Literature DB >> 21589309

Diaqua-bis-[4-(dimethyl-amino)-benzoato-κO]bis-(nicotinamide-κN)zinc(II) dihydrate.

Tuncer Hökelek, Ertuğrul Gazi Sağlam, Barış Tercan, Ozgür Aybirdi, Hacali Necefoğlu.   

Abstract

In the centrosymmetric title structure, [Zn(C(9)H(10)NO(2))(2)(C(6)H(6)N(2)O)(2)(H(2)O)(2)]·2H(2)O, the Zn(II) cation, located on an inversion center, is coordinated by two 4-(methyl-amino)-benzoate anions, two nicotinamide ligands and two water mol-ecules in a slightly distorted octa-hedral geometry. The dihedral angle between the carboxyl-ate group and the attached benzene ring is 3.09 (9)°, while the pyridine and benzene rings are oriented at a dihedral angle of 77.10 (4)°. The uncoordinated water mol-ecule is linked to nicotinamide ligands by O-H⋯O hydrogen bonds. In the crystal, inter-molecular N-H⋯O, O-H⋯O and C-H⋯O hydrogen bonds link the mol-ecules into a three-dimensional network. A weak N-H⋯π inter-action also occurs.

Entities:  

Year:  2010        PMID: 21589309      PMCID: PMC3011468          DOI: 10.1107/S1600536810046854

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For niacin, see: Krishnamachari (1974 ▶). For N,N-diethyl­nicotinamide, see: Bigoli et al. (1972 ▶). For related structures, see: Hökelek et al. (1996 ▶, 2009a ▶,b ▶,c ▶); Hökelek & Necefoğlu (1998 ▶); Necefoğlu et al. (2010a ▶,b ▶).

Experimental

Crystal data

[Zn(C9H10NO2)2(C6H6N2O)2(H2O)2]·2H2O M = 710.07 Triclinic, a = 8.1810 (2) Å b = 9.9877 (2) Å c = 10.1982 (3) Å α = 76.141 (2)° β = 88.894 (3)° γ = 78.200 (2)° V = 791.55 (4) Å3 Z = 1 Mo Kα radiation μ = 0.84 mm−1 T = 100 K 0.40 × 0.24 × 0.18 mm

Data collection

Bruker Kappa APEXII CCD area-detector diffractometer Absorption correction: multi-scan (SADABS; Bruker, 2005 ▶) T min = 0.783, T max = 0.856 14586 measured reflections 3975 independent reflections 3725 reflections with I > 2σ(I) R int = 0.020

