Literature DB >> 21588136

Diaqua-bis-(4-meth-oxy-benzoato-κO)bis-(nicotinamide-κN)nickel(II) dihydrate.

Tuncer Hökelek, Hakan Dal, Barış Tercan, Erdinç Tenlik, Hacali Necefoğlu.   

Abstract

In the mononuclear title compound, [Ni(C(8)H(7)O(3))(2)(C(6)H(6)N(2)O)(2)(H(2)O)(2)]·2H(2)O, the Ni(II) ion is located on a crystallographic inversion center. The asymmetric unit further contains one 4-meth-oxy-benzoate anion, one nicotinamide (NA) ligand and one coordinated and one uncoordinated water mol-ecule; all ligands are monodentate. The four O atoms in the equatorial plane around the Ni(II) ion form a slightly distorted square-planar arrangement, while the slightly distorted octa-hedral coordination is completed by the two pyridine N atoms of the NA ligands in the axial positions. The dihedral angle between the carboxyl-ate group and the attached benzene ring is 7.2 (1)°, while the pyridine and benzene rings are oriented at a dihedral angle of 72.80 (4)°. An intra-molecular O-H⋯O hydrogen bond links the uncoordinated water mol-ecule to one of the carboxyl-ate groups. In the crystal structure, inter-molecular O-H⋯O, N-H⋯O and C-H⋯O hydrogen bonds link the mol-ecules into a three-dimensional network.

Entities:  

Year:  2010        PMID: 21588136      PMCID: PMC3007542          DOI: 10.1107/S1600536810025985

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For niacin, see: Krishnamachari (1974 ▶). For N,N-diethyl­nicotinamide, see: Bigoli et al. (1972 ▶). For related structures, see: Hökelek et al. (1996 ▶, 2009a ▶,b ▶,c ▶); Hökelek & Necefoğlu (1998 ▶); Necefoğlu et al. (2010 ▶).

Experimental

Crystal data

[Ni(C8H7O3)2(C6H6N2O)2(H2O)2]·2H2O M = 677.28 Triclinic, a = 8.1279 (2) Å b = 9.7006 (2) Å c = 10.0636 (3) Å α = 101.637 (3)° β = 91.634 (2)° γ = 105.137 (3)° V = 747.42 (4) Å3 Z = 1 Mo Kα radiation μ = 0.72 mm−1 T = 100 K 0.35 × 0.26 × 0.19 mm

Data collection

Bruker Kappa APEXII CCD area-detector diffractometer Absorption correction: multi-scan (SADABS; Bruker, 2005 ▶) T min = 0.797, T max = 0.871 13749 measured reflections 3740 independent reflections 3454 reflections with I > 2σ(I) R int = 0.024

