Literature DB >> 21577469

Tetra-aqua-bis(isonicotinamide-κN)cobalt(II) bis-(4-formyl-benzoate) dihydrate.

Tuncer Hökelek, Filiz Yılmaz, Barış Tercan, Mustafa Sertçelik, Hacali Necefoğlu.   

Abstract

The asymmetric unit of the crystal structure of the title complex, [Co(C(6)H(6)N(2)O)(2)(H(2)O)(4)](C(8)H(5)O(3))(2)·2H(2)O, contains one-half of the complex cation with the Co(II) ion located on an inversion center, a 4-formyl-benzoate (FB) counter-anion and an uncoordinated water mol-ecule. The four O atoms in the equatorial plane around the Co(II) ion form a slightly distorted square-planar arrangement with an average Co-O bond length of 2.086 Å; the slightly distorted octa-hedral coordination is completed by the two N atoms of the isonicotinamide (INA) ligands at a slightly longer distance [2.1603 (14) Å] in the axial positions. The dihedral angle between the carboxyl-ate group and the attached benzene ring is 5.93 (13)°, while the pyridine and benzene rings are oriented at a dihedral angle of 3.09 (6)°. In the crystal structure, O-H⋯O, N-H⋯O and C-H⋯O hydrogen bonds link the mol-ecules into a three-dimensional network. π-π Contacts between the benzene and pyridine rings [centroid-centroid distance = 3.758 (1) Å] may further stabilize the crystal structure.

Entities:  

Year:  2009        PMID: 21577469      PMCID: PMC2969956          DOI: 10.1107/S1600536809033200

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For general background to transition metal complexes of nicotinamide and/or the nicotinic acid derivative N,N-diethyl­nicotinamide, see: Bigoli et al. (1972 ▶); Krishnamachari (1974 ▶). For related structures, see: Hökelek et al. (2009 ▶); Sertçelik et al. (2009 ▶).

Experimental

Crystal data

[Co(C6H6N2O)2(H2O)4](C8H5O3)2·2H2O M = 709.53 Triclinic, a = 6.4490 (2) Å b = 6.8836 (3) Å c = 18.1792 (5) Å α = 81.967 (3)° β = 84.681 (3)° γ = 72.564 (2)° V = 761.28 (5) Å3 Z = 1 Mo Kα radiation μ = 0.64 mm−1 T = 100 K 0.17 × 0.08 × 0.04 mm

Data collection

Bruker Kappa APEXII CCD area-detector diffractometer Absorption correction: multi-scan (SADABS; Bruker, 2005 ▶) T min = 0.943, T max = 0.978 13740 measured reflections 3780 independent reflections 2884 reflections with I > 2σ(I) R int = 0.054

