| Literature DB >> 21589309 |
Tuncer Hökelek, Ertuğrul Gazi Sağlam, Barış Tercan, Ozgür Aybirdi, Hacali Necefoğlu.
Abstract
In the centrosymmetric title structure, [Zn(C(9)H(10)NO(2))(2)(C(6)H(6)N(2)O)(2)(H(2)O)(2)]·2H(2)O, the Zn(II) cation, located on an inversion center, is coordinated by two 4-(methyl-amino)-benzoate anions, two nicotinamide ligands and two water mol-ecules in a slightly distorted octa-hedral geometry. The dihedral angle between the carboxyl-ate group and the attached benzene ring is 3.09 (9)°, while the pyridine and benzene rings are oriented at a dihedral angle of 77.10 (4)°. The uncoordinated water mol-ecule is linked to nicotinamide ligands by O-H⋯O hydrogen bonds. In the crystal, inter-molecular N-H⋯O, O-H⋯O and C-H⋯O hydrogen bonds link the mol-ecules into a three-dimensional network. A weak N-H⋯π inter-action also occurs.Entities:
Year: 2010 PMID: 21589309 PMCID: PMC3011468 DOI: 10.1107/S1600536810046854
Source DB: PubMed Journal: Acta Crystallogr Sect E Struct Rep Online ISSN: 1600-5368
| [Zn(C9H10NO2)2(C6H6N2O)2(H2O)2]·2H2O | |
| Triclinic, | |
| Hall symbol: -P 1 | Mo |
| Cell parameters from 7854 reflections | |
| θ = 2.6–28.4° | |
| µ = 0.84 mm−1 | |
| α = 76.141 (2)° | |
| β = 88.894 (3)° | Block, colorless |
| γ = 78.200 (2)° | 0.40 × 0.24 × 0.18 mm |
| Bruker Kappa APEXII CCD area-detector diffractometer | 3975 independent reflections |
| Radiation source: fine-focus sealed tube | 3725 reflections with |
| graphite | |
| φ and ω scans | θmax = 28.5°, θmin = 2.1° |
| Absorption correction: multi-scan ( | |
| 14586 measured reflections |
| Refinement on | Primary atom site location: structure-invariant direct methods |
| Least-squares matrix: full | Secondary atom site location: difference Fourier map |
| Hydrogen site location: inferred from neighbouring sites | |
| H atoms treated by a mixture of independent and constrained refinement | |
| 3975 reflections | (Δ/σ)max < 0.001 |
| 240 parameters | Δρmax = 0.32 e Å−3 |
| 0 restraints | Δρmin = −0.21 e Å−3 |
| Geometry. All esds (except the esd in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell esds are taken into account individually in the estimation of esds in distances, angles and torsion angles; correlations between esds in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell esds is used for estimating esds involving l.s. planes. |
| Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > 2sigma(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger. |
| Zn1 | 0.0000 | 0.0000 | 0.0000 | 0.02409 (7) | |