Refinement

R[F 2 > 2σ(F 2)] = 0.026 wR(F 2) = 0.067 S = 1.04 3740 reflections 228 parameters H atoms treated by a mixture of independent and constrained refinement Δρmax = 0.41 e Å−3 Δρmin = −0.32 e Å−3 Data collection: APEX2 (Bruker, 2007 ▶); cell refinement: SAINT (Bruker, 2007 ▶); data reduction: SAINT; program(s) used to solve structure: SHELXS97 (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: ORTEP-3 for Windows (Farrugia, 1997 ▶); software used to prepare material for publication: WinGX (Farrugia, 1999 ▶) and PLATON (Spek, 2009 ▶). Crystal structure: contains datablocks I, global. DOI: 10.1107/S1600536810025985/ci5126sup1.cif Structure factors: contains datablocks I. DOI: 10.1107/S1600536810025985/ci5126Isup2.hkl Additional supplementary materials: crystallographic information; 3D view; checkCIF report
[Ni(C8H7O3)2(C6H6N2O)2(H2O)2]·2H2OZ = 1
Mr = 677.28F(000) = 354
Triclinic, P1Dx = 1.505 Mg m3
Hall symbol: -P 1Mo Kα radiation, λ = 0.71073 Å
a = 8.1279 (2) ÅCell parameters from 7665 reflections
b = 9.7006 (2) Åθ = 2.2–28.4°
c = 10.0636 (3) ŵ = 0.72 mm1
α = 101.637 (3)°T = 100 K
β = 91.634 (2)°Block, blue
γ = 105.137 (3)°0.35 × 0.26 × 0.19 mm
V = 747.42 (4) Å3
Bruker Kappa APEXII CCD area-detector diffractometer3740 independent reflections
Radiation source: fine-focus sealed tube3454 reflections with I > 2σ(I)
graphiteRint = 0.024
φ and ω scansθmax = 28.4°, θmin = 2.1°
Absorption correction: multi-scan (SADABS; Bruker, 2005)h = −10→10
Tmin = 0.797, Tmax = 0.871k = −12→12
13749 measured reflectionsl = −13→13
Refinement on F2Primary atom site location: structure-invariant direct methods
Least-squares matrix: fullSecondary atom site location: difference Fourier map
R[F2 > 2σ(F2)] = 0.026Hydrogen site location: inferred from neighbouring sites
wR(F2) = 0.067H atoms treated by a mixture of independent and constrained refinement
S = 1.04w = 1/[σ2(Fo2) + (0.0304P)2 + 0.3607P] where P = (Fo2 + 2Fc2)/3
3740 reflections(Δ/σ)max = 0.001
228 parametersΔρmax = 0.41 e Å3
0 restraintsΔρmin = −0.32 e Å3
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/Ueq
Ni11.00000.50000.50000.01031 (7)
O10.84093 (11)0.34709 (9)0.34598 (9)0.01344 (18)
O20.97158 (13)0.37223 (10)0.15603 (9)0.0186 (2)
O30.51173 (13)−0.29261 (10)0.00777 (10)0.0227 (2)
O41.23447 (12)−0.12322 (10)0.38559 (10)0.01808 (19)
O50.84001 (12)0.41637 (10)0.63798 (10)0.01381 (18)
H510.824 (2)0.328 (2)0.6383 (18)0.026 (5)*
H520.880 (3)0.466 (2)0.710 (2)0.033 (5)*
O61.09929 (14)0.36688 (11)−0.10135 (11)0.0217 (2)
H611.060 (2)0.3618 (18)−0.0275 (19)0.020*
H621.093 (2)0.444 (2)−0.1194 (17)0.020*
N11.15013 (13)0.35208 (11)0.50331 (10)0.0123 (2)
N21.00731 (15)−0.08680 (12)0.27740 (11)0.0164 (2)
H210.955 (2)−0.027 (2)0.2615 (17)0.021 (4)*
H220.976 (2)−0.178 (2)0.2312 (19)0.028 (5)*
C10.86838 (16)0.29893 (13)0.22424 (12)0.0132 (2)
C20.77440 (16)0.14302 (13)0.16204 (12)0.0136 (2)
