Literature DB >> 21577412

Diaqua-bis-(N,N-diethyl-nicotinamide-κN)bis[4-(dimethyl-amino)-benzoato-κO]cobalt(II).

Tuncer Hökelek, Hakan Dal, Barış Tercan, Ozgür Aybirdi, Hacali Necefoğlu.   

Abstract

The title Co(II) complex, [Co(C(9)H(10)NO(2))(2)(C(10)H(14)N(2)O)(2)(H(2)O)(2)], is centrosymmetric. It contains two dimethyl-amino-benzoate (DMAB) and two diethyl-nicotinamide (DENA) ligands and two water mol-ecules, all of them being monodentate. The four O atoms in the equatorial plane around the Co atom form a slightly distorted square-planar arrangement, while the slightly distorted octa-hedral coordination is completed by the two pyridine N atoms of DENA ligands with the Co-N distance of 2.1519 (11) Å in the axial positions. The Co atom is displaced out of the least-squares plane of the carboxyl-ate group by -0.781 (1) Å. The dihedral angle between the carboxyl-ate group and the adjacent benzene ring is 5.05 (7)°, while the pyridine and benzene rings are oriented at a dihedral angle of 71.48 (5)°. In the crystal structure, inter-molecular O-H⋯O and C-H⋯O hydrogen bonds link the mol-ecules into a three-dimensional network. Two weak C-H⋯π inter-actions are also present.

Entities:  

Year:  2009        PMID: 21577412      PMCID: PMC2970090          DOI: 10.1107/S1600536809030980

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For general background, see: Bigoli et al. (1972 ▶); Krishnamachari (1974 ▶). For related structures, see: Hökelek & Necefoğlu (2007 ▶); Sertçelik et al. (2009 ▶).

Experimental

Crystal data

[Co(C9H10NO2)2(C10H14N2O)2(H2O)2] M = 779.79 Monoclinic, a = 6.5184 (1) Å b = 20.4829 (3) Å c = 14.6481 (2) Å β = 98.492 (1)° V = 1934.31 (5) Å3 Z = 2 Mo Kα radiation μ = 0.50 mm−1 T = 100 K 0.42 × 0.22 × 0.12 mm

Data collection

Bruker Kappa APEXII CCD area-detector diffractometer Absorption correction: multi-scan (SADABS; Bruker, 2005 ▶) T min = 0.817, T max = 0.942 18749 measured reflections 4821 independent reflections 4137 reflections with I > 2σ(I) R int = 0.024