Refinement

R[F 2 > 2σ(F 2)] = 0.026 wR(F 2) = 0.068 S = 1.05 3975 reflections 240 parameters H atoms treated by a mixture of independent and constrained refinement Δρmax = 0.32 e Å−3 Δρmin = −0.21 e Å−3 Data collection: APEX2 (Bruker, 2007 ▶); cell refinement: SAINT (Bruker, 2007 ▶); data reduction: SAINT; program(s) used to solve structure: SHELXS97 (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: ORTEP-3 for Windows (Farrugia, 1997 ▶); software used to prepare material for publication: WinGX publication routines (Farrugia, 1999 ▶) and PLATON (Spek, 2009 ▶). Crystal structure: contains datablocks I, global. DOI: 10.1107/S1600536810046854/xu5088sup1.cif Structure factors: contains datablocks I. DOI: 10.1107/S1600536810046854/xu5088Isup2.hkl Additional supplementary materials: crystallographic information; 3D view; checkCIF report
[Zn(C9H10NO2)2(C6H6N2O)2(H2O)2]·2H2OZ = 1
Mr = 710.07F(000) = 372
Triclinic, P1Dx = 1.490 Mg m3
Hall symbol: -P 1Mo Kα radiation, λ = 0.71073 Å
a = 8.1810 (2) ÅCell parameters from 7854 reflections
b = 9.9877 (2) Åθ = 2.6–28.4°
c = 10.1982 (3) ŵ = 0.84 mm1
α = 76.141 (2)°T = 100 K
β = 88.894 (3)°Block, colorless
γ = 78.200 (2)°0.40 × 0.24 × 0.18 mm
V = 791.55 (4) Å3
Bruker Kappa APEXII CCD area-detector diffractometer3975 independent reflections
Radiation source: fine-focus sealed tube3725 reflections with I > 2σ(I)
graphiteRint = 0.020
φ and ω scansθmax = 28.5°, θmin = 2.1°
Absorption correction: multi-scan (SADABS; Bruker, 2005)h = −10→10
Tmin = 0.783, Tmax = 0.856k = −13→13
14586 measured reflectionsl = −13→13
Refinement on F2Primary atom site location: structure-invariant direct methods
Least-squares matrix: fullSecondary atom site location: difference Fourier map
R[F2 > 2σ(F2)] = 0.026Hydrogen site location: inferred from neighbouring sites
wR(F2) = 0.068H atoms treated by a mixture of independent and constrained refinement
S = 1.05w = 1/[σ2(Fo2) + (0.0322P)2 + 0.2491P] where P = (Fo2 + 2Fc2)/3
3975 reflections(Δ/σ)max < 0.001
240 parametersΔρmax = 0.32 e Å3
0 restraintsΔρmin = −0.21 e Å3
Geometry. All esds (except the esd in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell esds are taken into account individually in the estimation of esds in distances, angles and torsion angles; correlations between esds in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell esds is used for estimating esds involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > 2sigma(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/Ueq
Zn10.00000.00000.00000.02409 (7)
