reflections 3723 independent reflections 3365 reflections with I > 2σ(I) R int = 0.029

Refinement

R[F 2 > 2σ(F 2)] = 0.051 wR(F 2) = 0.157 S = 1.26 3723 reflections 256 parameters 12 restraints H atoms treated by a mixture of independent and constrained refinement Δρmax = 0.86 e Å−3 Δρmin = −0.69 e Å−3 Data collection: APEX2 (Bruker, 2007 ▶); cell refinement: SAINT (Bruker, 2007 ▶); data reduction: SAINT; program(s) used to solve structure: SHELXS97 (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: ORTEP-3 for Windows (Farrugia, 1997 ▶); software used to prepare material for publication: WinGX (Farrugia, 1999 ▶) and PLATON (Spek, 2009 ▶). Crystal structure: contains datablock(s) I, global. DOI: 10.1107/S1600536812002218/cv5237sup1.cif Structure factors: contains datablock(s) I. DOI: 10.1107/S1600536812002218/cv5237Isup2.hkl Additional supplementary materials: crystallographic information; 3D view; checkCIF report
[Ni(C6H6N2O)2(H2O)4](C7H5O3)2·4H2OF(000) = 756
Mr = 721.29Dx = 1.586 Mg m3
Monoclinic, P21/nMo Kα radiation, λ = 0.71073 Å
Hall symbol: -P 2ynCell parameters from 7580 reflections
a = 6.6884 (3) Åθ = 2.4–28.4°
b = 16.9271 (5) ŵ = 0.73 mm1
c = 13.5543 (4) ÅT = 100 K
β = 100.186 (3)°Rod-shaped, blue
V = 1510.37 (9) Å30.46 × 0.33 × 0.18 mm
Z = 2
Bruker Kappa APEXII CCD area-detector diffractometer3723 independent reflections
Radiation source: fine-focus sealed tube3365 reflections with I > 2σ(I)
graphiteRint = 0.029
φ and ω scansθmax = 28.6°, θmin = 1.9°
Absorption correction: multi-scan (SADABS; Bruker, 2005)h = −8→8
Tmin = 0.750, Tmax = 0.877k = −22→21
13495 measured reflectionsl = −17→15
Refinement on F2Primary atom site location: structure-invariant direct methods
Least-squares matrix: fullSecondary atom site location: difference Fourier map
R[F2 > 2σ(F2)] = 0.051Hydrogen site location: inferred from neighbouring sites
wR(F2) = 0.157H atoms treated by a mixture of independent and constrained refinement
S = 1.26w = 1/[σ2(Fo2) + (0.0492P)2 + 5.1781P] where P = (Fo2 + 2Fc2)/3
3723 reflections(Δ/σ)max < 0.001
256 parametersΔρmax = 0.86 e Å3
12 restraintsΔρmin = −0.69 e Å3
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/Ueq
Ni10.50000.00000.50000.00840 (16)
O1−0.0786 (4)0.04089 (13)0.29703 (18)0.0135 (5)
O2−0.1778 (4)0.11616 (14)0.16276 (17)0.0145 (5)
O3−0.0150 (4)0.39248 (14)0.27901 (19)0.0151 (5)
H31−0.011 (8)0.428 (3)0.317 (4)0.027 (13)*
O40.3941 (4)0.32984 (14)0.18014 (18)0.0160 (5)
O50.3225 (4)0.04752 (14)0.59662 (18)0.0128 (5)
H510.372 (9)0.068 (3)0.653 (3)0.051 (17)*
H520.245 (8)0.014 (3)0.616 (5)0.054 (18)*
O60.7696 (4)0.03386 (14)0.58654 (19)0.0148 (5)
H610.803 (7)0.0796 (16)0.609 (3)0.026 (12)*
H620.851 (7)0.000 (3)0.618 (4)0.041 (16)*
O70.0025 (4)0.51961 (15)0.40009 (19)0.0168 (5)
H71−0.018 (9)0.508 (4)0.453 (2)0.050*
H72−0.101 (6)0.548 (3)0.380 (4)0.047 (17)*
O80.0926 (4)0.06780 (16)0.04380 (19)0.0192 (5)
H810.196 (5)0.060 (4)0.077 (4)0.050*
