Literature DB >> 21580476

Diaqua-bis(4-methyl-benzoato-κO)bis-(nicotinamide-κN)nickel(II).

Hacali Necefoğlu, Efdal Cimen, Barış Tercan, Emel Ermiş, Tuncer Hökelek.   

Abstract

The title Ni(II) complex, [Ni(C(8)H(7)O(2))(2)(C(6)H(6)N(2)O)(2)(H(2)O)(2)], is centrosymmetric with the Ni atom located on an inversion center. The mol-ecule contains two 4-methyl-benzoate (PMB) and two nicotinamide (NA) ligands and two coordinated water mol-ecules, all ligands being monodentate. The four O atoms in the equatorial plane around the Ni atom form a slightly distorted square-planar arrangement, while the slightly distorted octa-hedral coordination is completed by the two N atoms of the NA ligands in the axial positions. The dihedral angle between the carboxyl-ate group and the adjacent benzene ring is 26.15 (10)°, while the pyridine and benzene rings are oriented at a dihedral angle of 87.81 (4)°. In the crystal structure, inter-molecular O-H⋯O and N-H⋯O hydrogen bonds link the mol-ecules into a three-dimensional network. The π-π contact between the benzene rings [centroid-centroid distance = 3.896 (1) Å] may further stabilize the crystal structure. A weak C-H⋯π inter-action involving the pyridine ring also occurs.

Entities:  

Year:  2010        PMID: 21580476      PMCID: PMC2984063          DOI: 10.1107/S1600536810007385

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For niacin, see: Krishnamachari (1974 ▶) and for the nicotinic acid derivative N,N-diethyl­nicotinamide, see: Bigoli et al. (1972 ▶). For related structures, see: Hökelek et al. (1996 ▶, 2009a ▶,b ▶,c ▶); Hökelek & Necefoğlu (1998 ▶).

Experimental

Crystal data

[Ni(C8H7O2)2(C6H6N2O)2(H2O)2] M = 609.26 Triclinic, a = 7.7324 (2) Å b = 9.7335 (3) Å c = 9.8198 (3) Å α = 78.440 (2)° β = 86.475 (3)° γ = 71.662 (2)° V = 687.31 (4) Å3 Z = 1 Mo Kα radiation μ = 0.76 mm−1 T = 99 K 0.33 × 0.28 × 0.25 mm

Data collection

Bruker Kappa APEXII CCD area-detector diffractometer Absorption correction: multi-scan (SADABS; Bruker, 2005 ▶) T min = 0.889, T max = 0.934 12002 measured reflections 3390 independent reflections 3034 reflections with I > 2σ(I) R int = 0.024