O10.14766 (12)−0.13955 (9)0.15299 (10)0.0301 (2)
O20.01781 (15)−0.12085 (10)0.34423 (11)0.0406 (3)
O30.22843 (14)0.63006 (10)−0.11818 (13)0.0428 (3)
O40.16532 (13)−0.08200 (11)−0.14162 (11)0.0305 (2)
H410.128 (3)−0.035 (2)−0.211 (2)0.057 (6)*
H420.179 (3)−0.165 (2)−0.138 (2)0.052 (6)*
O5−0.1009 (2)−0.13619 (14)0.61334 (15)0.0543 (3)
H51−0.070 (3)−0.136 (3)0.533 (3)0.083 (9)*
H52−0.086 (3)−0.063 (3)0.628 (2)0.069 (7)*
N10.15651 (14)0.15584 (11)−0.00723 (11)0.0266 (2)
N20.00655 (17)0.58552 (13)−0.21424 (13)0.0355 (3)
H21−0.027 (2)0.671 (2)−0.2554 (18)0.040 (5)*
H22−0.047 (2)0.529 (2)−0.2306 (19)0.041 (5)*
N30.45941 (17)−0.75023 (13)0.50923 (14)0.0395 (3)
C10.11626 (17)−0.18927 (13)0.27526 (13)0.0272 (3)
C20.20133 (16)−0.33741 (13)0.33617 (13)0.0261 (3)
C30.31531 (17)−0.41206 (14)0.26313 (14)0.0314 (3)
H30.3353−0.36880.17460.038*
C40.39964 (18)−0.54815 (15)0.31784 (15)0.0341 (3)
H40.4749−0.59490.26590.041*
C50.37268 (17)−0.61713 (13)0.45193 (14)0.0300 (3)
C60.2540 (2)−0.54300 (15)0.52383 (15)0.0373 (3)
H60.2304−0.58660.61140.045*
C70.1715 (2)−0.40668 (15)0.46724 (14)0.0347 (3)
H70.0943−0.36000.51780.042*
C80.5794 (3)−0.82465 (18)0.4327 (2)0.0539 (5)
H8A0.6301−0.91510.48860.081*
H8B0.6640−0.77120.40280.081*
H8C0.5241−0.83730.35570.081*
C90.4290 (2)−0.82016 (16)0.64594 (18)0.0481 (4)
H9A0.5045−0.91000.67120.072*
H9B0.3160−0.83360.65150.072*
H9C0.4464−0.76330.70610.072*
C100.10521 (16)0.29304 (13)−0.06636 (13)0.0254 (2)
H10−0.00260.3238−0.10400.030*
C110.20513 (16)0.39157 (13)−0.07418 (13)0.0255 (2)
C120.36499 (18)0.34448 (15)−0.01643 (16)0.0333 (3)
H120.43470.4076−0.01810.040*
C130.41990 (18)0.20295 (16)0.04360 (17)0.0384 (3)
H130.52730.16920.08160.046*
C140.31197 (18)0.11262 (14)0.04593 (15)0.0335 (3)
H140.34910.01740.08630.040*
C150.14646 (17)0.54593 (13)−0.13868 (14)0.0290 (3)
U11U22U33U12U13U23
Zn10.02776 (11)0.01681 (10)0.02584 (11)−0.00591 (7)−0.00232 (8)−0.00020 (7)
O10.0319 (5)0.0245 (4)0.0288 (5)−0.0056 (4)−0.0030 (4)0.0035 (4)
O20.0583 (7)0.0255 (5)0.0311 (5)0.0038 (4)0.0011 (5)−0.0040 (4)
O30.0468 (6)0.0225 (5)0.0621 (7)−0.0132 (4)0.0022 (5)−0.0111 (5)
O40.0348 (5)0.0206 (4)0.0342 (6)−0.0030 (4)−0.0019 (4)−0.0046 (4)
O50.0850 (10)0.0309 (6)0.0437 (8)−0.0101 (6)−0.0006 (7)−0.0043 (5)
N10.0290 (5)0.0203 (5)0.0297 (6)−0.0068 (4)−0.0013 (4)−0.0029 (4)
N20.0466 (7)0.0213 (5)0.0367 (7)−0.0077 (5)−0.0003 (5)−0.0024 (5)
N30.0471 (7)0.0252 (6)0.0382 (7)0.0033 (5)−0.0064 (6)−0.0005 (5)
C10.0325 (6)0.0206 (5)0.0275 (6)−0.0065 (5)−0.0063 (5)−0.0023 (5)
C20.0303 (6)0.0206 (5)0.0255 (6)−0.0049 (5)−0.0032 (5)−0.0017 (5)