Refinement

R[F 2 > 2σ(F 2)] = 0.031 wR(F 2) = 0.081 S = 1.05 4821 reflections 251 parameters 3 restraints H atoms treated by a mixture of independent and constrained refinement Δρmax = 0.40 e Å−3 Δρmin = −0.30 e Å−3 Data collection: APEX2 (Bruker, 2007 ▶); cell refinement: SAINT (Bruker, 2007 ▶); data reduction: SAINT; program(s) used to solve structure: SHELXS97 (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: Mercury (Macrae et al., 2006 ▶); software used to prepare material for publication: WinGX (Farrugia, 1999 ▶) and PLATON (Spek, 2003 ▶). Crystal structure: contains datablocks I, global. DOI: 10.1107/S1600536809030980/xu2578sup1.cif Structure factors: contains datablocks I. DOI: 10.1107/S1600536809030980/xu2578Isup2.hkl Additional supplementary materials: crystallographic information; 3D view; checkCIF report
[Co(C9H10NO2)2(C10H14N2O)2(H2O)2]F(000) = 826
Mr = 779.79Dx = 1.339 Mg m3
Monoclinic, P21/cMo Kα radiation, λ = 0.71073 Å
Hall symbol: -P 2ybcCell parameters from 9065 reflections
a = 6.5184 (1) Åθ = 2.4–28.3°
b = 20.4829 (3) ŵ = 0.50 mm1
c = 14.6481 (2) ÅT = 100 K
β = 98.492 (1)°Block, red
V = 1934.31 (5) Å30.42 × 0.22 × 0.12 mm
Z = 2
Bruker Kappa APEXII CCD area-detector diffractometer4821 independent reflections
Radiation source: fine-focus sealed tube4137 reflections with I > 2σ(I)
graphiteRint = 0.024
φ and ω scansθmax = 28.3°, θmin = 1.7°
Absorption correction: multi-scan (SADABS; Bruker, 2005)h = −8→8
Tmin = 0.817, Tmax = 0.942k = −26→27
18749 measured reflectionsl = −19→19
Refinement on F2Primary atom site location: structure-invariant direct methods
Least-squares matrix: fullSecondary atom site location: difference Fourier map
R[F2 > 2σ(F2)] = 0.031Hydrogen site location: inferred from neighbouring sites
wR(F2) = 0.081H atoms treated by a mixture of independent and constrained refinement
S = 1.05w = 1/[σ2(Fo2) + (0.0382P)2 + 0.7829P] where P = (Fo2 + 2Fc2)/3
4821 reflections(Δ/σ)max < 0.001
251 parametersΔρmax = 0.40 e Å3
3 restraintsΔρmin = −0.30 e Å3
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/Ueq
Co10.50000.50000.50000.01335 (8)
O10.54021 (15)0.50614 (5)0.36270 (6)0.0169 (2)
O20.87853 (15)0.52883 (5)0.37060 (7)0.0196 (2)
O30.76748 (16)0.28543 (5)0.75280 (7)0.0219 (2)
O40.20770 (15)0.45517 (5)0.45875 (7)0.0182 (2)
H410.162 (3)0.4543 (8)0.5144 (10)0.023*
H420.114 (3)0.4789 (9)0.4204 (11)0.023*
N10.63544 (17)0.40399 (6)0.51022 (8)0.0155 (2)
N21.09307 (19)0.27891 (6)0.71639 (8)0.0191 (2)
N30.6955 (2)0.39432 (7)−0.02756 (9)0.0301 (3)
C10.7089 (2)0.50704 (6)0.32932 (9)0.0151 (3)
C20.7037 (2)0.47929 (7)0.23444 (9)0.0163 (3)
C30.5191 (2)0.45744 (7)0.18361 (10)0.0208 (3)
H30.39380.46100.20920.025*
C40.5143 (2)0.43063 (8)0.09649 (10)0.0241 (3)
H40.38570.41700.06280.029*
C50.6975 (2)0.42340 (7)0.05741 (10)0.0224 (3)
C60.8826 (2)0.44567 (8)0.10906 (10)0.0235 (3)
H61.00890.44180.08440.028*
C70.8845 (2)0.47324 (7)0.19537 (10)0.0206 (3)
H71.01180.48830.22860.025*
C80.6312 (2)0.36554 (7)0.43557 (9)0.0172 (3)
H80.56920.38200.37740.021*
C90.7131 (2)0.30305 (7)0.43964 (9)0.0192 (3)
H90.70710.27720.38550.023*
C100.8040 (2)0.27915 (7)0.52449 (10)0.0186 (3)
H100.86150.23650.52950.022*
C110.8101 (2)0.31852 (7)0.60242 (9)0.0153 (3)
C120.7227 (2)0.38028 (7)0.59202 (9)0.0150 (3)
H120.72480.40690.64520.018*
C130.8903 (2)0.29329 (6)0.69730 (9)0.0160 (3)
C141.2464 (2)0.29630 (8)0.65634 (11)0.0251 (3)
H14A1.36490.31870.69370.030*
H14B1.18250.32730.60860.030*
C151.3266 (3)0.23750 (10)0.60918 (14)0.0388 (4)
H15A1.41340.25230.56400.058*
H15B1.20910.21240.57760.058*
H15C1.40890.20990.65550.058*
C161.1660 (2)0.24446 (8)0.80324 (11)0.0248 (3)
H16A1.10230.26470.85370.030*
H16B1.31830.24950.81830.030*
C171.1129 (3)0.17229 (8)0.79793 (12)0.0311 (4)
H17A1.15680.15200.85820.047*
H17B1.18480.15130.75150.047*
H17C0.96280.16700.78060.047*
C180.5005 (3)0.37807 (9)−0.08350 (11)0.0334 (4)
H18A0.52670.3611−0.14320.050*
H18B0.41390.4173−0.09330.050*
H18C0.42870.3448−0.05190.050*
C190.8816 (3)0.39299 (9)−0.06991 (12)0.0361 (4)
H19A0.85230.3719−0.13050.054*
H19B0.98960.3685−0.03050.054*
H19C0.92950.4378−0.07750.054*
U11U22U33U12U13U23
Co10.01466 (13)0.01570 (13)0.00949 (12)0.00226 (9)0.00115 (9)−0.00087 (9)
O10.0169 (5)0.0216 (5)0.0122 (4)0.0031 (4)0.0019 (4)−0.0006 (4)
O20.0188 (5)0.0258 (5)0.0138 (5)−0.0010 (4)0.0015 (4)−0.0012 (4)
O30.0251 (5)0.0259 (5)0.0155 (5)0.0055 (4)0.0056 (4)0.0033 (4)
O40.0183 (5)0.0221 (5)0.0137 (5)0.0017 (4)0.0008 (4)−0.0024 (4)
