Literature DB >> 22412408

trans-Tetra-aqua-bis-(isonicotinamide-κN)cobalt(II) bis-(3-hy-droxy-benzoate) tetra-hydrate.

Iibrahim Göker Zaman, Nagihan Caylak Delibaş, Hacali Necefoğlu, Tuncer Hökelek.   

Abstract

The asymmetric unit of the title compound, [n class="Chemical">Co(C(6)H(6)N(2)O)(2)(H(2)O)(4)](C(7)H(5)O(3))(2)·4H(2)O, contains one-half of the complex cation with the Co(II) ion located on an inversion center, a 3-hy-droxy-benzoate counter-anion and two uncoordinated water mol-ecules. Four water O atoms in the equatorial plane around the Co(II) ion [Co-O = 2.0593 (16) and 2.1118 (16) Å] form a slightly distorted square-planar arrangement, and the distorted octahedral geometry is completed by the two N atoms [Co-N = 2.1306 (18) Å] from two isonicotinamide ligands. In the anion, the carboxyl-ate group is twisted from the attached benzene ring at 8.84 (17)°. In the crystal, a three-dimensional hydrogen-bonding network, formed by classical O-H⋯O and N-H⋯O hydrogen bonds, consolidates the crystal packing, which exhibits π-π inter-actions between the benzene and pyridine rings, with centroid-centroid distances of 3.458 (1) and 3.606 (1) Å, respectively.

Entities:  

Year:  2012        PMID: 22412408      PMCID: PMC3297218          DOI: 10.1107/S1600536812003911

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For related structures, see: Hökelek, Dal, Tercan, Özbek et al. (2009 ▶); Hökelek, Dal, Tercan, Aybirdi et al. (2009 ▶); Hökelek, Yılmaz, Tercan, Gürgen et al. (2009 ▶); Hökelek, Yılmaz, Tercan, Özbek et al. (2009 ▶); Hökelek, Yılmaz, Tercan, Sertçelik et al. (2009 ▶); Sertçelik et al. (2009 ▶); Zaman et al. (2012 ▶).

Experimental

Crystal data

[Co(C6n class="Species">H6N2O)2(H2O)4](C7H5O3)2·4H2O M = 721.53 Monoclinic, a = 6.7032 (2) Å b = 17.0523 (4) Å c = 13.5406 (3) Å β = 100.194 (3)° V = 1523.32 (7) Å3 Z = 2 Mo Kα radiation μ = 0.65 mm−1 T = 100 K 0.29 × 0.28 × 0.14 mm

Data collection

Bruker Kappa APEXII CCD area-detector diffractometer Absorption correction: multi-scan (SADABS; Bruker, 2005 ▶) T min = 0.840, T max = 0.916 14243 measured reflections 3779 independent reflections 3590 reflections with I > 2σ(I) R int = 0.019

