Literature DB >> 21583759

Diaqua-bis(2-chloro-benzoato-κO)bis-(N,N-diethyl-nicotinamide-κN)manganese(II).

T Hökelek, H Dal, B Tercan, F E Ozbek, H Necefoğlu.   

Abstract

In the monomeric title complex, [Mn(C(7)H(4)ClO(2))(2)(C(10)H(14)N(2)O)(2)(H(2)O)(2)], the Mn(II) atom is located on a crystallographic centre of inversion. The asymmetric unit contains one 2-chloro-benzoate (CB) ligand, one diethyl-nicotinamide (DENA) ligand and one coordinated water mol-ecule, all ligands being monodentate. The four O atoms in the equatorial plane around the Mn atom form a slightly distorted square-planar arrangement, while the slightly distorted octa-hedral coordination is completed by the two pyridine N atoms of the DENA ligands in the axial positions. The dihedral angle between the carboxyl group and the adjacent benzene ring is 77.9 (11)°, while the pyridine and benzene rings are oriented at a dihedral angle of 45.94 (5)°. In the crystal structure, inter-molecular O-H⋯O hydrogen bonds link the mol-ecules into infinite chains.

Entities:  

Year:  2009        PMID: 21583759      PMCID: PMC2977573          DOI: 10.1107/S160053680901318X

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For general backgroud to transition metal complexes with biochemically active ligands, see: Antolini et al. (1982 ▶); Bigoli et al. (1972 ▶); Nadzhafov et al. (1981 ▶); Shnulin et al. (1981 ▶). For related structures, see: Hökelek et al. (1995 ▶, 1997 ▶, 2007 ▶, 2008 ▶); Hökelek & Necefoğlu (1996 ▶, 1997 ▶, 2007 ▶).

Experimental

Crystal data

[Mn(C7H4ClO2)2(C10H14N2O)2(n class="Chemical">H2O)2] M = 758.54 Monoclinic, a = 13.2840 (2) Å b = 10.2499 (3) Å c = 15.0023 (4) Å β = 114.988 (1)° V = 1851.50 (8) Å3 Z = 2 Mo Kα radiation μ = 0.55 mm−1 T = 100 K 0.46 × 0.44 × 0.27 mm

Data collection

Bruker Kappa APEXII CCD area-detector diffractometer Absorption correction: multi-scan (SADABS; Bruker, 2005 ▶) T min = 0.778, T max = 0.864 16951 measured reflections 4635 independent reflections 3984 reflections with I > 2σ(I) R int = 0.048