Refinement

R[F 2 > 2σ(F 2)] = 0.030 wR(F 2) = 0.068 S = 1.05 3390 reflections 204 parameters H atoms treated by a mixture of independent and constrained refinement Δρmax = 0.48 e Å−3 Δρmin = −0.50 e Å−3 Data collection: APEX2 (Bruker, 2007 ▶); cell refinement: SAINT (Bruker, 2007 ▶); data reduction: SAINT; program(s) used to solve structure: SHELXS97 (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: ORTEP-3 for Windows (Farrugia, 1997 ▶); software used to prepare material for publication: WinGX (Farrugia, 1999 ▶) and PLATON (Spek, 2009 ▶). Crystal structure: contains datablocks I, global. DOI: 10.1107/S1600536810007385/xu2730sup1.cif Structure factors: contains datablocks I. DOI: 10.1107/S1600536810007385/xu2730Isup2.hkl Additional supplementary materials: crystallographic information; 3D view; checkCIF report
[Ni(C8H7O2)2(C6H6N2O)2(H2O)2]Z = 1
Mr = 609.26F(000) = 318
Triclinic, P1Dx = 1.472 Mg m3
Hall symbol: -P 1Mo Kα radiation, λ = 0.71073 Å
a = 7.7324 (2) ÅCell parameters from 6458 reflections
b = 9.7335 (3) Åθ = 2.8–28.3°
c = 9.8198 (3) ŵ = 0.76 mm1
α = 78.440 (2)°T = 99 K
β = 86.475 (3)°Prism, blue
γ = 71.662 (2)°0.33 × 0.28 × 0.25 mm
V = 687.31 (4) Å3
Bruker Kappa APEXII CCD area-detector diffractometer3390 independent reflections
Radiation source: fine-focus sealed tube3034 reflections with I > 2σ(I)
graphiteRint = 0.024
φ and ω scansθmax = 28.4°, θmin = 2.1°
Absorption correction: multi-scan (SADABS; Bruker, 2005)h = −10→10
Tmin = 0.889, Tmax = 0.934k = −12→12
12002 measured reflectionsl = −12→13
Refinement on F2Primary atom site location: structure-invariant direct methods
Least-squares matrix: fullSecondary atom site location: difference Fourier map
R[F2 > 2σ(F2)] = 0.030Hydrogen site location: inferred from neighbouring sites
wR(F2) = 0.068H atoms treated by a mixture of independent and constrained refinement
S = 1.05w = 1/[σ2(Fo2) + (0.0238P)2 + 0.4565P] where P = (Fo2 + 2Fc2)/3
3390 reflections(Δ/σ)max < 0.001
204 parametersΔρmax = 0.48 e Å3
0 restraintsΔρmin = −0.50 e Å3
Geometry. All esds (except the esd in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell esds are taken into account individually in the estimation of esds in distances, angles and torsion angles; correlations between esds in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell esds is used for estimating esds involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/Ueq
Ni10.00000.00000.50000.00996 (8)
O10.12751 (13)0.01072 (11)0.67419 (11)0.0129 (2)
O2−0.11125 (14)0.15789 (11)0.77116 (11)0.0149 (2)
O30.44171 (14)0.33247 (11)0.48634 (12)0.0177 (2)
O40.25984 (15)−0.07089 (12)0.41538 (12)0.0136 (2)
H410.342 (3)−0.137 (2)0.458 (2)0.034 (6)*
H420.228 (3)−0.103 (2)0.345 (2)0.036 (6)*
N1−0.00159 (16)0.21391 (13)0.41144 (13)0.0116 (2)
N20.33786 (19)0.55995 (15)0.35530 (15)0.0176 (3)