C30.65161 (17)0.06356 (14)0.23287 (13)0.0166 (3)
H30.62700.10960.31970.020*
C40.56565 (17)−0.08093 (14)0.17828 (14)0.0186 (3)
H40.4811−0.13300.22680.022*
C50.60317 (17)−0.15037 (14)0.05176 (13)0.0166 (3)
C60.72616 (18)−0.07365 (14)−0.01936 (13)0.0193 (3)
H60.7531−0.1207−0.10490.023*
C70.80961 (18)0.07279 (14)0.03580 (13)0.0178 (3)
H70.89200.1256−0.01380.021*
C80.5467 (2)−0.37024 (15)−0.11975 (15)0.0267 (3)
H8A0.4740−0.4712−0.13860.040*
H8B0.6672−0.3705−0.11610.040*
H8C0.5229−0.3223−0.19220.040*
C91.30962 (17)0.40473 (14)0.56440 (13)0.0165 (3)
H91.34740.50530.60800.020*
C101.42177 (17)0.31926 (14)0.56686 (14)0.0191 (3)
H101.53280.36000.61300.023*
C111.36869 (17)0.17315 (14)0.50057 (13)0.0156 (2)
H111.44280.11190.50070.019*
C121.20523 (16)0.11758 (13)0.43385 (12)0.0124 (2)
C131.09960 (16)0.21032 (13)0.43965 (12)0.0124 (2)
H130.98670.17170.39670.015*
C141.14890 (16)−0.04076 (13)0.36228 (12)0.0132 (2)
U11U22U33U12U13U23
Ni10.01171 (11)0.00792 (11)0.01082 (11)0.00341 (8)−0.00027 (8)0.00012 (8)
O10.0145 (4)0.0117 (4)0.0131 (4)0.0045 (3)−0.0005 (3)−0.0006 (3)
O20.0262 (5)0.0119 (4)0.0144 (4)0.0005 (4)0.0021 (4)0.0015 (3)
O30.0265 (5)0.0112 (4)0.0244 (5)−0.0007 (4)−0.0025 (4)−0.0016 (4)
O40.0195 (5)0.0117 (4)0.0246 (5)0.0068 (4)0.0026 (4)0.0039 (4)
O50.0164 (4)0.0100 (4)0.0140 (4)0.0034 (3)−0.0002 (3)0.0007 (3)
O60.0344 (6)0.0147 (5)0.0164 (5)0.0076 (4)0.0037 (4)0.0025 (4)
N10.0140 (5)0.0108 (5)0.0123 (5)0.0044 (4)0.0013 (4)0.0018 (4)
N20.0217 (6)0.0112 (5)0.0167 (5)0.0071 (4)−0.0002 (4)0.0010 (4)
C10.0146 (6)0.0117 (5)0.0137 (6)0.0052 (4)−0.0024 (4)0.0017 (4)
C20.0151 (6)0.0112 (5)0.0135 (6)0.0039 (4)−0.0024 (5)0.0007 (4)
C30.0175 (6)0.0152 (6)0.0157 (6)0.0043 (5)0.0021 (5)0.0006 (5)
C40.0174 (6)0.0152 (6)0.0211 (6)0.0011 (5)0.0022 (5)0.0033 (5)
C50.0173 (6)0.0111 (6)0.0190 (6)0.0025 (5)−0.0049 (5)0.0006 (5)
C60.0261 (7)0.0152 (6)0.0136 (6)0.0041 (5)0.0007 (5)−0.0018 (5)
C70.0223 (6)0.0139 (6)0.0144 (6)0.0016 (5)0.0019 (5)0.0014 (5)
C80.0364 (8)0.0146 (6)0.0236 (7)0.0044 (6)−0.0065 (6)−0.0038 (5)
C90.0165 (6)0.0115 (6)0.0195 (6)0.0036 (5)−0.0013 (5)−0.0002 (5)
C100.0140 (6)0.0169 (6)0.0250 (7)0.0046 (5)−0.0031 (5)0.0013 (5)
C110.0161 (6)0.0150 (6)0.0185 (6)0.0085 (5)0.0029 (5)0.0043 (5)
C120.0158 (6)0.0104 (5)0.0120 (5)0.0044 (4)0.0041 (4)0.0034 (4)
C130.0140 (6)0.0116 (5)0.0117 (5)0.0036 (4)0.0014 (4)0.0028 (4)
C140.0169 (6)0.0110 (5)0.0129 (5)0.0047 (4)0.0061 (5)0.0037 (4)
Ni1—O12.0569 (9)C2—C71.3904 (18)
Ni1—O1i2.0569 (9)C3—C41.3822 (18)
Ni1—O52.0697 (9)C3—H30.95
Ni1—O5i2.0697 (9)C4—C51.3970 (19)
Ni1—N12.1167 (10)C4—H40.95
Ni1—N1i2.1167 (10)C5—C61.3902 (19)
O1—C11.2681 (15)C6—C71.3941 (18)
O2—C11.2644 (16)C6—H60.95
O3—C51.3607 (15)C7—H70.95
O3—C81.4274 (18)C8—H8A0.98
O4—C141.2392 (15)C8—H8B0.98
O5—H510.83 (2)C8—H8C0.98
O5—H520.79 (2)C9—C101.3858 (18)
O6—H610.823 (18)C9—H90.95
O6—H620.818 (18)C10—C111.3867 (18)
N1—C91.3421 (16)C10—H100.95