Refinement

R[F 2 > 2σ(F 2)] = 0.033 wR(F 2) = 0.091 S = 1.07 4635 reflections 233 parameters 3 restraints H atoms treated by a mixture of independent and constrained refinement Δρmax = 1.17 e Å−3 Δρmin = −0.38 e Å−3 Data collection: APEX2 (Bruker, 2007 ▶); cell refinement: SAINT (Bruker, 2007 ▶); data reduction: SAINT; program(s) used to solve structure: SHELXS97 (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: ORTEP-3 for Windows (Farrugia, 1997 ▶); software used to prepare material for publication: WinGX (Farrugia, 1999 ▶). Crystal structure: contains datablocks I, global. DOI: 10.1107/S160053680901318X/im2110sup1.cif Structure factors: contains datablocks I. DOI: 10.1107/S160053680901318X/im2110Isup2.hkl Additional supplementary materials: crystallographic information; 3D view; checkCIF report
[Mn(C7H4ClO2)2(C10H14N2O)2(H2O)2]F(000) = 790
Mr = 758.54Dx = 1.361 Mg m3
Monoclinic, P21/nMo Kα radiation, λ = 0.71073 Å
Hall symbol: -P 2ynCell parameters from 8796 reflections
a = 13.2840 (2) Åθ = 2.5–28.4°
b = 10.2499 (3) ŵ = 0.55 mm1
c = 15.0023 (4) ÅT = 100 K
β = 114.988 (1)°Block, colorless
V = 1851.50 (8) Å30.46 × 0.44 × 0.27 mm
Z = 2
Bruker Kappa APEXII CCD area-detector diffractometer4635 independent reflections
Radiation source: fine-focus sealed tube3984 reflections with I > 2σ(I)
graphiteRint = 0.048
φ and ω scansθmax = 28.4°, θmin = 1.7°
Absorption correction: multi-scan (SADABS; Bruker, 2005)h = −17→17
Tmin = 0.778, Tmax = 0.864k = −13→13
16951 measured reflectionsl = −18→20
Refinement on F2Primary atom site location: structure-invariant direct methods
Least-squares matrix: fullSecondary atom site location: difference Fourier map
R[F2 > 2σ(F2)] = 0.033Hydrogen site location: inferred from neighbouring sites
wR(F2) = 0.091H atoms treated by a mixture of independent and constrained refinement
S = 1.07w = 1/[σ2(Fo2) + (0.0439P)2 + 0.6941P] where P = (Fo2 + 2Fc2)/3
4635 reflections(Δ/σ)max < 0.001
233 parametersΔρmax = 1.17 e Å3
3 restraintsΔρmin = −0.38 e Å3
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/Ueq
Mn10.50000.00000.00000.01025 (9)
Cl10.18512 (4)−0.13983 (4)0.08159 (3)0.02988 (11)
O10.46966 (9)−0.04216 (10)0.12506 (7)0.0170 (2)
O20.35458 (12)0.11652 (11)0.12485 (10)0.0316 (3)
O30.93810 (8)0.11259 (9)0.39721 (7)0.0163 (2)
O40.61938 (8)−0.16212 (10)0.03910 (7)0.0146 (2)
H410.634 (2)−0.173 (2)−0.0135 (13)0.053 (7)*
H420.6079 (18)−0.2422 (16)0.0558 (15)0.038 (6)*
N10.64747 (10)0.13022 (11)0.09437 (8)0.0142 (2)
N20.98935 (11)0.00083 (12)0.29330 (9)0.0175 (3)
C10.40228 (12)0.01065 (14)0.15298 (10)0.0158 (3)
C20.38071 (12)−0.06704 (14)0.22885 (10)0.0168 (3)
C30.45941 (14)−0.07053 (16)0.32641 (11)0.0230 (3)
H30.5231−0.01960.34590.028*
C40.44378 (15)−0.14936 (17)0.39502 (12)0.0274 (4)
H40.4965−0.15050.46000.033*
C50.34943 (15)−0.22608 (17)0.36617 (13)0.0279 (4)
H50.3396−0.28000.41170.033*
C60.26970 (15)−0.22309 (16)0.26997 (12)0.0247 (3)
H60.2061−0.27420.25060.030*
C70.28603 (13)−0.14272 (15)0.20293 (11)0.0198 (3)
C80.64781 (12)0.26020 (14)0.08373 (10)0.0161 (3)
H80.58670.29940.03400.019*