H210.252 (3)0.628 (2)0.307 (2)0.022 (5)*
H220.425 (3)0.586 (2)0.390 (2)0.024 (5)*
C10.05766 (19)0.09453 (16)0.75988 (15)0.0120 (3)
C20.18258 (19)0.12691 (15)0.85126 (15)0.0121 (3)
C30.3601 (2)0.12032 (16)0.81040 (16)0.0139 (3)
H30.40700.08510.73020.017*
C40.4678 (2)0.16598 (16)0.88863 (16)0.0153 (3)
H40.58550.16240.85930.018*
C50.4019 (2)0.21690 (17)1.00998 (17)0.0162 (3)
C60.2262 (2)0.21841 (18)1.05279 (17)0.0192 (3)
H60.18160.24881.13560.023*
C70.1171 (2)0.17547 (17)0.97424 (16)0.0164 (3)
H7−0.00060.17901.00370.020*
C80.5187 (2)0.26752 (19)1.09414 (19)0.0239 (4)
H8A0.45560.36641.10630.036*
H8B0.63140.26511.04630.036*
H8C0.54350.20331.18340.036*
C9−0.13817 (19)0.31071 (16)0.33131 (16)0.0140 (3)
H9−0.23850.28230.31630.017*
C10−0.1356 (2)0.45107 (17)0.27015 (17)0.0169 (3)
H10−0.23260.51570.21530.020*
C110.0139 (2)0.49377 (16)0.29208 (16)0.0156 (3)
H110.01880.58750.25210.019*
C120.15612 (19)0.39452 (16)0.37462 (15)0.0121 (3)
C130.14248 (19)0.25568 (16)0.43189 (15)0.0115 (3)
H130.23780.18880.48690.014*
C140.32352 (19)0.42736 (16)0.40920 (16)0.0131 (3)
U11U22U33U12U13U23
Ni10.00972 (13)0.00810 (13)0.01255 (14)−0.00273 (10)−0.00152 (9)−0.00267 (10)
O10.0132 (5)0.0108 (5)0.0144 (5)−0.0023 (4)−0.0020 (4)−0.0036 (4)
O20.0120 (5)0.0152 (5)0.0175 (6)−0.0027 (4)−0.0015 (4)−0.0050 (4)
O30.0162 (5)0.0107 (5)0.0257 (6)−0.0035 (4)−0.0068 (4)−0.0016 (5)
O40.0114 (5)0.0124 (5)0.0163 (6)−0.0018 (4)−0.0020 (4)−0.0038 (5)
N10.0122 (6)0.0100 (6)0.0128 (6)−0.0029 (5)−0.0008 (5)−0.0035 (5)
N20.0172 (7)0.0113 (6)0.0254 (8)−0.0066 (5)−0.0074 (6)−0.0003 (6)
C10.0134 (7)0.0098 (7)0.0124 (7)−0.0044 (5)−0.0023 (5)0.0010 (5)
C20.0132 (7)0.0087 (6)0.0133 (7)−0.0021 (5)−0.0032 (5)−0.0007 (5)
C30.0157 (7)0.0130 (7)0.0124 (7)−0.0033 (6)−0.0010 (5)−0.0028 (6)
C40.0135 (7)0.0139 (7)0.0179 (8)−0.0040 (6)−0.0021 (6)−0.0014 (6)
C50.0180 (7)0.0116 (7)0.0182 (8)−0.0024 (6)−0.0062 (6)−0.0027 (6)
C60.0193 (8)0.0224 (8)0.0162 (8)−0.0028 (6)−0.0002 (6)−0.0101 (7)
C70.0132 (7)0.0185 (8)0.0167 (8)−0.0030 (6)−0.0003 (6)−0.0046 (6)
C80.0219 (8)0.0243 (9)0.0285 (10)−0.0062 (7)−0.0070 (7)−0.0111 (7)
C90.0116 (7)0.0140 (7)0.0173 (8)−0.0039 (6)−0.0022 (6)−0.0045 (6)
C100.0146 (7)0.0126 (7)0.0207 (8)−0.0008 (6)−0.0058 (6)−0.0003 (6)
C110.0173 (7)0.0092 (7)0.0199 (8)−0.0040 (6)−0.0024 (6)−0.0013 (6)
C120.0129 (7)0.0102 (7)0.0138 (7)−0.0028 (5)−0.0005 (5)−0.0050 (6)
C130.0122 (6)0.0103 (7)0.0120 (7)−0.0025 (5)−0.0019 (5)−0.0030 (5)
C140.0141 (7)0.0118 (7)0.0142 (7)−0.0032 (6)0.0000 (5)−0.0053 (6)
Ni1—O12.0621 (10)C4—C51.389 (2)
Ni1—O1i2.0621 (10)C4—H40.9300
Ni1—O4i2.0870 (10)C5—C61.394 (2)
Ni1—O42.0870 (10)C5—C81.509 (2)
Ni1—N12.0859 (12)C6—H60.9300
Ni1—N1i2.0859 (12)C7—C21.393 (2)
O1—C11.2678 (17)C7—C61.383 (2)
O2—C11.2654 (17)C7—H70.9300
O3—C141.2392 (18)C8—H8A0.9600
O4—H410.81 (2)C8—H8B0.9600
O4—H420.88 (2)C8—H8C0.9600