| O1 | 0.14766 (12) | −0.13955 (9) | 0.15299 (10) | 0.0301 (2) | |
| O2 | 0.01781 (15) | −0.12085 (10) | 0.34423 (11) | 0.0406 (3) | |
| O3 | 0.22843 (14) | 0.63006 (10) | −0.11818 (13) | 0.0428 (3) | |
| O4 | 0.16532 (13) | −0.08200 (11) | −0.14162 (11) | 0.0305 (2) | |
| H41 | 0.128 (3) | −0.035 (2) | −0.211 (2) | 0.057 (6)* | |
| H42 | 0.179 (3) | −0.165 (2) | −0.138 (2) | 0.052 (6)* | |
| O5 | −0.1009 (2) | −0.13619 (14) | 0.61334 (15) | 0.0543 (3) | |
| H51 | −0.070 (3) | −0.136 (3) | 0.533 (3) | 0.083 (9)* | |
| H52 | −0.086 (3) | −0.063 (3) | 0.628 (2) | 0.069 (7)* | |
| N1 | 0.15651 (14) | 0.15584 (11) | −0.00723 (11) | 0.0266 (2) | |
| N2 | 0.00655 (17) | 0.58552 (13) | −0.21424 (13) | 0.0355 (3) | |
| H21 | −0.027 (2) | 0.671 (2) | −0.2554 (18) | 0.040 (5)* | |
| H22 | −0.047 (2) | 0.529 (2) | −0.2306 (19) | 0.041 (5)* | |
| N3 | 0.45941 (17) | −0.75023 (13) | 0.50923 (14) | 0.0395 (3) | |
| C1 | 0.11626 (17) | −0.18927 (13) | 0.27526 (13) | 0.0272 (3) | |
| C2 | 0.20133 (16) | −0.33741 (13) | 0.33617 (13) | 0.0261 (3) | |
| C3 | 0.31531 (17) | −0.41206 (14) | 0.26313 (14) | 0.0314 (3) | |
| H3 | 0.3353 | −0.3688 | 0.1746 | 0.038* | |
| C4 | 0.39964 (18) | −0.54815 (15) | 0.31784 (15) | 0.0341 (3) | |
| H4 | 0.4749 | −0.5949 | 0.2659 | 0.041* | |
| C5 | 0.37268 (17) | −0.61713 (13) | 0.45193 (14) | 0.0300 (3) | |
| C6 | 0.2540 (2) | −0.54300 (15) | 0.52383 (15) | 0.0373 (3) | |
| H6 | 0.2304 | −0.5866 | 0.6114 | 0.045* | |
| C7 | 0.1715 (2) | −0.40668 (15) | 0.46724 (14) | 0.0347 (3) | |
| H7 | 0.0943 | −0.3600 | 0.5178 | 0.042* | |
| C8 | 0.5794 (3) | −0.82465 (18) | 0.4327 (2) | 0.0539 (5) | |
| H8A | 0.6301 | −0.9151 | 0.4886 | 0.081* | |
| H8B | 0.6640 | −0.7712 | 0.4028 | 0.081* | |
| H8C | 0.5241 | −0.8373 | 0.3557 | 0.081* | |
| C9 | 0.4290 (2) | −0.82016 (16) | 0.64594 (18) | 0.0481 (4) | |
| H9A | 0.5045 | −0.9100 | 0.6712 | 0.072* | |
| H9B | 0.3160 | −0.8336 | 0.6515 | 0.072* | |
| H9C | 0.4464 | −0.7633 | 0.7061 | 0.072* | |
| C10 | 0.10521 (16) | 0.29304 (13) | −0.06636 (13) | 0.0254 (2) | |
| H10 | −0.0026 | 0.3238 | −0.1040 | 0.030* | |
| C11 | 0.20513 (16) | 0.39157 (13) | −0.07418 (13) | 0.0255 (2) | |
| C12 | 0.36499 (18) | 0.34448 (15) | −0.01643 (16) | 0.0333 (3) | |
| H12 | 0.4347 | 0.4076 | −0.0181 | 0.040* | |
| C13 | 0.41990 (18) | 0.20295 (16) | 0.04360 (17) | 0.0384 (3) | |
| H13 | 0.5273 | 0.1692 | 0.0816 | 0.046* | |
| C14 | 0.31197 (18) | 0.11262 (14) | 0.04593 (15) | 0.0335 (3) | |
| H14 | 0.3491 | 0.0174 | 0.0863 | 0.040* | |
| C15 | 0.14646 (17) | 0.54593 (13) | −0.13868 (14) | 0.0290 (3) |