C90.73522 (12)0.33862 (14)0.14366 (10)0.0167 (3)
H90.73240.42840.13400.020*
C100.82671 (12)0.28205 (13)0.21802 (10)0.0150 (3)
H100.88560.33290.26010.018*
C110.82833 (11)0.14699 (13)0.22827 (10)0.0136 (3)
C120.73728 (12)0.07548 (14)0.16547 (10)0.0146 (3)
H120.7385−0.01470.17300.017*
C130.92349 (11)0.08431 (13)0.31200 (10)0.0134 (3)
C140.98096 (15)−0.03017 (19)0.19502 (12)0.0299 (4)
H14A1.0537−0.02180.19510.036*
H14B0.93200.03230.14820.036*
C150.93702 (17)−0.1674 (2)0.16204 (15)0.0459 (6)
H15A0.9385−0.18570.09980.069*
H15B0.8621−0.17370.15550.069*
H15C0.9828−0.22940.21000.069*
C161.08576 (12)−0.05400 (15)0.37696 (11)0.0192 (3)
H16A1.1004−0.14140.36060.023*
H16B1.0688−0.06010.43370.023*
C171.18844 (14)0.02997 (17)0.40244 (12)0.0259 (4)
H17A1.2498−0.00800.45700.039*
H17B1.17450.11610.41980.039*
H17C1.20590.03500.34660.039*
U11U22U33U12U13U23
Mn10.01013 (14)0.01034 (14)0.00924 (14)−0.00008 (10)0.00310 (11)0.00017 (10)
Cl10.0296 (2)0.0346 (2)0.0235 (2)−0.00607 (17)0.00939 (16)−0.00069 (15)
O10.0177 (5)0.0201 (5)0.0156 (5)0.0057 (4)0.0093 (4)0.0049 (4)
O20.0518 (8)0.0195 (6)0.0413 (7)0.0159 (5)0.0369 (7)0.0131 (5)
O30.0187 (5)0.0141 (5)0.0116 (5)0.0021 (4)0.0019 (4)−0.0019 (4)
O40.0170 (5)0.0107 (5)0.0161 (5)0.0004 (4)0.0068 (4)0.0007 (4)
N10.0140 (6)0.0132 (6)0.0127 (5)−0.0008 (4)0.0030 (5)0.0004 (4)
N20.0168 (6)0.0199 (6)0.0127 (6)0.0039 (5)0.0031 (5)−0.0002 (4)
C10.0193 (7)0.0144 (7)0.0163 (7)−0.0006 (5)0.0099 (6)−0.0003 (5)
C20.0211 (7)0.0145 (7)0.0197 (7)0.0043 (6)0.0135 (6)0.0028 (5)
C30.0220 (8)0.0259 (8)0.0227 (8)0.0017 (6)0.0111 (6)0.0043 (6)
C40.0296 (9)0.0337 (9)0.0204 (8)0.0064 (7)0.0121 (7)0.0087 (6)
C50.0381 (10)0.0270 (9)0.0276 (8)0.0046 (7)0.0226 (8)0.0100 (7)
C60.0293 (9)0.0221 (8)0.0303 (8)−0.0027 (7)0.0198 (7)0.0022 (6)
C70.0242 (8)0.0198 (7)0.0191 (7)0.0017 (6)0.0125 (6)0.0006 (5)
C80.0147 (6)0.0157 (7)0.0142 (6)0.0016 (5)0.0025 (5)0.0023 (5)
C90.0196 (7)0.0111 (6)0.0166 (7)−0.0005 (5)0.0050 (6)0.0010 (5)
C100.0150 (6)0.0141 (7)0.0134 (6)−0.0028 (5)0.0035 (5)−0.0020 (5)
C110.0136 (6)0.0147 (6)0.0102 (6)0.0008 (5)0.0029 (5)0.0001 (5)
C120.0155 (6)0.0120 (6)0.0132 (6)−0.0001 (5)0.0031 (5)0.0002 (5)
C130.0125 (6)0.0099 (6)0.0140 (6)−0.0027 (5)0.0018 (5)−0.0001 (5)
C140.0262 (9)0.0466 (11)0.0154 (7)0.0147 (8)0.0072 (6)−0.0029 (7)
C150.0322 (10)0.0573 (13)0.0357 (10)0.0100 (9)0.0022 (8)−0.0289 (9)
C160.0181 (7)0.0180 (7)0.0174 (7)0.0069 (6)0.0037 (6)0.0022 (5)
C170.0189 (8)0.0314 (9)0.0235 (8)0.0012 (7)0.0051 (6)−0.0036 (6)
Mn1—O12.1233 (10)C6—H60.9300
Mn1—O1i2.1233 (10)C7—C21.386 (2)
Mn1—O4i2.1987 (10)C7—C61.386 (2)
Mn1—O42.1987 (10)C8—C91.3859 (19)
Mn1—N1i2.2980 (12)C8—H80.9300
Mn1—N12.2980 (12)C9—C101.3828 (19)
Cl1—C71.7464 (16)C9—H90.9300
O1—C11.2595 (18)C10—H100.9300
O2—C11.2375 (18)C11—C101.3920 (19)
O3—C131.2435 (17)C11—C121.3875 (19)
O4—H410.896 (12)C12—H120.9300
O4—H420.890 (15)C13—C111.4991 (18)
N1—C81.3420 (18)C14—C151.523 (3)
N1—C121.3419 (17)C14—H14A0.9700
N2—C131.3355 (19)C14—H14B0.9700
N2—C141.466 (2)C15—H15A0.9600
N2—C161.4742 (18)C15—H15B0.9600
C2—C11.512 (2)C15—H15C0.9600
C2—C31.394 (2)C16—C171.519 (2)