N10.0156 (5)0.0179 (6)0.0130 (5)0.0010 (4)0.0020 (4)−0.0005 (4)
N20.0193 (6)0.0192 (6)0.0179 (6)0.0021 (5)0.0001 (5)0.0018 (5)
N30.0372 (8)0.0363 (8)0.0173 (6)0.0003 (6)0.0056 (6)−0.0098 (6)
C10.0194 (6)0.0140 (6)0.0118 (6)0.0035 (5)0.0016 (5)0.0023 (5)
C20.0200 (7)0.0168 (6)0.0121 (6)0.0016 (5)0.0028 (5)0.0014 (5)
C30.0207 (7)0.0245 (7)0.0180 (7)−0.0003 (6)0.0050 (6)−0.0027 (6)
C40.0243 (8)0.0290 (8)0.0180 (7)−0.0020 (6)0.0000 (6)−0.0041 (6)
C50.0319 (8)0.0204 (7)0.0153 (7)0.0009 (6)0.0052 (6)−0.0018 (5)
C60.0248 (7)0.0281 (8)0.0193 (7)0.0007 (6)0.0091 (6)−0.0032 (6)
C70.0205 (7)0.0250 (7)0.0164 (7)0.0002 (6)0.0034 (5)−0.0010 (6)
C80.0185 (7)0.0204 (7)0.0126 (6)−0.0010 (5)0.0017 (5)−0.0007 (5)
C90.0235 (7)0.0194 (7)0.0148 (6)−0.0003 (5)0.0035 (5)−0.0048 (5)
C100.0213 (7)0.0162 (6)0.0186 (7)0.0025 (5)0.0038 (5)−0.0021 (5)
C110.0150 (6)0.0184 (6)0.0128 (6)0.0001 (5)0.0030 (5)0.0003 (5)
C120.0153 (6)0.0171 (6)0.0128 (6)−0.0001 (5)0.0022 (5)−0.0019 (5)
C130.0204 (7)0.0121 (6)0.0150 (6)0.0019 (5)0.0008 (5)−0.0017 (5)
C140.0182 (7)0.0306 (8)0.0264 (8)−0.0030 (6)0.0027 (6)−0.0001 (6)
C150.0240 (8)0.0493 (11)0.0455 (11)−0.0045 (8)0.0126 (8)−0.0178 (9)
C160.0257 (8)0.0248 (8)0.0210 (7)0.0051 (6)−0.0058 (6)0.0027 (6)
C170.0355 (9)0.0238 (8)0.0331 (9)0.0070 (7)0.0016 (7)0.0064 (7)
C180.0487 (11)0.0339 (9)0.0168 (7)−0.0074 (8)0.0026 (7)−0.0067 (6)
C190.0560 (12)0.0315 (9)0.0251 (8)−0.0078 (8)0.0200 (8)−0.0086 (7)
Co1—O12.0701 (9)C7—H70.9500
Co1—O1i2.0701 (9)C8—H80.9500
Co1—O42.1209 (10)C9—C81.385 (2)
Co1—O4i2.1209 (10)C9—C101.385 (2)
Co1—N12.1519 (11)C9—H90.9500
Co1—N1i2.1519 (11)C10—C111.3934 (18)
O1—C11.2676 (16)C10—H100.9500
O2—C11.2611 (17)C11—C121.3863 (19)
O3—C131.2332 (17)C12—H120.9500
O4—H410.908 (13)C13—C111.5026 (18)
O4—H420.907 (14)C14—H14A0.9900
N1—C81.3445 (17)C14—H14B0.9900
N1—C121.3393 (17)C15—C141.519 (2)
N2—C131.3423 (18)C15—H15A0.9800
N2—C141.4696 (19)C15—H15B0.9800
N2—C161.4710 (18)C15—H15C0.9800
N3—C51.3782 (18)C16—H16A0.9900
N3—C181.446 (2)C16—H16B0.9900
N3—C191.442 (2)C17—C161.518 (2)
C2—C11.4973 (18)C17—H17A0.9800
C3—C21.392 (2)C17—H17B0.9800
C3—H30.9500C17—H17C0.9800
C4—C31.385 (2)C18—H18A0.9800
C4—C51.406 (2)C18—H18B0.9800
C4—H40.9500C18—H18C0.9800
C6—C71.383 (2)C19—H19A0.9800
C6—C51.403 (2)C19—H19B0.9800
C6—H60.9500C19—H19C0.9800
C7—C21.3896 (19)
O1i—Co1—O1180.0C8—C9—C10118.46 (13)
O1—Co1—O489.24 (4)C8—C9—H9120.8
O1i—Co1—O490.76 (4)C10—C9—H9120.8
O1—Co1—O4i90.76 (4)C9—C10—C11119.15 (13)
O1i—Co1—O4i89.24 (4)C9—C10—H10120.4
O1—Co1—N190.78 (4)C11—C10—H10120.4
O1i—Co1—N189.22 (4)C10—C11—C13121.49 (12)
O1—Co1—N1i89.22 (4)C12—C11—C10118.47 (12)
O1i—Co1—N1i90.78 (4)C12—C11—C13119.79 (12)
O4—Co1—O4i180.00 (5)N1—C12—C11122.85 (12)
O4—Co1—N188.07 (4)N1—C12—H12118.6
O4i—Co1—N191.93 (4)C11—C12—H12118.6
O4—Co1—N1i91.93 (4)O3—C13—N2123.31 (13)
O4i—Co1—N1i88.07 (4)O3—C13—C11118.90 (12)
N1—Co1—N1i180.0N2—C13—C11117.76 (12)
C1—O1—Co1128.10 (9)N2—C14—C15112.96 (14)
Co1—O4—H4198.7 (11)N2—C14—H14A109.0
Co1—O4—H42116.0 (11)N2—C14—H14B109.0
H42—O4—H41106.6 (14)C15—C14—H14A109.0
C8—N1—Co1121.32 (9)C15—C14—H14B109.0
C12—N1—Co1120.62 (9)H14A—C14—H14B107.8
C12—N1—C8118.05 (12)C14—C15—H15A109.5
C13—N2—C14123.91 (12)C14—C15—H15B109.5
C13—N2—C16117.90 (12)C14—C15—H15C109.5
C14—N2—C16118.19 (12)H15A—C15—H15B109.5
C5—N3—C18120.12 (14)H15A—C15—H15C109.5
C5—N3—C19120.00 (14)H15B—C15—H15C109.5
C19—N3—C18118.49 (13)N2—C16—C17112.39 (13)
O1—C1—C2116.77 (12)N2—C16—H16A109.1
O2—C1—O1124.70 (12)N2—C16—H16B109.1
O2—C1—C2118.53 (12)C17—C16—H16A109.1
C3—C2—C1121.19 (12)C17—C16—H16B109.1
C7—C2—C1120.78 (13)H16A—C16—H16B107.9
C7—C2—C3118.01 (13)C16—C17—H17A109.5
C2—C3—H3119.3C16—C17—H17B109.5
C4—C3—C2121.36 (14)C16—C17—H17C109.5
C4—C3—H3119.3H17A—C17—H17B109.5
C3—C4—C5120.77 (14)H17A—C17—H17C109.5
C3—C4—H4119.6H17B—C17—H17C109.5
C5—C4—H4119.6N3—C18—H18A109.5
N3—C5—C4121.18 (14)N3—C18—H18B109.5
N3—C5—C6121.37 (14)N3—C18—H18C109.5
C6—C5—C4117.44 (13)H18A—C18—H18B109.5
C5—C6—H6119.5H18A—C18—H18C109.5
C7—C6—C5121.10 (14)H18B—C18—H18C109.5
C7—C6—H6119.5N3—C19—H19A109.5
C2—C7—H7119.3N3—C19—H19B109.5
C6—C7—C2121.30 (14)N3—C19—H19C109.5
C6—C7—H7119.4H19A—C19—H19B109.5
N1—C8—C9123.02 (13)H19A—C19—H19C109.5
N1—C8—H8118.5H19B—C19—H19C109.5
C9—C8—H8118.5
D—H···AD—HH···AD···AD—H···A
O4—H41···O2i0.91 (2)1.78 (2)2.6621 (14)164 (2)
O4—H42···O2ii0.91 (2)1.90 (2)2.7802 (14)163 (1)
C9—H9···O3iii0.952.413.3447 (17)168
C19—H19A···O3iv0.982.473.403 (2)160
C15—H15A···Cg2v0.982.863.734 (2)148
C18—H18B···Cg1vi0.982.863.7907 (19)158
Table 1