Refinement

R[F 2 > 2σ(F 2)] = 0.034 wR(F 2) = 0.086 S = 1.23 3779 reflections 258 parameters 16 restraints H atoms treated by a mixture of independent and n class="Chemical">constrained refinement Δρmax = 0.47 e Å−3 Δρmin = −0.42 e Å−3 Data collection: APEX2 (Bruker, 2007 ▶); cell refinement: SAIn class="Chemical">NT (Bruker, 2007 ▶); data reduction: SAINT; program(s) used to solve structure: SHELXS97 (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: Mercury (Macrae et al., 2006 ▶); software used to prepare material for publication: WinGX (Farrugia, 1999 ▶) and PLATON (Spek, 2009 ▶). Crystal structure: contains datablock(s) I, global. DOI: 10.1107/S1600536812003911/cv5239sup1.cif Structure factors: contains datablock(s) I. DOI: 10.1107/S1600536812003911/cv5239Isup2.hkl Additional supplementary materials: crystallographic information; 3D view; checkCIF report
[Co(C6H6N2O)2(H2O)4](C7H5O3)2·4H2OF(000) = 754
Mr = 721.53Dx = 1.573 Mg m3
Monoclinic, P21/nMo Kα radiation, λ = 0.71073 Å
Hall symbol: -P 2ynCell parameters from 9057 reflections
a = 6.7032 (2) Åθ = 2.4–28.4°
b = 17.0523 (4) ŵ = 0.65 mm1
c = 13.5406 (3) ÅT = 100 K
β = 100.194 (3)°Block, orange
V = 1523.32 (7) Å30.29 × 0.28 × 0.14 mm
Z = 2
Bruker Kappa APEXII CCD area-detector diffractometer3779 independent reflections
Radiation source: fine-focus sealed tube3590 reflections with I > 2σ(I)
Graphite monochromatorRint = 0.019
φ and ω scansθmax = 28.4°, θmin = 2.4°
Absorption correction: multi-scan (SADABS; Bruker, 2005)h = −8→8
Tmin = 0.840, Tmax = 0.916k = −22→21
14243 measured reflectionsl = −15→18
Refinement on F2Primary atom site location: structure-invariant direct methods
Least-squares matrix: fullSecondary atom site location: difference Fourier map
R[F2 > 2σ(F2)] = 0.034Hydrogen site location: inferred from neighbouring sites
wR(F2) = 0.086H atoms treated by a mixture of independent and constrained refinement
S = 1.23w = 1/[σ2(Fo2) + (0.0269P)2 + 1.4849P] where P = (Fo2 + 2Fc2)/3
3779 reflections(Δ/σ)max < 0.001
258 parametersΔρmax = 0.47 e Å3
16 restraintsΔρmin = −0.42 e Å3
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/Ueq
Co10.50000.00000.50000.00895 (12)
O10.1791 (2)0.11648 (9)0.83771 (12)0.0148 (3)
O20.0778 (2)0.04189 (9)0.70323 (12)0.0136 (3)
O30.0160 (3)0.39111 (10)0.72117 (13)0.0160 (3)