H820.021 (7)0.082 (3)0.085 (3)0.047 (17)*
N10.4858 (4)0.10763 (15)0.4259 (2)0.0098 (5)
N20.5148 (5)0.39569 (17)0.3228 (2)0.0140 (6)
H210.525 (7)0.439 (3)0.296 (3)0.017 (11)*
H220.559 (8)0.396 (3)0.385 (4)0.030 (13)*
C1−0.1092 (5)0.10742 (18)0.2549 (2)0.0112 (6)
C2−0.0587 (5)0.18065 (18)0.3173 (2)0.0106 (6)
C3−0.0642 (5)0.25416 (18)0.2706 (2)0.0110 (6)
H3−0.10050.25800.20130.013*
C4−0.0156 (5)0.32139 (18)0.3277 (3)0.0120 (6)
C50.0358 (5)0.31639 (19)0.4314 (3)0.0130 (6)
H50.06840.36190.46940.016*
C60.0386 (5)0.2433 (2)0.4783 (3)0.0137 (6)
H60.07070.23990.54780.016*
C7−0.0068 (5)0.17514 (19)0.4214 (2)0.0121 (6)
H7−0.00260.12610.45260.015*
C80.4370 (5)0.11290 (18)0.3253 (2)0.0113 (6)
H80.41020.06660.28840.014*
C90.4250 (5)0.18391 (18)0.2748 (2)0.0119 (6)
H90.38970.18510.20530.014*
C100.4660 (5)0.25372 (18)0.3287 (2)0.0106 (6)
C110.5176 (5)0.24858 (18)0.4322 (2)0.0124 (6)
H110.54670.29400.47060.015*
C120.5253 (5)0.17508 (19)0.4776 (2)0.0118 (6)
H120.55940.17240.54710.014*
C130.4552 (5)0.33050 (18)0.2717 (2)0.0115 (6)
U11U22U33U12U13U23
Ni10.0102 (3)0.0075 (3)0.0072 (3)−0.00025 (19)0.00071 (19)0.00018 (19)
O10.0146 (11)0.0103 (10)0.0151 (12)0.0006 (8)0.0015 (9)0.0001 (8)
O20.0171 (12)0.0151 (11)0.0105 (11)−0.0004 (9)0.0007 (9)−0.0006 (9)
O30.0218 (13)0.0101 (11)0.0132 (12)0.0002 (9)0.0022 (10)0.0006 (9)
O40.0246 (13)0.0122 (11)0.0107 (11)0.0019 (9)0.0016 (10)0.0017 (8)
O50.0145 (12)0.0136 (11)0.0113 (11)−0.0003 (8)0.0049 (9)−0.0006 (9)
O60.0155 (12)0.0098 (11)0.0162 (12)0.0000 (9)−0.0052 (9)−0.0013 (9)
O70.0199 (13)0.0139 (11)0.0155 (12)0.0031 (9)0.0004 (10)0.0000 (9)
O80.0202 (13)0.0214 (13)0.0173 (13)0.0031 (10)0.0064 (10)0.0001 (10)
N10.0084 (12)0.0117 (12)0.0096 (12)0.0005 (9)0.0025 (10)0.0005 (9)
N20.0199 (15)0.0109 (13)0.0105 (14)−0.0009 (10)0.0007 (11)0.0027 (10)
C10.0072 (13)0.0127 (14)0.0142 (15)0.0003 (10)0.0030 (11)−0.0011 (11)
C20.0079 (14)0.0115 (14)0.0126 (15)0.0008 (10)0.0022 (11)−0.0012 (11)
C30.0095 (14)0.0147 (14)0.0088 (14)0.0014 (11)0.0015 (11)0.0008 (11)
C40.0094 (14)0.0108 (14)0.0160 (16)0.0009 (11)0.0027 (12)0.0020 (12)
C50.0117 (14)0.0129 (14)0.0141 (16)0.0003 (11)0.0019 (12)−0.0030 (11)
C60.0133 (15)0.0172 (15)0.0101 (15)0.0010 (11)0.0010 (12)0.0001 (12)
C70.0129 (15)0.0116 (14)0.0124 (15)0.0017 (11)0.0034 (12)0.0020 (11)
C80.0107 (14)0.0113 (14)0.0118 (15)−0.0002 (11)0.0019 (11)−0.0009 (11)
C90.0120 (14)0.0132 (14)0.0105 (15)0.0002 (11)0.0016 (12)0.0006 (11)
C100.0092 (14)0.0102 (13)0.0125 (15)0.0011 (10)0.0024 (11)0.0018 (11)
C110.0143 (15)0.0100 (14)0.0129 (15)0.0003 (11)0.0026 (12)−0.0011 (11)
C120.0107 (14)0.0135 (14)0.0115 (15)0.0007 (11)0.0028 (11)−0.0003 (11)
C130.0100 (14)0.0119 (14)0.0133 (15)0.0022 (11)0.0038 (12)0.0020 (11)
Ni1—O52.079 (2)N2—H210.83 (5)
Ni1—O5i2.079 (2)N2—H220.84 (5)
Ni1—O62.052 (2)C2—C11.505 (4)
Ni1—O6i2.052 (2)C2—C31.394 (4)
Ni1—N12.075 (3)C2—C71.395 (4)
Ni1—N1i2.075 (3)C3—H30.9300
O1—C11.263 (4)C4—C31.383 (4)
O2—C11.260 (4)C5—C41.389 (5)