C3—C41.392 (2)C16—H16A0.9700
C3—H30.9300C16—H16B0.9700
C4—C51.385 (3)C17—H17A0.9600
C4—H40.9300C17—H17B0.9600
C5—H50.9300C17—H17C0.9600
C6—C51.384 (2)
O1—Mn1—O1i180.00 (8)C6—C7—Cl1118.68 (13)
O1—Mn1—O4i90.28 (4)C6—C7—C2122.05 (15)
O1i—Mn1—O4i89.72 (4)N1—C8—C9122.86 (13)
O1—Mn1—O489.72 (4)N1—C8—H8118.6
O1i—Mn1—O490.28 (4)C9—C8—H8118.6
O1—Mn1—N1i89.75 (4)C8—C9—H9120.3
O1i—Mn1—N1i90.25 (4)C10—C9—C8119.35 (13)
O1—Mn1—N190.25 (4)C10—C9—H9120.3
O1i—Mn1—N189.75 (4)C9—C10—C11118.26 (13)
O4i—Mn1—O4180.00 (6)C9—C10—H10120.9
O4i—Mn1—N1i86.76 (4)C11—C10—H10120.9
O4—Mn1—N1i93.24 (4)C12—C11—C10118.82 (13)
O4i—Mn1—N193.24 (4)C12—C11—C13121.82 (12)
O4—Mn1—N186.76 (4)C10—C11—C13119.15 (12)
N1i—Mn1—N1180.00 (10)N1—C12—C11123.10 (13)
Mn1—O4—H41105.2 (15)N1—C12—H12118.5
Mn1—O4—H42125.6 (14)C11—C12—H12118.5
H41—O4—H42105.1 (19)O3—C13—N2122.25 (12)
C1—O1—Mn1129.29 (9)O3—C13—C11118.14 (13)
C8—N1—Mn1123.24 (9)N2—C13—C11119.60 (12)
C12—N1—Mn1119.15 (9)N2—C14—C15112.51 (16)
C12—N1—C8117.59 (12)N2—C14—H14A109.1
C13—N2—C14124.89 (12)N2—C14—H14B109.1
C13—N2—C16118.42 (12)C15—C14—H14A109.1
C14—N2—C16116.32 (13)C15—C14—H14B109.1
O1—C1—C2114.28 (12)H14A—C14—H14B107.8
O2—C1—O1126.65 (14)C14—C15—H15A109.5
O2—C1—C2119.07 (13)C14—C15—H15B109.5
C3—C2—C1120.47 (14)C14—C15—H15C109.5
C7—C2—C1121.43 (13)H15A—C15—H15B109.5
C7—C2—C3117.99 (14)H15A—C15—H15C109.5
C2—C3—H3119.6H15B—C15—H15C109.5
C4—C3—C2120.76 (16)N2—C16—C17111.28 (13)
C4—C3—H3119.6N2—C16—H16A109.4
C3—C4—H4120.1N2—C16—H16B109.4
C5—C4—C3119.78 (15)C17—C16—H16A109.4
C5—C4—H4120.1C17—C16—H16B109.4
C4—C5—H5119.8H16A—C16—H16B108.0
C6—C5—C4120.42 (15)C16—C17—H17A109.5
C6—C5—H5119.8C16—C17—H17B109.5
C5—C6—C7118.98 (16)C16—C17—H17C109.5
C5—C6—H6120.5H17A—C17—H17B109.5
C7—C6—H6120.5H17A—C17—H17C109.5
C2—C7—Cl1119.26 (11)H17B—C17—H17C109.5
O1—Mn1—N1—C8−112.21 (12)C3—C2—C1—O175.74 (18)
O1i—Mn1—N1—C867.79 (12)C3—C2—C1—O2−104.05 (18)
O1—Mn1—N1—C1266.18 (11)C7—C2—C1—O1−100.36 (17)
O1i—Mn1—N1—C12−113.82 (11)C7—C2—C1—O279.85 (19)
O4i—Mn1—O1—C12.94 (12)C1—C2—C3—C4−175.23 (15)
O4—Mn1—O1—C1−177.06 (12)C7—C2—C3—C41.0 (2)
O4i—Mn1—N1—C8−21.92 (12)C2—C3—C4—C50.5 (3)
O4—Mn1—N1—C8158.08 (12)C3—C4—C5—C6−1.1 (3)
O4i—Mn1—N1—C12156.47 (11)C7—C6—C5—C40.3 (3)
O4—Mn1—N1—C12−23.53 (11)C6—C7—C2—C1174.34 (14)
N1i—Mn1—O1—C1−83.82 (12)C6—C7—C2—C3−1.8 (2)
N1—Mn1—O1—C196.18 (12)Cl1—C7—C2—C1−4.3 (2)
Mn1—O1—C1—O2−16.0 (2)Cl1—C7—C2—C3179.50 (12)
Mn1—O1—C1—C2164.20 (9)C2—C7—C6—C51.2 (2)
Mn1—N1—C8—C9177.23 (11)Cl1—C7—C6—C5179.86 (13)
C12—N1—C8—C9−1.2 (2)N1—C8—C9—C100.0 (2)
Mn1—N1—C12—C11−177.57 (11)C8—C9—C10—C111.5 (2)
C8—N1—C12—C110.9 (2)C12—C11—C10—C9−1.7 (2)
C14—N2—C13—O3−175.90 (15)C13—C11—C10—C9−176.41 (13)
C16—N2—C13—O3−3.2 (2)C10—C11—C12—N10.5 (2)
C14—N2—C13—C114.1 (2)C13—C11—C12—N1175.09 (13)
C16—N2—C13—C11176.82 (12)O3—C13—C11—C1062.17 (19)
C13—N2—C14—C15−108.92 (18)O3—C13—C11—C12−112.38 (16)
C16—N2—C14—C1578.20 (18)N2—C13—C11—C10−117.81 (15)
C13—N2—C16—C17−90.68 (17)N2—C13—C11—C1267.64 (19)
C14—N2—C16—C1782.69 (17)
D—H···AD—HH···AD···AD—H···A
O4—H41···O2i0.90 (2)1.83 (2)2.666 (2)154 (2)
O4—H42···O3ii0.89 (2)1.86 (2)2.729 (1)166 (2)
Table 1