| Zn1 | 0.02776 (11) | 0.01681 (10) | 0.02584 (11) | −0.00591 (7) | −0.00232 (8) | −0.00020 (7) |
| O1 | 0.0319 (5) | 0.0245 (4) | 0.0288 (5) | −0.0056 (4) | −0.0030 (4) | 0.0035 (4) |
| O2 | 0.0583 (7) | 0.0255 (5) | 0.0311 (5) | 0.0038 (4) | 0.0011 (5) | −0.0040 (4) |
| O3 | 0.0468 (6) | 0.0225 (5) | 0.0621 (7) | −0.0132 (4) | 0.0022 (5) | −0.0111 (5) |
| O4 | 0.0348 (5) | 0.0206 (4) | 0.0342 (6) | −0.0030 (4) | −0.0019 (4) | −0.0046 (4) |
| O5 | 0.0850 (10) | 0.0309 (6) | 0.0437 (8) | −0.0101 (6) | −0.0006 (7) | −0.0043 (5) |
| N1 | 0.0290 (5) | 0.0203 (5) | 0.0297 (6) | −0.0068 (4) | −0.0013 (4) | −0.0029 (4) |
| N2 | 0.0466 (7) | 0.0213 (5) | 0.0367 (7) | −0.0077 (5) | −0.0003 (5) | −0.0024 (5) |
| N3 | 0.0471 (7) | 0.0252 (6) | 0.0382 (7) | 0.0033 (5) | −0.0064 (6) | −0.0005 (5) |
| C1 | 0.0325 (6) | 0.0206 (5) | 0.0275 (6) | −0.0065 (5) | −0.0063 (5) | −0.0023 (5) |
| C2 | 0.0303 (6) | 0.0206 (5) | 0.0255 (6) | −0.0049 (5) | −0.0032 (5) | −0.0017 (5) |
| C3 | 0.0349 (7) | 0.0297 (6) | 0.0254 (6) | −0.0046 (5) | 0.0014 (5) | −0.0003 (5) |
| C4 | 0.0359 (7) | 0.0300 (7) | 0.0316 (7) | 0.0012 (5) | 0.0029 (5) | −0.0050 (5) |
| C5 | 0.0329 (7) | 0.0224 (6) | 0.0320 (7) | −0.0036 (5) | −0.0062 (5) | −0.0025 (5) |
| C6 | 0.0497 (9) | 0.0280 (7) | 0.0263 (7) | −0.0015 (6) | 0.0031 (6) | 0.0030 (5) |
| C7 | 0.0440 (8) | 0.0270 (6) | 0.0273 (7) | 0.0007 (6) | 0.0048 (6) | −0.0023 (5) |
| C8 | 0.0595 (11) | 0.0315 (8) | 0.0609 (11) | 0.0102 (7) | −0.0030 (9) | −0.0085 (7) |
| C9 | 0.0647 (11) | 0.0267 (7) | 0.0436 (9) | −0.0036 (7) | −0.0102 (8) | 0.0054 (6) |
| C10 | 0.0279 (6) | 0.0217 (5) | 0.0267 (6) | −0.0062 (5) | 0.0004 (5) | −0.0050 (5) |
| C11 | 0.0320 (6) | 0.0212 (5) | 0.0254 (6) | −0.0085 (5) | 0.0062 (5) | −0.0076 (5) |
| C12 | 0.0322 (7) | 0.0300 (6) | 0.0423 (8) | −0.0145 (5) | 0.0037 (6) | −0.0110 (6) |
| C13 | 0.0299 (7) | 0.0349 (7) | 0.0494 (9) | −0.0081 (6) | −0.0076 (6) | −0.0067 (6) |
| C14 | 0.0325 (7) | 0.0240 (6) | 0.0409 (8) | −0.0053 (5) | −0.0053 (6) | −0.0016 (5) |
| C15 | 0.0373 (7) | 0.0209 (6) | 0.0304 (7) | −0.0086 (5) | 0.0107 (5) | −0.0078 (5) |
| Zn1—O1 | 2.0442 (9) | C3—C4 | 1.3795 (19) |
| Zn1—O1i | 2.0442 (9) | C3—H3 | 0.9300 |
| Zn1—O4 | 2.1503 (11) | C4—H4 | 0.9300 |
| Zn1—O4i | 2.1503 (11) | C5—C4 | 1.411 (2) |
| Zn1—N1 | 2.1963 (10) | C5—C6 | 1.403 (2) |
| Zn1—N1i | 2.1963 (10) | C6—H6 | 0.9300 |
| O1—C1 | 1.2691 (16) | C7—C6 | 1.3802 (19) |
| O2—C1 | 1.2624 (17) | C7—H7 | 0.9300 |
| O3—C15 | 1.2327 (17) | C8—H8A | 0.9600 |
| O4—H41 | 0.78 (2) | C8—H8B | 0.9600 |