Hydrogen-bond geometry (Å, °)

D—H⋯AD—HH⋯ADAD—H⋯A
O4—H41⋯O2i0.908 (16)1.777 (15)2.6621 (14)164.0 (16)
O4—H42⋯O2ii0.907 (16)1.898 (15)2.7802 (14)163.4 (14)
C9—H9⋯O3iii0.952.413.3447 (17)168
C19—H19A⋯O3iv0.982.473.403 (2)160
C15—H15ACg2v0.982.863.734 (2)148
C18—H18BCg1vi0.982.863.7907 (19)158

Symmetry codes: (i) ; (ii) ; (iii) ; (iv) ; (v) ; (vi) . Cg1 and Cg2 are the cetroids of the C2–C7 and N1/C8–C12 rings, respectively.

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2.  Some aspects of copper metabolism in pellagra.

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3.  Diaqua-bis(N,N-diethyl-nicotinamide-κN)bis-(4-formyl-benzoato-κO)cobalt(II).

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  3 in total
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Authors:  Tuncer Hökelek; Güner Saka; Barış Tercan; Füreya Elif Oztürkkan; Hacali Necefoğlu
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2010-08-18

2.  Dibenzoato-κO;κO,O'-(6,6'-dimethyl-2,2'-bipyridine-κN,N')zinc(II)-benzoic acid (1/1).

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