N1—C91.3421 (19)C9—C101.383 (2)
N1—C131.3386 (18)C9—H90.9300
N2—C141.3294 (19)C10—H100.9300
N2—H210.86 (2)C11—C101.388 (2)
N2—H220.89 (2)C11—H110.9300
C1—C21.500 (2)C12—C111.388 (2)
C2—C31.392 (2)C12—C131.390 (2)
C3—H30.9300C13—H130.9300
C4—C31.389 (2)C14—C121.500 (2)
O1i—Ni1—O1180.0C5—C4—C3120.87 (14)
O1—Ni1—O486.71 (4)C5—C4—H4119.6
O1i—Ni1—O493.29 (4)C4—C5—C6118.33 (14)
O1—Ni1—O4i93.29 (4)C4—C5—C8120.73 (14)
O1i—Ni1—O4i86.71 (4)C6—C5—C8120.93 (14)
O1—Ni1—N189.94 (4)C5—C6—H6119.4
O1i—Ni1—N190.06 (4)C7—C6—C5121.11 (14)
O1—Ni1—N1i90.06 (4)C7—C6—H6119.4
O1i—Ni1—N1i89.94 (4)C2—C7—H7119.8
O4i—Ni1—O4180.0C6—C7—C2120.34 (14)
N1—Ni1—O486.75 (4)C6—C7—H7119.8
N1i—Ni1—O493.25 (4)C5—C8—H8A109.5
N1—Ni1—O4i93.25 (4)C5—C8—H8B109.5
N1i—Ni1—O4i86.75 (4)C5—C8—H8C109.5
N1i—Ni1—N1180.0H8A—C8—H8B109.5
C1—O1—Ni1125.51 (9)H8A—C8—H8C109.5
Ni1—O4—H41122.0 (15)H8B—C8—H8C109.5
Ni1—O4—H4297.1 (14)N1—C9—C10122.60 (14)
H42—O4—H41108 (2)N1—C9—H9118.7
C9—N1—Ni1123.09 (10)C10—C9—H9118.7
C13—N1—Ni1118.67 (10)C9—C10—C11118.88 (14)
C13—N1—C9118.21 (12)C9—C10—H10120.6
C14—N2—H21122.3 (13)C11—C10—H10120.6
C14—N2—H22117.1 (12)C10—C11—C12119.04 (14)
H21—N2—H22118.3 (18)C10—C11—H11120.5
O1—C1—C2118.42 (13)C12—C11—H11120.5
O2—C1—O1124.67 (14)C11—C12—C13118.29 (13)
O2—C1—C2116.86 (13)C11—C12—C14124.54 (13)
C3—C2—C1121.08 (13)C13—C12—C14117.16 (13)
C3—C2—C7118.83 (14)N1—C13—C12122.98 (13)
C7—C2—C1119.91 (13)N1—C13—H13118.5
C2—C3—H3119.8C12—C13—H13118.5
C4—C3—C2120.46 (14)O3—C14—N2122.43 (14)
C4—C3—H3119.8O3—C14—C12119.86 (13)
C3—C4—H4119.6N2—C14—C12117.70 (13)
O4—Ni1—O1—C1153.43 (11)O2—C1—C2—C723.4 (2)
O4i—Ni1—O1—C1−26.57 (11)C1—C2—C3—C4172.95 (13)
N1—Ni1—O1—C166.68 (11)C7—C2—C3—C4−2.1 (2)
N1i—Ni1—O1—C1−113.32 (11)C5—C4—C3—C21.0 (2)
O1—Ni1—N1—C9−144.39 (11)C3—C4—C5—C61.2 (2)
O1i—Ni1—N1—C935.61 (11)C3—C4—C5—C8−179.53 (14)
O1—Ni1—N1—C1337.62 (11)C4—C5—C6—C7−2.3 (2)
O1i—Ni1—N1—C13−142.38 (11)C8—C5—C6—C7178.42 (15)
O4—Ni1—N1—C9128.90 (12)C6—C7—C2—C1−174.10 (14)
O4i—Ni1—N1—C9−51.10 (12)C6—C7—C2—C31.0 (2)
O4—Ni1—N1—C13−49.10 (11)C2—C7—C6—C51.2 (2)
O4i—Ni1—N1—C13130.90 (11)N1—C9—C10—C110.1 (2)
Ni1—O1—C1—O217.6 (2)C12—C11—C10—C90.0 (2)
Ni1—O1—C1—C2−159.77 (9)C13—C12—C11—C100.1 (2)
Ni1—N1—C9—C10−178.28 (11)C14—C12—C11—C10−178.64 (14)
C13—N1—C9—C10−0.3 (2)C11—C12—C13—N1−0.3 (2)
Ni1—N1—C13—C12178.46 (11)C14—C12—C13—N1178.56 (13)
C9—N1—C13—C120.4 (2)O3—C14—C12—C11178.48 (14)
O1—C1—C2—C326.1 (2)O3—C14—C12—C13−0.3 (2)
O1—C1—C2—C7−158.94 (14)N2—C14—C12—C11−1.1 (2)
O2—C1—C2—C3−151.54 (14)N2—C14—C12—C13−179.83 (13)
Cg2 is the centroid of the N1/C9–C13 ring.
D—H···AD—HH···AD···AD—H···A
N2—H21···O2ii0.86 (2)2.037 (19)2.8333 (18)153.4 (19)
N2—H22···O3iii0.90 (2)2.05 (2)2.9192 (19)161.5 (18)
O4—H41···O3iv0.81 (2)2.10 (2)2.8864 (16)162.9 (19)
O4—H42···O2i0.89 (2)1.75 (2)2.6240 (16)165 (2)
C6—H6···Cg2v0.932.653.5737 (18)171
Table 1