N1—C131.3434 (15)C11—C121.3913 (18)
N2—C141.3324 (17)C11—H110.95
N2—H210.839 (18)C12—C131.3910 (17)
N2—H220.877 (19)C12—C141.5017 (16)
C1—C21.5001 (17)C13—H130.95
C2—C31.3995 (18)
O1i—Ni1—O1180.0C3—C4—C5119.95 (12)
O1—Ni1—O588.52 (4)C3—C4—H4120.0
O1i—Ni1—O591.48 (4)C5—C4—H4120.0
O1—Ni1—O5i91.48 (4)O3—C5—C4115.16 (12)
O1i—Ni1—O5i88.52 (4)O3—C5—C6124.95 (12)
O1—Ni1—N188.64 (4)C6—C5—C4119.89 (12)
O1i—Ni1—N191.36 (4)C5—C6—C7119.52 (12)
O1—Ni1—N1i91.36 (4)C5—C6—H6120.2
O1i—Ni1—N1i88.64 (4)C7—C6—H6120.2
O5—Ni1—O5i180.000 (1)C2—C7—C6121.20 (12)
O5—Ni1—N193.21 (4)C2—C7—H7119.4
O5i—Ni1—N186.79 (4)C6—C7—H7119.4
O5—Ni1—N1i86.79 (4)O3—C8—H8A109.5
O5i—Ni1—N1i93.21 (4)O3—C8—H8B109.5
N1—Ni1—N1i180.0O3—C8—H8C109.5
C1—O1—Ni1130.22 (8)H8A—C8—H8B109.5
C5—O3—C8117.74 (11)H8A—C8—H8C109.5
Ni1—O5—H51117.6 (12)H8B—C8—H8C109.5
Ni1—O5—H52104.9 (14)N1—C9—C10123.11 (12)
H51—O5—H52111.1 (19)N1—C9—H9118.4
H62—O6—H61108.0 (17)C10—C9—H9118.4
C9—N1—Ni1118.24 (8)C9—C10—C11118.69 (12)
C9—N1—C13117.80 (11)C9—C10—H10120.7
C13—N1—Ni1123.79 (8)C11—C10—H10120.7
C14—N2—H21120.0 (12)C10—C11—C12118.98 (11)
C14—N2—H22119.6 (12)C10—C11—H11120.5
H21—N2—H22120.1 (17)C12—C11—H11120.5
O1—C1—C2116.29 (11)C11—C12—C14118.60 (11)
O2—C1—O1124.22 (11)C13—C12—C11118.44 (11)
O2—C1—C2119.46 (11)C13—C12—C14122.93 (11)
C3—C2—C1120.07 (11)N1—C13—C12122.95 (11)
C7—C2—C1121.44 (12)N1—C13—H13118.5
C7—C2—C3118.47 (11)C12—C13—H13118.5
C2—C3—H3119.5O4—C14—N2122.82 (12)
C4—C3—C2120.95 (12)O4—C14—C12118.87 (11)
C4—C3—H3119.5N2—C14—C12118.31 (11)
O5—Ni1—O1—C1−160.75 (10)C1—C2—C3—C4−178.93 (12)
O5i—Ni1—O1—C119.25 (10)C7—C2—C3—C4−0.71 (19)
N1—Ni1—O1—C1−67.50 (10)C1—C2—C7—C6177.72 (12)
N1i—Ni1—O1—C1112.50 (10)C3—C2—C7—C6−0.5 (2)
O1—Ni1—N1—C9162.56 (10)C2—C3—C4—C51.2 (2)
O1i—Ni1—N1—C9−17.44 (10)C8—O3—C5—C4−178.85 (12)
O1—Ni1—N1—C13−12.62 (10)C8—O3—C5—C61.3 (2)
O1i—Ni1—N1—C13167.38 (10)C3—C4—C5—O3179.75 (12)
O5—Ni1—N1—C9−109.01 (10)C3—C4—C5—C6−0.4 (2)
O5i—Ni1—N1—C970.99 (10)O3—C5—C6—C7179.07 (13)
O5—Ni1—N1—C1375.81 (10)C4—C5—C6—C7−0.7 (2)
O5i—Ni1—N1—C13−104.19 (10)C5—C6—C7—C21.2 (2)
Ni1—O1—C1—O2−29.75 (18)N1—C9—C10—C111.5 (2)
Ni1—O1—C1—C2148.20 (9)C9—C10—C11—C120.1 (2)
Ni1—N1—C9—C10−176.80 (10)C10—C11—C12—C13−1.78 (19)
C13—N1—C9—C10−1.33 (19)C10—C11—C12—C14179.97 (11)
Ni1—N1—C13—C12174.71 (9)C11—C12—C13—N12.04 (18)
C9—N1—C13—C12−0.49 (18)C14—C12—C13—N1−179.79 (11)
O1—C1—C2—C36.12 (17)C11—C12—C14—O413.48 (17)
O1—C1—C2—C7−172.05 (12)C11—C12—C14—N2−167.30 (12)
O2—C1—C2—C3−175.83 (11)C13—C12—C14—O4−164.68 (12)
O2—C1—C2—C76.00 (18)C13—C12—C14—N214.53 (18)
D—H···AD—HH···AD···AD—H···A
N2—H22···O6ii0.88 (2)1.96 (2)2.8306 (16)170 (2)
O5—H51···O4iii0.83 (2)1.88 (2)2.7074 (14)171 (2)
O5—H52···O2i0.79 (2)1.95 (2)2.7040 (14)159 (2)
O6—H61···O20.82 (2)1.99 (2)2.8136 (14)174 (2)
O6—H62···O2iv0.82 (2)2.08 (2)2.8887 (15)169 (2)
C9—H9···O1i0.952.352.9719 (16)123
C10—H10···O5v0.952.413.2973 (17)156
Table 1