C30.0349 (7)0.0297 (6)0.0254 (6)−0.0046 (5)0.0014 (5)−0.0003 (5)
C40.0359 (7)0.0300 (7)0.0316 (7)0.0012 (5)0.0029 (5)−0.0050 (5)
C50.0329 (7)0.0224 (6)0.0320 (7)−0.0036 (5)−0.0062 (5)−0.0025 (5)
C60.0497 (9)0.0280 (7)0.0263 (7)−0.0015 (6)0.0031 (6)0.0030 (5)
C70.0440 (8)0.0270 (6)0.0273 (7)0.0007 (6)0.0048 (6)−0.0023 (5)
C80.0595 (11)0.0315 (8)0.0609 (11)0.0102 (7)−0.0030 (9)−0.0085 (7)
C90.0647 (11)0.0267 (7)0.0436 (9)−0.0036 (7)−0.0102 (8)0.0054 (6)
C100.0279 (6)0.0217 (5)0.0267 (6)−0.0062 (5)0.0004 (5)−0.0050 (5)
C110.0320 (6)0.0212 (5)0.0254 (6)−0.0085 (5)0.0062 (5)−0.0076 (5)
C120.0322 (7)0.0300 (6)0.0423 (8)−0.0145 (5)0.0037 (6)−0.0110 (6)
C130.0299 (7)0.0349 (7)0.0494 (9)−0.0081 (6)−0.0076 (6)−0.0067 (6)
C140.0325 (7)0.0240 (6)0.0409 (8)−0.0053 (5)−0.0053 (6)−0.0016 (5)
C150.0373 (7)0.0209 (6)0.0304 (7)−0.0086 (5)0.0107 (5)−0.0078 (5)
Zn1—O12.0442 (9)C3—C41.3795 (19)
Zn1—O1i2.0442 (9)C3—H30.9300
Zn1—O42.1503 (11)C4—H40.9300
Zn1—O4i2.1503 (11)C5—C41.411 (2)
Zn1—N12.1963 (10)C5—C61.403 (2)
Zn1—N1i2.1963 (10)C6—H60.9300
O1—C11.2691 (16)C7—C61.3802 (19)
O2—C11.2624 (17)C7—H70.9300
O3—C151.2327 (17)C8—H8A0.9600
O4—H410.78 (2)C8—H8B0.9600
O4—H420.81 (2)C8—H8C0.9600
O5—H510.85 (3)C9—H9A0.9600
O5—H520.81 (3)C9—H9B0.9600
N1—C101.3402 (15)C9—H9C0.9600
N1—C141.3371 (17)C10—C111.3900 (17)
N2—C151.3279 (19)C10—H100.9300
N2—H210.845 (19)C11—C121.3871 (19)
N2—H220.829 (19)C12—C131.382 (2)
N3—C51.3675 (17)C12—H120.9300
N3—C81.440 (2)C13—H130.9300
N3—C91.444 (2)C14—C131.3816 (19)
C1—C21.4881 (17)C14—H140.9300
C2—C31.3911 (19)C15—C111.5045 (17)
C2—C71.3923 (19)
O1i—Zn1—O1180.00 (9)C5—C4—H4119.7
O1—Zn1—O488.47 (4)N3—C5—C4121.30 (13)
O1i—Zn1—O491.53 (4)N3—C5—C6121.57 (13)
O1—Zn1—O4i91.53 (4)C6—C5—C4117.13 (12)
O1i—Zn1—O4i88.47 (4)C5—C6—H6119.4
O1—Zn1—N190.96 (4)C7—C6—C5121.30 (13)
O1i—Zn1—N189.04 (4)C7—C6—H6119.4
O1—Zn1—N1i89.04 (4)C2—C7—H7119.2
O1i—Zn1—N1i90.96 (4)C6—C7—C2121.51 (14)
O4—Zn1—O4i180.00 (8)C6—C7—H7119.2
O4—Zn1—N187.36 (4)N3—C8—H8A109.5
O4i—Zn1—N192.64 (4)N3—C8—H8B109.5
O4—Zn1—N1i92.64 (4)N3—C8—H8C109.5
O4i—Zn1—N1i87.36 (4)H8A—C8—H8B109.5
N1i—Zn1—N1180.0H8A—C8—H8C109.5
C1—O1—Zn1130.87 (9)H8B—C8—H8C109.5
Zn1—O4—H41102.7 (16)N3—C9—H9A109.5
Zn1—O4—H42117.8 (15)N3—C9—H9B109.5
H42—O4—H41113 (2)N3—C9—H9C109.5
H52—O5—H51106 (2)H9A—C9—H9B109.5
C10—N1—Zn1122.97 (8)H9A—C9—H9C109.5
C14—N1—Zn1119.13 (8)H9B—C9—H9C109.5
C14—N1—C10117.87 (11)N1—C10—C11123.24 (12)
C15—N2—H21120.5 (12)N1—C10—H10118.4
C15—N2—H22123.3 (13)C11—C10—H10118.4
H21—N2—H22115.9 (17)C10—C11—C15123.17 (12)
C5—N3—C8120.47 (14)C12—C11—C10117.79 (11)