Refinement

R[F 2 > 2σ(F 2)] = 0.034 wR(F 2) = 0.074 S = 0.98 3780 reflections 236 parameters 9 restraints H atoms treated by a mixture of independent and constrained refinement Δρmax = 0.36 e Å−3 Δρmin = −0.41 e Å−3 Data collection: APEX2 (Bruker, 2007 ▶); cell refinement: SAINT (Bruker, 2007 ▶); data reduction: SAINT; program(s) used to solve structure: SHELXS97 (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: Mercury (Macrae et al., 2006 ▶); software used to prepare material for publication: WinGX (Farrugia, 1999 ▶) and PLATON (Spek, 2009 ▶). Crystal structure: contains datablocks I, global. DOI: 10.1107/S1600536809033200/xu2594sup1.cif Structure factors: contains datablocks I. DOI: 10.1107/S1600536809033200/xu2594Isup2.hkl Additional supplementary materials: crystallographic information; 3D view; checkCIF report
[Co(C6H6N2O)2(H2O)4](C8H5O3)2·2H2OZ = 1
Mr = 709.53F(000) = 369
Triclinic, P1Dx = 1.548 Mg m3
Hall symbol: -P 1Mo Kα radiation, λ = 0.71073 Å
a = 6.4490 (2) ÅCell parameters from 4050 reflections
b = 6.8836 (3) Åθ = 1.1–28.4°
c = 18.1792 (5) ŵ = 0.64 mm1
α = 81.967 (3)°T = 100 K
β = 84.681 (3)°Rod-shaped, orange
γ = 72.564 (2)°0.17 × 0.08 × 0.04 mm
V = 761.28 (5) Å3
Bruker Kappa APEXII CCD area-detector diffractometer3780 independent reflections
Radiation source: fine-focus sealed tube2884 reflections with I > 2σ(I)
graphiteRint = 0.054
φ and ω scansθmax = 28.4°, θmin = 1.1°
Absorption correction: multi-scan (SADABS; Bruker, 2005)h = −8→8
Tmin = 0.943, Tmax = 0.978k = −9→8
13740 measured reflectionsl = −24→24
Refinement on F2Primary atom site location: structure-invariant direct methods
Least-squares matrix: fullSecondary atom site location: difference Fourier map
R[F2 > 2σ(F2)] = 0.034Hydrogen site location: inferred from neighbouring sites
wR(F2) = 0.074H atoms treated by a mixture of independent and constrained refinement
S = 0.98w = 1/[σ2(Fo2) + (0.0308P)2] where P = (Fo2 + 2Fc2)/3
3780 reflections(Δ/σ)max < 0.001
236 parametersΔρmax = 0.36 e Å3
9 restraintsΔρmin = −0.41 e Å3
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/Ueq
Co10.00000.00000.00000.01071 (11)
O1−0.3206 (2)0.68183 (19)−0.08763 (7)0.0168 (3)
O20.0316 (2)0.55083 (19)−0.12091 (7)0.0154 (3)
O30.6316 (2)−0.2347 (2)0.31750 (7)0.0191 (3)
O4−0.5540 (2)0.7430 (2)−0.46372 (7)0.0249 (3)
O50.1816 (2)0.2025 (2)−0.02613 (7)0.0129 (3)