H310.005 (6)0.430 (2)0.675 (3)0.045 (11)*
O40.6007 (3)0.33160 (9)0.81945 (12)0.0166 (3)
O50.6814 (2)0.04700 (10)0.40186 (12)0.0141 (3)
H510.627 (6)0.074 (2)0.341 (2)0.057 (12)*
H520.759 (5)0.0138 (18)0.380 (3)0.039 (10)*
O60.2333 (2)0.03327 (10)0.40967 (13)0.0157 (3)
H610.190 (5)0.0815 (12)0.378 (3)0.039 (10)*
H620.151 (5)0.0013 (15)0.381 (3)0.039 (10)*
O7−0.0014 (3)0.51872 (10)0.60055 (13)0.0168 (3)
H710.113 (5)0.554 (2)0.623 (3)0.056 (12)*
H72−0.006 (10)0.516 (4)0.541 (2)0.13 (3)*
O8−0.0938 (3)0.06685 (11)0.95512 (13)0.0195 (4)
H81−0.006 (5)0.086 (2)0.912 (3)0.049 (11)*
H82−0.200 (6)0.054 (4)0.917 (4)0.16 (3)*
N10.5124 (3)0.11063 (11)0.57398 (14)0.0107 (3)
N20.4839 (3)0.39703 (12)0.67598 (15)0.0144 (4)
H210.473 (5)0.441 (2)0.705 (2)0.023 (8)*
H220.440 (5)0.396 (2)0.613 (3)0.030 (9)*
C10.1091 (3)0.10798 (13)0.74547 (16)0.0112 (4)
C20.0580 (3)0.18067 (12)0.68279 (16)0.0106 (4)
C30.0646 (3)0.25369 (13)0.72979 (16)0.0118 (4)
H30.10190.25750.79910.014*
C40.0151 (3)0.32060 (13)0.67240 (17)0.0122 (4)
C5−0.0363 (3)0.31556 (13)0.56836 (17)0.0141 (4)
H5−0.06780.36070.53020.017*
C6−0.0403 (3)0.24293 (14)0.52186 (17)0.0141 (4)
H6−0.07350.23950.45230.017*
C70.0052 (3)0.17518 (13)0.57864 (17)0.0126 (4)
H70.00040.12650.54730.015*
C80.5612 (3)0.11620 (13)0.67453 (16)0.0117 (4)
H80.58800.07030.71170.014*
C90.5732 (3)0.18675 (13)0.72507 (17)0.0124 (4)
H90.60910.18810.79460.015*
C100.5308 (3)0.25590 (12)0.67073 (16)0.0108 (4)
C110.4790 (3)0.25056 (13)0.56688 (17)0.0122 (4)
H110.44910.29550.52810.015*
C120.4724 (3)0.17733 (13)0.52206 (16)0.0119 (4)
H120.43860.17440.45250.014*
C130.5415 (3)0.33216 (13)0.72758 (17)0.0118 (4)
U11U22U33U12U13U23
Co10.01097 (19)0.0073 (2)0.00830 (19)0.00020 (14)0.00093 (14)−0.00006 (14)
O10.0186 (8)0.0140 (8)0.0116 (7)0.0004 (6)0.0015 (6)0.0008 (6)
O20.0155 (7)0.0089 (7)0.0159 (8)−0.0015 (6)0.0015 (6)−0.0008 (6)
O30.0239 (8)0.0094 (7)0.0144 (8)−0.0002 (6)0.0022 (6)−0.0015 (6)
O40.0260 (9)0.0117 (8)0.0113 (8)−0.0024 (6)0.0011 (6)−0.0020 (6)
O50.0170 (8)0.0133 (8)0.0132 (7)0.0007 (6)0.0060 (6)0.0012 (6)
O60.0159 (8)0.0094 (7)0.0188 (8)0.0001 (6)−0.0048 (6)0.0009 (6)
O70.0196 (8)0.0134 (8)0.0164 (8)−0.0028 (6)0.0006 (7)0.0005 (6)
O80.0235 (9)0.0188 (9)0.0177 (8)−0.0023 (7)0.0076 (7)−0.0004 (7)
N10.0102 (8)0.0107 (8)0.0113 (8)−0.0007 (6)0.0020 (6)−0.0010 (7)
N20.0211 (9)0.0097 (9)0.0117 (9)0.0005 (7)0.0014 (8)−0.0025 (7)