Selected bond lengths (Å)

Ni1—O12.0621 (10)
Ni1—O42.0870 (10)
Ni1—N12.0859 (12)
Table 2

Hydrogen-bond geometry (Å, °)

Cg2 is the centroid of the N1/C9–C13 ring.

D—H⋯AD—HH⋯ADAD—H⋯A
N2—H21⋯O2i0.86 (2)2.037 (19)2.8333 (18)153.4 (19)
N2—H22⋯O3ii0.90 (2)2.05 (2)2.9192 (19)161.5 (18)
O4—H41⋯O3iii0.81 (2)2.10 (2)2.8864 (16)162.9 (19)
O4—H42⋯O2iv0.89 (2)1.75 (2)2.6240 (16)165 (2)
C6—H6⋯Cg2v0.932.653.5737 (18)171

Symmetry codes: (i) ; (ii) ; (iii) ; (iv) ; (v) .

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3.  Diaqua-bis(2-chloro-benzoato-κO)bis-(N,N-diethyl-nicotinamide-κN)manganese(II).

Authors:  T Hökelek; H Dal; B Tercan; F E Ozbek; H Necefoğlu
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5.  Diaqua-bis(2-chloro-benzoato-κO)bis-(nicotinamide-κN)nickel(II).

Authors:  Tuncer Hökelek; Hakan Dal; Barış Tercan; F Elif Ozbek; Hacali Necefoğlu
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  8 in total

1.  Diaqua-bis(4-methyl-benzoato-κO)bis-(nicotinamide-κN)manganese(II).

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Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2010-04-10

2.  Diaqua-bis(N,N-diethyl-nicotinamide-κN)bis-(4-methyl-benzoato-κO)cobalt(II).

Authors:  Hacali Necefoğlu; Efdal Cimen; Barış Tercan; Emel Ermiş; Tuncer Hökelek
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2010-04-21

3.  Tetra-aqua-bis[4-(methyl-amino)benzoato-κO]nickel(II).

Authors:  Hacali Necefoğlu; Ozgür Aybirdi; Barış Tercan; Yasemin Süzen; Tuncer Hökelek
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2010-04-28

4.  Diaqua-bis-(4-meth-oxy-benzoato-κO)bis-(nicotinamide-κN)cobalt(II) dihydrate.

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Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2010-07-10

5.  Bis(isonicotinamide-κN)bis-(4-methyl-benzoato-κO)copper(II) dihydrate.

Authors:  Tuncer Hökelek; Güner Saka; Barış Tercan; Efdal Cimen; Hacali Necefoğlu
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6.  Diaqua-bis-(4-meth-oxy-benzoato-κO)bis-(nicotinamide-κN)nickel(II) dihydrate.

Authors:  Tuncer Hökelek; Hakan Dal; Barış Tercan; Erdinç Tenlik; Hacali Necefoğlu
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2010-07-07

7.  Diaqua-bis-[4-(dimethyl-amino)-benzoato-κO]bis-(nicotinamide-κN)zinc(II) dihydrate.

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8.  Crystal structure and Hirshfeld surface analysis of di-aqua-bis-(isonicotinamide-κN)bis-(2,4,6-tri-methyl-benzoato-κO1)nickel(II) dihydrate.

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