H510.226 (3)0.251 (3)0.0122 (9)0.015*
H520.122 (3)0.309 (2)−0.0568 (9)0.015*
O60.2398 (2)−0.2399 (2)−0.04719 (7)0.0154 (3)
H610.382 (2)−0.268 (3)−0.0613 (10)0.015*
H620.189 (3)−0.321 (3)−0.0685 (10)0.015*
O70.1474 (2)0.1218 (2)0.58230 (7)0.0212 (3)
H710.222 (3)0.165 (3)0.6122 (9)0.015*
H720.239 (3)−0.002 (2)0.5679 (10)0.015*
N10.1381 (2)−0.0933 (2)0.10768 (8)0.0118 (3)
N20.3064 (2)−0.1744 (2)0.38109 (8)0.0159 (4)
H2A0.3647−0.19010.42300.019*
H2B0.1675−0.14610.37960.019*
C1−0.1665 (3)0.6195 (3)−0.13455 (10)0.0133 (4)
C2−0.2240 (3)0.6309 (3)−0.21448 (10)0.0119 (4)
C3−0.0588 (3)0.5837 (3)−0.26939 (10)0.0149 (4)
H30.08590.5438−0.25700.018*
C4−0.1087 (3)0.5957 (3)−0.34277 (10)0.0164 (4)
H40.00230.5630−0.37950.020*
C5−0.3246 (3)0.6567 (3)−0.36142 (10)0.0150 (4)
C6−0.4913 (3)0.7031 (3)−0.30633 (10)0.0146 (4)
H6−0.63590.7427−0.31870.018*
C7−0.4407 (3)0.6900 (3)−0.23320 (10)0.0140 (4)
H7−0.55170.7206−0.19640.017*
C80.0137 (3)−0.0686 (3)0.17118 (10)0.0130 (4)
H8−0.1367−0.02790.16830.016*
C90.0981 (3)−0.1008 (3)0.24058 (10)0.0128 (4)
H90.0057−0.08070.28300.015*
C100.3216 (3)−0.1633 (3)0.24610 (10)0.0114 (4)
C110.4511 (3)−0.1974 (3)0.18124 (10)0.0137 (4)
H110.6018−0.24480.18300.016*
C120.3547 (3)−0.1602 (3)0.11403 (10)0.0146 (4)
H120.4440−0.18270.07100.018*
C130.4314 (3)−0.1941 (3)0.31843 (10)0.0132 (4)
C14−0.3744 (3)0.6684 (3)−0.43957 (11)0.0203 (5)
H14−0.251 (3)0.611 (3)−0.4732 (11)0.025 (6)*
U11U22U33U12U13U23
Co10.0088 (2)0.0147 (2)0.00937 (19)−0.00406 (16)−0.00113 (14)−0.00213 (14)
O10.0131 (7)0.0241 (8)0.0145 (7)−0.0058 (6)−0.0016 (5)−0.0053 (6)
O20.0110 (7)0.0181 (7)0.0175 (7)−0.0034 (6)−0.0053 (5)−0.0027 (6)
O30.0116 (7)0.0274 (8)0.0181 (7)−0.0028 (6)−0.0042 (6)−0.0068 (6)
O40.0248 (8)0.0311 (9)0.0159 (7)−0.0013 (7)−0.0082 (6)−0.0036 (6)
O50.0124 (7)0.0173 (7)0.0101 (7)−0.0054 (6)−0.0040 (5)−0.0007 (5)
O60.0100 (7)0.0195 (8)0.0186 (7)−0.0049 (6)0.0001 (6)−0.0078 (6)
O70.0157 (8)0.0304 (9)0.0191 (7)−0.0062 (7)−0.0028 (6)−0.0079 (6)
N10.0107 (8)0.0134 (8)0.0123 (8)−0.0047 (7)−0.0004 (6)−0.0021 (6)
N20.0137 (8)0.0243 (9)0.0106 (8)−0.0048 (7)−0.0051 (6)−0.0033 (7)
C10.0166 (10)0.0101 (10)0.0147 (9)−0.0058 (8)−0.0034 (8)−0.0011 (7)
C20.0132 (10)0.0095 (9)0.0138 (9)−0.0041 (8)−0.0028 (7)−0.0006 (7)
C30.0114 (10)0.0148 (10)0.0185 (10)−0.0031 (8)−0.0032 (8)−0.0024 (8)
C40.0154 (10)0.0163 (10)0.0155 (10)−0.0024 (8)0.0017 (8)−0.0020 (8)