O3—C41.373 (4)C5—C61.390 (5)
O3—H310.79 (5)C5—H50.9300
O4—C131.236 (4)C6—H60.9300
O5—H510.85 (2)C7—C61.391 (5)
O5—H520.85 (2)C7—H70.9300
O6—H610.85 (2)C8—H80.9300
O6—H620.85 (2)C9—C81.378 (4)
O7—H710.784 (18)C9—C101.391 (4)
O7—H720.85 (2)C9—H90.9300
O8—H810.769 (18)C10—C111.386 (5)
O8—H820.83 (2)C10—C131.507 (4)
N1—C81.347 (4)C11—H110.9300
N1—C121.341 (4)C12—C111.385 (4)
N2—C131.326 (4)C12—H120.9300
O5—Ni1—O5i180.00 (9)C7—C2—C1120.3 (3)
O6—Ni1—O594.23 (10)C2—C3—H3120.1
O6i—Ni1—O585.77 (10)C4—C3—C2119.7 (3)
O6—Ni1—O5i85.77 (10)C4—C3—H3120.1
O6i—Ni1—O5i94.23 (10)O3—C4—C3118.2 (3)
O6i—Ni1—O6180.0O3—C4—C5121.2 (3)
O6—Ni1—N189.53 (10)C3—C4—C5120.5 (3)
O6i—Ni1—N190.47 (10)C4—C5—C6119.9 (3)
O6—Ni1—N1i90.47 (10)C4—C5—H5120.1
O6i—Ni1—N1i89.53 (10)C6—C5—H5120.1
N1—Ni1—O589.02 (10)C5—C6—C7120.1 (3)
N1i—Ni1—O590.98 (10)C5—C6—H6120.0
N1—Ni1—O5i90.98 (10)C7—C6—H6120.0
N1i—Ni1—O5i89.02 (10)C2—C7—H7120.1
N1i—Ni1—N1180.0C6—C7—C2119.8 (3)
C4—O3—H31111 (4)C6—C7—H7120.1
Ni1—O5—H51123 (4)N1—C8—C9122.8 (3)
Ni1—O5—H52113 (4)N1—C8—H8118.6
H52—O5—H5199 (6)C9—C8—H8118.6
Ni1—O6—H61128 (3)C8—C9—C10119.4 (3)
Ni1—O6—H62121 (4)C8—C9—H9120.3
H61—O6—H62110 (5)C10—C9—H9120.3
H72—O7—H71100 (4)C9—C10—C13118.5 (3)
H81—O8—H82103 (4)C11—C10—C9117.9 (3)
C8—N1—Ni1122.0 (2)C11—C10—C13123.6 (3)
C12—N1—Ni1120.4 (2)C10—C11—H11120.4
C12—N1—C8117.6 (3)C12—C11—C10119.3 (3)
C13—N2—H21123 (3)C12—C11—H11120.4
C13—N2—H22123 (3)N1—C12—C11122.9 (3)
H21—N2—H22113 (4)N1—C12—H12118.5
O1—C1—C2118.5 (3)C11—C12—H12118.5
O2—C1—O1123.7 (3)O4—C13—N2123.2 (3)
O2—C1—C2117.8 (3)O4—C13—C10119.0 (3)
C3—C2—C1119.6 (3)N2—C13—C10117.9 (3)
C3—C2—C7120.1 (3)
O5—Ni1—N1—C8−131.1 (3)C1—C2—C7—C6−179.7 (3)
O5i—Ni1—N1—C848.9 (3)C3—C2—C7—C60.2 (5)
O5—Ni1—N1—C1248.7 (2)O3—C4—C3—C2177.5 (3)
O5i—Ni1—N1—C12−131.3 (2)C5—C4—C3—C2−0.9 (5)
O6—Ni1—N1—C8134.6 (3)C6—C5—C4—O3−178.4 (3)
O6i—Ni1—N1—C8−45.4 (3)C6—C5—C4—C30.0 (5)
O6—Ni1—N1—C12−45.5 (2)C4—C5—C6—C71.1 (5)
O6i—Ni1—N1—C12134.5 (2)C2—C7—C6—C5−1.2 (5)
Ni1—N1—C8—C9179.4 (2)C10—C9—C8—N10.5 (5)
C12—N1—C8—C9−0.5 (5)C8—C9—C10—C11−0.1 (5)
Ni1—N1—C12—C11−179.8 (2)C8—C9—C10—C13179.0 (3)
C8—N1—C12—C110.1 (5)C9—C10—C11—C12−0.3 (5)
C3—C2—C1—O1171.2 (3)C13—C10—C11—C12−179.4 (3)
C3—C2—C1—O2−8.0 (4)C9—C10—C13—O46.0 (5)
C7—C2—C1—O1−8.9 (5)C9—C10—C13—N2−173.2 (3)
C7—C2—C1—O2171.9 (3)C11—C10—C13—O4−175.0 (3)
C1—C2—C3—C4−179.3 (3)C11—C10—C13—N25.8 (5)
C7—C2—C3—C40.8 (5)N1—C12—C11—C100.3 (5)
D—H···AD—HH···AD···AD—H···A
N2—H21···O1ii0.83 (5)2.20 (5)3.018 (4)169 (4)
N2—H22···O8iii0.84 (5)2.21 (5)3.012 (4)159 (5)
O3—H31···O70.79 (5)1.91 (5)2.696 (4)175 (5)
O5—H51···O3iii0.85 (4)1.87 (4)2.716 (3)177 (5)
O5—H52···O1iv0.84 (5)1.99 (6)2.795 (4)160 (6)
O6—H61···O4iii0.85 (3)1.86 (3)2.693 (3)169 (4)
O6—H62···O1i0.85 (5)1.87 (5)2.685 (4)159 (5)
O7—H71···O7v0.78 (4)2.03 (3)2.795 (4)167 (6)
O7—H72···O2vi0.85 (5)1.88 (5)2.731 (4)177 (5)
O8—H81···O7vii0.77 (4)2.10 (4)2.802 (4)152 (6)
O8—H82···O20.83 (4)1.93 (5)2.752 (4)171 (4)
Table 1