Selected bond lengths (Å)

Ni1—O12.0569 (9)
Ni1—O52.0697 (9)
Ni1—N12.1167 (10)
Table 2

Hydrogen-bond geometry (Å, °)

D—H⋯AD—HH⋯ADAD—H⋯A
N2—H22⋯O6i0.88 (2)1.96 (2)2.8306 (16)170 (2)
O5—H51⋯O4ii0.83 (2)1.88 (2)2.7074 (14)171 (2)
O5—H52⋯O2iii0.79 (2)1.95 (2)2.7040 (14)159 (2)
O6—H61⋯O20.82 (2)1.99 (2)2.8136 (14)174 (2)
O6—H62⋯O2iv0.82 (2)2.08 (2)2.8887 (15)169 (2)
C9—H9⋯O1iii0.952.352.9719 (16)123
C10—H10⋯O5v0.952.413.2973 (17)156

Symmetry codes: (i) ; (ii) ; (iii) ; (iv) ; (v) .

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5.  Diaqua-bis(2-chloro-benzoato-κO)bis-(nicotinamide-κN)nickel(II).

Authors:  Tuncer Hökelek; Hakan Dal; Barış Tercan; F Elif Ozbek; Hacali Necefoğlu
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Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2010-08-21

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Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2011-06-11

3.  Crystal structure and Hirshfeld surface analysis of di-aqua-bis-(isonicotinamide-κN)bis-(2,4,6-tri-methyl-benzoato-κO1)nickel(II) dihydrate.

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