Hydrogen-bond geometry (Å, °)

D—H⋯AD—HH⋯ADAD—H⋯A
O4—H41⋯O2i0.90 (2)1.83 (2)2.666 (2)154 (2)
O4—H42⋯O3ii0.89 (2)1.86 (2)2.729 (1)166 (2)

Symmetry codes: (i) ; (ii) .

  2 in total

1.  A short history of SHELX.

Authors:  George M Sheldrick
Journal:  Acta Crystallogr A       Date:  2007-12-21       Impact factor: 2.290

2.  Diaqua-bis(4-chloro-benzoato-κO)bis-(N,N-diethyl-nicotinamide-κN)manganese(II).

Authors:  Tuncer Hökelek; Nagihan Caylak; Hacali Necefoğlu
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2008-02-29
  2 in total
  10 in total

1.  Diaqua-bis(4-methyl-benzoato-κO)bis-(nicotinamide-κN)manganese(II).

Authors:  Hacali Necefoğlu; Efdal Cimen; Barış Tercan; Hakan Dal; Tuncer Hökelek
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2010-04-10

2.  Diaqua-bis(N,N-diethyl-nicotinamide-κN)bis-(4-methyl-benzoato-κO)cobalt(II).

Authors:  Hacali Necefoğlu; Efdal Cimen; Barış Tercan; Emel Ermiş; Tuncer Hökelek
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2010-04-21

3.  Diaqua-bis-(2-bromo-benzoato-κO)bis-(N,N-diethyl-nicotinamide-κN)cobalt(II).

Authors:  Tuncer Hökelek; Güner Saka; Barış Tercan; Füreya Elif Oztürkkan; Hacali Necefoğlu
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2010-08-18

4.  Diaqua-bis-(4-meth-oxy-benzoato-κO)bis-(nicotinamide-κN)cobalt(II) dihydrate.

Authors:  Tuncer Hökelek; Hakan Dal; Barış Tercan; Erdinç Tenlik; Hacali Necefoğlu
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2010-07-10

5.  Bis(isonicotinamide-κN)bis-(4-methyl-benzoato-κO)copper(II) dihydrate.

Authors:  Tuncer Hökelek; Güner Saka; Barış Tercan; Efdal Cimen; Hacali Necefoğlu
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2010-07-17

6.  Diaqua-bis-(4-meth-oxy-benzoato-κO)bis-(nicotinamide-κN)nickel(II) dihydrate.

Authors:  Tuncer Hökelek; Hakan Dal; Barış Tercan; Erdinç Tenlik; Hacali Necefoğlu
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2010-07-07

7.  Diaqua-bis(4-methyl-amino-benzoato-κO)bis-(nicotinamide-κN)cobalt(II).

Authors:  Hacali Necefoğlu; Ozgür Aybirdi; Barış Tercan; Emel Ermiş; Tuncer Hökelek
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2010-03-27

8.  Diaqua-bis(4-methyl-benzoato-κO)bis-(nicotinamide-κN)nickel(II).

Authors:  Hacali Necefoğlu; Efdal Cimen; Barış Tercan; Emel Ermiş; Tuncer Hökelek
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2010-03-03

9.  Diaqua-bis-[4-(dimethyl-amino)-benzoato-κO]bis-(nicotinamide-κN)zinc(II) dihydrate.

Authors:  Tuncer Hökelek; Ertuğrul Gazi Sağlam; Barış Tercan; Ozgür Aybirdi; Hacali Necefoğlu
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2010-11-24

10.  Crystal structure and Hirshfeld surface analysis of di-aqua-bis-(N,N-di-ethyl-nicotinamide-κN1)bis-(2,4,6-tri-methyl-benzoato-κO)manganese(II).

Authors:  Tuncer Hökelek; Safiye Özkaya; Hacali Necefoğlu
Journal:  Acta Crystallogr E Crystallogr Commun       Date:  2018-03-02
  10 in total

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