C5—N3—C9120.68 (14)C12—C11—C15119.02 (11)
C8—N3—C9118.82 (13)C11—C12—H12120.3
O1—C1—C2116.26 (12)C13—C12—C11119.49 (12)
O2—C1—O1123.66 (11)C13—C12—H12120.3
O2—C1—C2120.08 (12)C12—C13—H13120.7
C3—C2—C1120.65 (12)C14—C13—C12118.62 (13)
C3—C2—C7117.35 (12)C14—C13—H13120.7
C7—C2—C1122.00 (12)N1—C14—C13122.98 (12)
C2—C3—H3118.9N1—C14—H14118.5
C4—C3—C2122.10 (13)C13—C14—H14118.5
C4—C3—H3118.9O3—C15—N2122.89 (13)
C3—C4—C5120.56 (13)O3—C15—C11119.01 (13)
C3—C4—H4119.7N2—C15—C11118.10 (12)
O4—Zn1—O1—C1−158.28 (11)O1—C1—C2—C7−176.86 (13)
O4i—Zn1—O1—C121.72 (11)O2—C1—C2—C3−177.34 (13)
N1—Zn1—O1—C1114.39 (11)O2—C1—C2—C72.4 (2)
N1i—Zn1—O1—C1−65.61 (11)C1—C2—C3—C4178.22 (13)
O1—Zn1—N1—C1419.82 (11)C7—C2—C3—C4−1.5 (2)
O1i—Zn1—N1—C14−160.18 (11)C1—C2—C7—C6−178.48 (14)
O1—Zn1—N1—C10−162.18 (11)C3—C2—C7—C61.3 (2)
O1i—Zn1—N1—C1017.82 (11)C2—C3—C4—C5−0.1 (2)
O4—Zn1—N1—C10109.39 (11)N3—C5—C4—C3−177.74 (14)
O4i—Zn1—N1—C10−70.61 (11)C6—C5—C4—C31.9 (2)
O4—Zn1—N1—C14−68.60 (11)N3—C5—C6—C7177.47 (15)
O4i—Zn1—N1—C14111.40 (11)C4—C5—C6—C7−2.2 (2)
Zn1—O1—C1—O2−33.61 (19)C2—C7—C6—C50.6 (2)
Zn1—O1—C1—C2145.62 (9)N1—C10—C11—C12−0.6 (2)
Zn1—N1—C10—C11−178.36 (9)N1—C10—C11—C15−179.02 (12)
C14—N1—C10—C11−0.3 (2)C10—C11—C12—C131.3 (2)
Zn1—N1—C14—C13178.79 (12)C15—C11—C12—C13179.73 (14)
C10—N1—C14—C130.7 (2)C11—C12—C13—C14−1.0 (2)
C8—N3—C5—C4−1.0 (2)N1—C14—C13—C120.0 (3)
C8—N3—C5—C6179.36 (15)O3—C15—C11—C10165.58 (13)
C9—N3—C5—C4−179.22 (15)O3—C15—C11—C12−12.8 (2)
C9—N3—C5—C61.1 (2)N2—C15—C11—C10−13.6 (2)
O1—C1—C2—C33.40 (18)N2—C15—C11—C12168.04 (13)
Cg1 is the centroid of the C2–C7 ring.
D—H···AD—HH···AD···AD—H···A
N2—H21···O5ii0.85 (2)2.05 (2)2.8826 (19)169.3 (2)
O4—H41···O2iii0.78 (2)2.00 (2)2.7370 (16)159 (2)
O4—H42···O3iv0.81 (2)1.96 (2)2.7681 (15)175.1 (2)
O5—H51···O20.85 (3)2.02 (3)2.8732 (19)174 (3)
O5—H52···O2v0.81 (3)2.11 (3)2.9150 (18)173 (2)
C13—H13···O4vi0.932.523.4422 (19)170
N2—H22···Cg1iii0.829 (19)2.79 (2)3.5200 (15)147.9 (2)
Table 1

Selected bond lengths (Å)

Zn1—O12.0442 (9)
Zn1—O42.1503 (11)
Zn1—N12.1963 (10)
Table 2

Hydrogen-bond geometry (Å, °)

Cg1 is the centroid of the C2–C7 ring.

D—H⋯AD—HH⋯ADAD—H⋯A
N2—H21⋯O5i0.85 (2)2.05 (2)2.8826 (19)169.3 (2)
O4—H41⋯O2ii0.78 (2)2.00 (2)2.7370 (16)159 (2)
O4—H42⋯O3iii0.81 (2)1.96 (2)2.7681 (15)175.1 (2)
O5—H51⋯O20.85 (3)2.02 (3)2.8732 (19)174 (3)
O5—H52⋯O2iv0.81 (3)2.11 (3)2.9150 (18)173 (2)
C13—H13⋯O4v0.932.523.4422 (19)170
N2—H22⋯Cg1ii0.829 (19)2.79 (2)3.5200 (15)147.9 (2)

Symmetry codes: (i) ; (ii) ; (iii) ; (iv) ; (v) .

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