Hydrogen-bond geometry (Å, °)

D—H⋯AD—HH⋯ADAD—H⋯A
N2—H21⋯O1i0.83 (5)2.20 (5)3.018 (4)169 (4)
N2—H22⋯O8ii0.84 (5)2.21 (5)3.012 (4)159 (5)
O3—H31⋯O70.79 (5)1.91 (5)2.696 (4)175 (5)
O5—H51⋯O3ii0.85 (4)1.87 (4)2.716 (3)177 (5)
O5—H52⋯O1iii0.84 (5)1.99 (6)2.795 (4)160 (6)
O6—H61⋯O4ii0.85 (3)1.86 (3)2.693 (3)169 (4)
O6—H62⋯O1iv0.85 (5)1.87 (5)2.685 (4)159 (5)
O7—H71⋯O7v0.78 (4)2.03 (3)2.795 (4)167 (6)
O7—H72⋯O2vi0.85 (5)1.88 (5)2.731 (4)177 (5)
O8—H81⋯O7vii0.77 (4)2.10 (4)2.802 (4)152 (6)
O8—H82⋯O20.83 (4)1.93 (5)2.752 (4)171 (4)

Symmetry codes: (i) ; (ii) ; (iii) ; (iv) ; (v) ; (vi) ; (vii) .

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7.  Diaqua-bis(N,N-diethyl-nicotinamide-κN)bis-(4-formyl-benzoato-κO)nickel(II).

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8.  Diaqua-bis(2-bromo-benzoato-κO)bis-(nicotinamide-κN)nickel(II).

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  10 in total
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1.  trans-Tetra-aqua-bis-(isonicotinamide-κN)cobalt(II) bis-(3-hy-droxy-benzoate) tetra-hydrate.

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Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2012-02-04

2.  Crystal structure and Hirshfeld surface analysis of tetra-aqua-bis-(isonicotinamide-κN 1)nickel(II) fumarate.

Authors:  Sevgi Kansiz; Irina A Golenya; Necmi Dege
Journal:  Acta Crystallogr E Crystallogr Commun       Date:  2018-10-02

3.  trans-Tetra-aqua-bis-(isonicotinamide-κN (1))zinc bis-(3-hy-droxy-benzoate) tetra-hydrate.

Authors:  Ibrahim Göker Zaman; Nagihan Caylak Delibaş; Hacali Necefoğlu; Tuncer Hökelek
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2013-03-13
  3 in total

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