| O4—H42 | 0.81 (2) | C8—H8C | 0.9600 |
| O5—H51 | 0.85 (3) | C9—H9A | 0.9600 |
| O5—H52 | 0.81 (3) | C9—H9B | 0.9600 |
| N1—C10 | 1.3402 (15) | C9—H9C | 0.9600 |
| N1—C14 | 1.3371 (17) | C10—C11 | 1.3900 (17) |
| N2—C15 | 1.3279 (19) | C10—H10 | 0.9300 |
| N2—H21 | 0.845 (19) | C11—C12 | 1.3871 (19) |
| N2—H22 | 0.829 (19) | C12—C13 | 1.382 (2) |
| N3—C5 | 1.3675 (17) | C12—H12 | 0.9300 |
| N3—C8 | 1.440 (2) | C13—H13 | 0.9300 |
| N3—C9 | 1.444 (2) | C14—C13 | 1.3816 (19) |
| C1—C2 | 1.4881 (17) | C14—H14 | 0.9300 |
| C2—C3 | 1.3911 (19) | C15—C11 | 1.5045 (17) |
| C2—C7 | 1.3923 (19) | ||
| O1i—Zn1—O1 | 180.00 (9) | C5—C4—H4 | 119.7 |
| O1—Zn1—O4 | 88.47 (4) | N3—C5—C4 | 121.30 (13) |
| O1i—Zn1—O4 | 91.53 (4) | N3—C5—C6 | 121.57 (13) |
| O1—Zn1—O4i | 91.53 (4) | C6—C5—C4 | 117.13 (12) |
| O1i—Zn1—O4i | 88.47 (4) | C5—C6—H6 | 119.4 |
| O1—Zn1—N1 | 90.96 (4) | C7—C6—C5 | 121.30 (13) |
| O1i—Zn1—N1 | 89.04 (4) | C7—C6—H6 | 119.4 |
| O1—Zn1—N1i | 89.04 (4) | C2—C7—H7 | 119.2 |
| O1i—Zn1—N1i | 90.96 (4) | C6—C7—C2 | 121.51 (14) |
| O4—Zn1—O4i | 180.00 (8) | C6—C7—H7 | 119.2 |
| O4—Zn1—N1 | 87.36 (4) | N3—C8—H8A | 109.5 |
| O4i—Zn1—N1 | 92.64 (4) | N3—C8—H8B | 109.5 |
| O4—Zn1—N1i | 92.64 (4) | N3—C8—H8C | 109.5 |
| O4i—Zn1—N1i | 87.36 (4) | H8A—C8—H8B | 109.5 |
| N1i—Zn1—N1 | 180.0 | H8A—C8—H8C | 109.5 |
| C1—O1—Zn1 | 130.87 (9) | H8B—C8—H8C | 109.5 |
| Zn1—O4—H41 | 102.7 (16) | N3—C9—H9A | 109.5 |
| Zn1—O4—H42 | 117.8 (15) | N3—C9—H9B | 109.5 |
| H42—O4—H41 | 113 (2) | N3—C9—H9C | 109.5 |
| H52—O5—H51 | 106 (2) | H9A—C9—H9B | 109.5 |
| C10—N1—Zn1 | 122.97 (8) | H9A—C9—H9C | 109.5 |
| C14—N1—Zn1 | 119.13 (8) | H9B—C9—H9C | 109.5 |
| C14—N1—C10 | 117.87 (11) | N1—C10—C11 | 123.24 (12) |
| C15—N2—H21 | 120.5 (12) | N1—C10—H10 | 118.4 |
| C15—N2—H22 | 123.3 (13) | C11—C10—H10 | 118.4 |
| H21—N2—H22 | 115.9 (17) | C10—C11—C15 | 123.17 (12) |
| C5—N3—C8 | 120.47 (14) | C12—C11—C10 | 117.79 (11) |
| C5—N3—C9 | 120.68 (14) | C12—C11—C15 | 119.02 (11) |
| C8—N3—C9 | 118.82 (13) | C11—C12—H12 | 120.3 |
| O1—C1—C2 | 116.26 (12) | C13—C12—C11 | 119.49 (12) |
| O2—C1—O1 | 123.66 (11) | C13—C12—H12 | 120.3 |
| O2—C1—C2 | 120.08 (12) | C12—C13—H13 | 120.7 |
| C3—C2—C1 | 120.65 (12) | C14—C13—C12 | 118.62 (13) |
| C3—C2—C7 | 117.35 (12) | C14—C13—H13 | 120.7 |
| C7—C2—C1 | 122.00 (12) | N1—C14—C13 | 122.98 (12) |
| C2—C3—H3 | 118.9 | N1—C14—H14 | 118.5 |
| C4—C3—C2 | 122.10 (13) | C13—C14—H14 | 118.5 |
| C4—C3—H3 | 118.9 | O3—C15—N2 | 122.89 (13) |
| C3—C4—C5 | 120.56 (13) | O3—C15—C11 | 119.01 (13) |