C50.0193 (10)0.0133 (10)0.0126 (9)−0.0045 (8)−0.0025 (8)−0.0012 (8)
C60.0114 (10)0.0160 (10)0.0166 (10)−0.0033 (8)−0.0042 (8)−0.0018 (8)
C70.0138 (10)0.0132 (10)0.0146 (9)−0.0029 (8)−0.0001 (8)−0.0028 (8)
C80.0091 (9)0.0152 (10)0.0140 (9)−0.0023 (8)−0.0018 (7)−0.0015 (8)
C90.0122 (10)0.0160 (10)0.0104 (9)−0.0048 (8)0.0010 (7)−0.0022 (7)
C100.0141 (10)0.0085 (9)0.0127 (9)−0.0038 (8)−0.0039 (7)−0.0014 (7)
C110.0089 (9)0.0168 (10)0.0161 (10)−0.0040 (8)−0.0032 (7)−0.0021 (8)
C120.0108 (10)0.0190 (10)0.0136 (9)−0.0036 (8)0.0005 (7)−0.0028 (8)
C130.0147 (10)0.0112 (10)0.0143 (9)−0.0031 (8)−0.0035 (8)−0.0027 (7)
C140.0236 (12)0.0214 (11)0.0143 (10)−0.0039 (10)0.0002 (9)−0.0033 (9)
Co1—O52.0570 (13)C2—C31.387 (2)
Co1—O5i2.0570 (13)C3—C41.387 (2)
Co1—O62.1151 (12)C3—H30.9300
Co1—O6i2.1151 (12)C4—H40.9300
Co1—N12.1603 (14)C5—C41.388 (3)
Co1—N1i2.1603 (14)C5—C141.471 (3)
O1—C11.261 (2)C6—C51.394 (2)
O2—C11.257 (2)C6—C71.382 (2)
O3—C131.236 (2)C6—H60.9300
O4—C141.214 (2)C7—C21.394 (2)
O5—H510.916 (13)C7—H70.9300
O5—H520.865 (14)C8—H80.9300
O6—H610.899 (13)C9—C81.383 (2)
O6—H620.871 (14)C9—C101.384 (2)
O7—H710.892 (14)C9—H90.9300
O7—H720.935 (13)C10—C111.386 (2)
N1—C81.344 (2)C10—C131.510 (2)
N1—C121.344 (2)C11—C121.380 (2)
N2—C131.331 (2)C11—H110.9300
N2—H2A0.8600C12—H120.9300
N2—H2B0.8600C14—H140.976 (19)
C2—C11.518 (2)
O5—Co1—O5i180.00 (4)C4—C3—C2120.16 (17)
O5—Co1—O693.11 (5)C4—C3—H3119.9
O5i—Co1—O686.89 (5)C3—C4—C5119.95 (17)
O5—Co1—O6i86.89 (5)C3—C4—H4120.0
O5i—Co1—O6i93.11 (5)C5—C4—H4120.0
O5—Co1—N190.50 (5)C4—C5—C6120.09 (16)
O5i—Co1—N189.50 (5)C4—C5—C14119.15 (17)
O5—Co1—N1i89.50 (5)C6—C5—C14120.75 (17)
O5i—Co1—N1i90.50 (5)C5—C6—H6120.1
O6—Co1—O6i180.00 (9)C7—C6—C5119.78 (17)
O6—Co1—N191.81 (5)C7—C6—H6120.1
O6i—Co1—N188.19 (5)C2—C7—H7119.9
O6—Co1—N1i88.19 (5)C6—C7—C2120.21 (17)
O6i—Co1—N1i91.81 (5)C6—C7—H7119.9
N1i—Co1—N1180.00 (3)N1—C8—C9123.34 (16)
Co1—O5—H51118.1 (12)N1—C8—H8118.3
Co1—O5—H52114.2 (12)C9—C8—H8118.3
H51—O5—H52106.5 (16)C8—C9—C10119.24 (16)
Co1—O6—H61136.9 (12)C8—C9—H9120.4
Co1—O6—H62114.8 (12)C10—C9—H9120.4
H62—O6—H61106.4 (16)C9—C10—C11117.81 (16)
H71—O7—H72106.5 (15)C9—C10—C13123.74 (16)
C8—N1—Co1121.76 (12)C11—C10—C13118.44 (16)
C12—N1—Co1121.13 (12)C10—C11—H11120.3
C12—N1—C8116.80 (15)C12—C11—C10119.46 (17)
C13—N2—H2A120.0C12—C11—H11120.3