C10.0091 (9)0.0118 (10)0.0134 (10)−0.0006 (7)0.0035 (7)0.0011 (8)
C20.0094 (9)0.0104 (10)0.0125 (10)−0.0010 (7)0.0027 (7)0.0016 (7)
C30.0119 (9)0.0127 (10)0.0108 (9)−0.0021 (7)0.0016 (8)−0.0003 (8)
C40.0110 (9)0.0098 (10)0.0159 (10)−0.0008 (7)0.0023 (8)−0.0016 (8)
C50.0145 (10)0.0121 (10)0.0153 (10)−0.0012 (8)0.0018 (8)0.0033 (8)
C60.0145 (10)0.0163 (11)0.0110 (10)−0.0013 (8)0.0009 (8)0.0001 (8)
C70.0125 (9)0.0116 (10)0.0139 (10)−0.0021 (7)0.0028 (8)−0.0017 (8)
C80.0132 (9)0.0095 (9)0.0122 (10)0.0000 (7)0.0023 (8)0.0012 (8)
C90.0127 (9)0.0128 (10)0.0116 (10)−0.0006 (8)0.0014 (8)−0.0003 (8)
C100.0094 (9)0.0092 (9)0.0138 (10)−0.0011 (7)0.0025 (7)−0.0013 (8)
C110.0136 (9)0.0094 (10)0.0132 (10)−0.0008 (7)0.0019 (8)0.0008 (8)
C120.0129 (9)0.0115 (10)0.0114 (10)−0.0012 (7)0.0022 (8)−0.0007 (8)
C130.0120 (9)0.0108 (10)0.0132 (10)−0.0026 (7)0.0039 (8)−0.0019 (8)
Co1—O52.1118 (16)N2—H210.85 (3)
Co1—O5i2.1118 (16)N2—H220.85 (4)
Co1—O62.0593 (16)C2—C11.507 (3)
Co1—O6i2.0593 (16)C2—C31.396 (3)
Co1—N12.1306 (18)C2—C71.395 (3)
Co1—N1i2.1306 (18)C3—H30.9300
O1—C11.262 (3)C4—C31.387 (3)
O2—C11.264 (3)C5—C41.392 (3)
O3—C41.371 (3)C5—C61.388 (3)
O3—H310.91 (4)C5—H50.9300
O4—C131.237 (3)C6—H60.9300
O5—H510.963 (18)C7—C61.391 (3)
O5—H520.85 (2)C7—H70.9300
O6—H610.948 (17)C8—C91.379 (3)
O6—H620.82 (2)C8—H80.9300
O7—H710.978 (18)C9—C101.392 (3)
O7—H720.81 (2)C9—H90.9300
O8—H810.960 (18)C11—C101.390 (3)
O8—H820.83 (3)C11—C121.386 (3)
N1—C81.346 (3)C11—H110.9300
N1—C121.339 (3)C12—H120.9300
N2—C131.328 (3)C13—C101.506 (3)
O5i—Co1—O5180.0C7—C2—C3120.2 (2)
O5—Co1—N188.91 (7)C2—C3—H3120.2
O5—Co1—N1i91.09 (7)C4—C3—C2119.6 (2)
O5i—Co1—N191.09 (7)C4—C3—H3120.2
O5i—Co1—N1i88.91 (7)O3—C4—C3118.1 (2)
O6—Co1—O593.32 (7)O3—C4—C5121.4 (2)
O6—Co1—O5i86.68 (7)C3—C4—C5120.5 (2)
O6i—Co1—O5i93.32 (7)C4—C5—H5120.1
O6i—Co1—O586.68 (7)C6—C5—C4119.7 (2)
O6—Co1—O6i180.0C6—C5—H5120.1
O6—Co1—N189.59 (7)C5—C6—C7120.4 (2)
O6i—Co1—N190.41 (7)C5—C6—H6119.8
O6—Co1—N1i90.41 (7)C7—C6—H6119.8
O6i—Co1—N1i89.59 (7)C2—C7—H7120.2
N1i—Co1—N1180.0C6—C7—C2119.6 (2)
C4—O3—H31108 (2)C6—C7—H7120.2
Co1—O5—H51123 (2)N1—C8—C9123.1 (2)
Co1—O5—H52115 (2)N1—C8—H8118.5
H52—O5—H51101 (3)C9—C8—H8118.5
Co1—O6—H61132 (2)C8—C9—C10119.2 (2)
Co1—O6—H62123 (2)C8—C9—H9120.4
H62—O6—H61104 (2)C10—C9—H9120.4
H71—O7—H72104 (3)C9—C10—C13118.31 (19)