| C3—C4—H4 | 119.7 | N2—C15—C11 | 118.10 (12) |
| O4—Zn1—O1—C1 | −158.28 (11) | O1—C1—C2—C7 | −176.86 (13) |
| O4i—Zn1—O1—C1 | 21.72 (11) | O2—C1—C2—C3 | −177.34 (13) |
| N1—Zn1—O1—C1 | 114.39 (11) | O2—C1—C2—C7 | 2.4 (2) |
| N1i—Zn1—O1—C1 | −65.61 (11) | C1—C2—C3—C4 | 178.22 (13) |
| O1—Zn1—N1—C14 | 19.82 (11) | C7—C2—C3—C4 | −1.5 (2) |
| O1i—Zn1—N1—C14 | −160.18 (11) | C1—C2—C7—C6 | −178.48 (14) |
| O1—Zn1—N1—C10 | −162.18 (11) | C3—C2—C7—C6 | 1.3 (2) |
| O1i—Zn1—N1—C10 | 17.82 (11) | C2—C3—C4—C5 | −0.1 (2) |
| O4—Zn1—N1—C10 | 109.39 (11) | N3—C5—C4—C3 | −177.74 (14) |
| O4i—Zn1—N1—C10 | −70.61 (11) | C6—C5—C4—C3 | 1.9 (2) |
| O4—Zn1—N1—C14 | −68.60 (11) | N3—C5—C6—C7 | 177.47 (15) |
| O4i—Zn1—N1—C14 | 111.40 (11) | C4—C5—C6—C7 | −2.2 (2) |
| Zn1—O1—C1—O2 | −33.61 (19) | C2—C7—C6—C5 | 0.6 (2) |
| Zn1—O1—C1—C2 | 145.62 (9) | N1—C10—C11—C12 | −0.6 (2) |
| Zn1—N1—C10—C11 | −178.36 (9) | N1—C10—C11—C15 | −179.02 (12) |
| C14—N1—C10—C11 | −0.3 (2) | C10—C11—C12—C13 | 1.3 (2) |
| Zn1—N1—C14—C13 | 178.79 (12) | C15—C11—C12—C13 | 179.73 (14) |
| C10—N1—C14—C13 | 0.7 (2) | C11—C12—C13—C14 | −1.0 (2) |
| C8—N3—C5—C4 | −1.0 (2) | N1—C14—C13—C12 | 0.0 (3) |
| C8—N3—C5—C6 | 179.36 (15) | O3—C15—C11—C10 | 165.58 (13) |
| C9—N3—C5—C4 | −179.22 (15) | O3—C15—C11—C12 | −12.8 (2) |
| C9—N3—C5—C6 | 1.1 (2) | N2—C15—C11—C10 | −13.6 (2) |
| O1—C1—C2—C3 | 3.40 (18) | N2—C15—C11—C12 | 168.04 (13) |
| Cg1 is the centroid of the C2–C7 ring. |
| H··· | ||||
| N2—H21···O5ii | 0.85 (2) | 2.05 (2) | 2.8826 (19) | 169.3 (2) |
| O4—H41···O2iii | 0.78 (2) | 2.00 (2) | 2.7370 (16) | 159 (2) |
| O4—H42···O3iv | 0.81 (2) | 1.96 (2) | 2.7681 (15) | 175.1 (2) |
| O5—H51···O2 | 0.85 (3) | 2.02 (3) | 2.8732 (19) | 174 (3) |
| O5—H52···O2v | 0.81 (3) | 2.11 (3) | 2.9150 (18) | 173 (2) |
| C13—H13···O4vi | 0.93 | 2.52 | 3.4422 (19) | 170 |
| N2—H22···Cg1iii | 0.829 (19) | 2.79 (2) | 3.5200 (15) | 147.9 (2) |
Selected bond lengths (Å)
| Zn1—O1 | 2.0442 (9) |
| Zn1—O4 | 2.1503 (11) |
| Zn1—N1 | 2.1963 (10) |
Hydrogen-bond geometry (Å, °)
Cg1 is the centroid of the C2–C7 ring.
| H⋯ | ||||
|---|---|---|---|---|
| N2—H21⋯O5i | 0.85 (2) | 2.05 (2) | 2.8826 (19) | 169.3 (2) |
| O4—H41⋯O2ii | 0.78 (2) | 2.00 (2) | 2.7370 (16) | 159 (2) |
| O4—H42⋯O3iii | 0.81 (2) | 1.96 (2) | 2.7681 (15) | 175.1 (2) |
| O5—H51⋯O2 | 0.85 (3) | 2.02 (3) | 2.8732 (19) | 174 (3) |
| O5—H52⋯O2iv | 0.81 (3) | 2.11 (3) | 2.9150 (18) | 173 (2) |
| C13—H13⋯O4v | 0.93 | 2.52 | 3.4422 (19) | 170 |
| N2—H22⋯ | 0.829 (19) | 2.79 (2) | 3.5200 (15) | 147.9 (2) |
Symmetry codes: (i) ; (ii) ; (iii) ; (iv) ; (v) .