C13—N2—H2B120.0N1—C12—C11123.26 (16)
H2A—N2—H2B120.0N1—C12—H12118.4
O2—C1—O1125.45 (16)C11—C12—H12118.4
O2—C1—C2117.12 (16)O3—C13—N2122.54 (16)
O1—C1—C2117.42 (16)O3—C13—C10119.36 (16)
C3—C2—C1119.50 (16)N2—C13—C10118.09 (16)
C3—C2—C7119.82 (16)O4—C14—C5124.77 (19)
C7—C2—C1120.68 (16)O4—C14—H14119.5 (11)
C2—C3—H3119.9C5—C14—H14115.7 (11)
O5—Co1—N1—C8119.00 (13)C6—C5—C4—C3−0.9 (3)
O5i—Co1—N1—C8−61.00 (13)C14—C5—C4—C3−179.95 (17)
O5—Co1—N1—C12−54.41 (14)C4—C5—C14—O4−170.50 (19)
O5i—Co1—N1—C12125.59 (14)C6—C5—C14—O410.4 (3)
O6—Co1—N1—C8−147.87 (13)C7—C6—C5—C40.6 (3)
O6i—Co1—N1—C832.13 (13)C7—C6—C5—C14179.65 (17)
O6—Co1—N1—C1238.72 (14)C5—C6—C7—C20.1 (3)
O6i—Co1—N1—C12−141.28 (14)C6—C7—C2—C1178.94 (16)
Co1—N1—C8—C9−171.09 (13)C6—C7—C2—C3−0.5 (3)
C12—N1—C8—C92.6 (3)C10—C9—C8—N1−0.6 (3)
Co1—N1—C12—C11171.72 (14)C8—C9—C10—C11−2.1 (3)
C8—N1—C12—C11−2.0 (3)C8—C9—C10—C13177.26 (16)
C3—C2—C1—O1173.53 (16)C9—C10—C11—C122.6 (3)
C3—C2—C1—O2−5.6 (2)C13—C10—C11—C12−176.75 (16)
C7—C2—C1—O1−5.9 (3)C9—C10—C13—O3−174.44 (17)
C7—C2—C1—O2174.98 (16)C9—C10—C13—N25.0 (3)
C1—C2—C3—C4−179.23 (16)C11—C10—C13—O34.9 (3)
C7—C2—C3—C40.2 (3)C11—C10—C13—N2−175.59 (16)
C2—C3—C4—C50.5 (3)C10—C11—C12—N1−0.6 (3)
D—H···AD—HH···AD···AD—H···A
N2—H2A···O4ii0.862.132.9680 (19)166
N2—H2B···O7iii0.862.052.8659 (19)158
O5—H51···O1iv0.92 (2)1.72 (2)2.6355 (18)175 (2)
O5—H52···O20.87 (2)1.86 (2)2.7236 (18)171 (2)
O6—H61···O1v0.90 (2)1.87 (2)2.7707 (19)177 (1)
O6—H62···O2vi0.87 (2)1.92 (2)2.7760 (19)168 (2)
O7—H71···O3vii0.89 (2)1.85 (2)2.7371 (19)174 (2)
O7—H72···O4ii0.94 (2)1.98 (2)2.9168 (19)177 (2)
C9—H9···O7iii0.932.563.458 (2)161
C12—H12···O5viii0.932.453.210 (2)139
Table 1

Selected bond lengths (Å)

Co1—O52.0570 (13)
Co1—O62.1151 (12)
Co1—N12.1603 (14)
Table 2

Hydrogen-bond geometry (Å, °)

D—H⋯AD—HH⋯ADAD—H⋯A
N2—H2A⋯O4i0.862.132.9680 (19)166
N2—H2B⋯O7ii0.862.052.8659 (19)158
O5—H51⋯O1iii0.916 (18)1.723 (18)2.6355 (18)174.5 (18)
O5—H52⋯O20.868 (15)1.863 (15)2.7236 (18)171.1 (18)
O6—H61⋯O1iv0.899 (15)1.872 (15)2.7707 (19)177.3 (11)
O6—H62⋯O2v0.87 (2)1.92 (2)2.7760 (19)168 (2)
O7—H71⋯O3vi0.891 (19)1.850 (18)2.7371 (19)173.7 (18)
O7—H72⋯O4i0.936 (15)1.982 (15)2.9168 (19)176.8 (17)
C9—H9⋯O7ii0.932.563.458 (2)161
C12—H12⋯O5vii0.932.453.210 (2)139

Symmetry codes: (i) ; (ii) ; (iii) ; (iv) ; (v) ; (vi) ; (vii) .

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