H81—O8—H82105 (3)C11—C10—C9118.0 (2)
C8—N1—Co1121.36 (14)C11—C10—C13123.65 (19)
C12—N1—Co1121.18 (14)C10—C11—H11120.5
C12—N1—C8117.46 (19)C12—C11—C10119.0 (2)
C13—N2—H21122 (2)C12—C11—H11120.5
C13—N2—H22121 (2)N1—C12—C11123.2 (2)
H21—N2—H22116 (3)N1—C12—H12118.4
O1—C1—O2123.5 (2)C11—C12—H12118.4
O1—C1—C2118.07 (19)O4—C13—N2123.2 (2)
O2—C1—C2118.38 (19)O4—C13—C10119.00 (19)
C3—C2—C1119.43 (19)N2—C13—C10117.83 (19)
C7—C2—C1120.39 (19)
O5—Co1—N1—C8−130.62 (16)C1—C2—C7—C6−179.56 (19)
O5i—Co1—N1—C849.38 (16)C3—C2—C7—C60.2 (3)
O5—Co1—N1—C1249.21 (16)O3—C4—C3—C2177.66 (19)
O5i—Co1—N1—C12−130.79 (16)C5—C4—C3—C2−1.5 (3)
O6—Co1—N1—C8136.06 (16)C6—C5—C4—O3−178.4 (2)
O6i—Co1—N1—C8−43.94 (16)C6—C5—C4—C30.7 (3)
O6—Co1—N1—C12−44.12 (16)C4—C5—C6—C70.5 (3)
O6i—Co1—N1—C12135.88 (16)C2—C7—C6—C5−1.0 (3)
Co1—N1—C8—C9179.20 (16)N1—C8—C9—C100.8 (3)
C12—N1—C8—C9−0.6 (3)C8—C9—C10—C11−0.4 (3)
Co1—N1—C12—C11−179.88 (16)C8—C9—C10—C13178.98 (19)
C8—N1—C12—C110.0 (3)C12—C11—C10—C9−0.3 (3)
C3—C2—C1—O1−8.0 (3)C12—C11—C10—C13−179.57 (19)
C3—C2—C1—O2171.26 (19)C10—C11—C12—N10.5 (3)
C7—C2—C1—O1171.73 (19)O4—C13—C10—C95.0 (3)
C7—C2—C1—O2−9.0 (3)O4—C13—C10—C11−175.7 (2)
C1—C2—C3—C4−179.20 (19)N2—C13—C10—C9−174.3 (2)
C7—C2—C3—C41.1 (3)N2—C13—C10—C115.0 (3)
D—H···AD—HH···AD···AD—H···A
N2—H21···O2ii0.86 (3)2.18 (3)3.031 (3)170 (3)
N2—H22···O8iii0.85 (4)2.20 (4)3.007 (3)158 (3)
O3—H31···O70.91 (4)1.81 (4)2.711 (2)170 (4)
O5—H51···O3iii0.96 (3)1.76 (3)2.715 (2)171 (3)
O5—H52···O2i0.86 (3)1.95 (4)2.782 (2)163 (4)
O6—H61···O4iv0.95 (3)1.73 (3)2.685 (2)178 (4)
O6—H62···O2v0.82 (3)1.89 (4)2.683 (2)161 (3)
O7—H71···O1ii0.98 (3)1.76 (4)2.740 (3)179 (3)
O8—H81···O10.96 (4)1.81 (4)2.760 (3)174 (3)
O8—H82···O7vi0.83 (5)2.06 (4)2.807 (3)149 (5)
Table 1

Hydrogen-bond geometry (Å, °)

D—H⋯AD—HH⋯ADAD—H⋯A
N2—H21⋯O2i0.86 (3)2.18 (3)3.031 (3)170 (3)
N2—H22⋯O8ii0.85 (4)2.20 (4)3.007 (3)158 (3)
O3—H31⋯O70.91 (4)1.81 (4)2.711 (2)170 (4)
O5—H51⋯O3ii0.96 (3)1.76 (3)2.715 (2)171 (3)
O5—H52⋯O2iii0.86 (3)1.95 (4)2.782 (2)163 (4)
O6—H61⋯O4iv0.95 (3)1.73 (3)2.685 (2)178 (4)
O6—H62⋯O2v0.82 (3)1.89 (4)2.683 (2)161 (3)
O7—H71⋯O1i0.98 (3)1.76 (4)2.740 (3)179 (3)
O8—H81⋯O10.96 (4)1.81 (4)2.760 (3)174 (3)
O8—H82⋯O7vi0.83 (5)2.06 (4)2.807 (3)149 (5)

Symmetry codes: (i) ; (ii) ; (iii) ; (iv) ; (v) ; (vi) .

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