| Literature DB >> 21588184 |
Tuncer Hökelek, Güner Saka, Barış Tercan, Efdal Cimen, Hacali Necefoğlu.
Abstract
In the centrosymmetric title compound, [Cu(C(8)H(7)O(2))(2)(C(6)H(6)N(2)O)(2)]·2H(2)O, the Cu(II) ion is located on a crystallographic inversion center. The asymmetric unit is completed by one 4-methyl-benzoate anion, one isonicotinamide (INA) ligand and one uncoordinated water mol-ecule; all the ligands are monodentate. The two O and the two N atoms around the Cu(II) ion form a slightly distorted square-planar arrangement. The dihedral angle between the carboxyl-ate group and the attached benzene ring is 13.86 (9)°, while the pyridine and benzene rings are oriented at a dihedral angle of 86.08 (5)°. The uncoordinated water mol-ecules are linked to the INA ligands by O-H⋯O hydrogen bonds. In the crystal structure, inter-molecular O-H⋯O, N-H⋯O and C-H⋯O hydrogen bonds link the mol-ecules into a three-dimensional network.Entities:
Year: 2010 PMID: 21588184 PMCID: PMC3007312 DOI: 10.1107/S1600536810028060
Source DB: PubMed Journal: Acta Crystallogr Sect E Struct Rep Online ISSN: 1600-5368
| [Cu(C8H7O2)2(C6H6N2O)2]·2H2O | |
| Monoclinic, | Mo |
| Hall symbol: -P 2ybc | Cell parameters from 5200 reflections |
| θ = 2.7–28.2° | |
| µ = 0.91 mm−1 | |
| β = 95.906 (3)° | Block, violet |
| 0.29 × 0.27 × 0.25 mm | |
| Bruker Kappa APEXII CCD area-detector diffractometer | 3199 independent reflections |
| Radiation source: fine-focus sealed tube | 2637 reflections with |
| graphite | |
| φ and ω scans | θmax = 28.4°, θmin = 2.0° |
| Absorption correction: multi-scan ( | |
| 11754 measured reflections |
| Refinement on | Primary atom site location: structure-invariant direct methods |
| Least-squares matrix: full | Secondary atom site location: difference Fourier map |
| Hydrogen site location: inferred from neighbouring sites | |
| H atoms treated by a mixture of independent and constrained refinement | |
| 3199 reflections | (Δ/σ)max < 0.001 |
| 204 parameters | Δρmax = 0.63 e Å−3 |
| 0 restraints | Δρmin = −0.51 e Å−3 |
| Geometry. All esds (except the esd in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell esds are taken into account individually in the estimation of esds in distances, angles and torsion angles; correlations between esds in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell esds is used for estimating esds involving l.s. planes. |
| Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > 2sigma(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger. |
| Cu1 | 0.0000 | 0.0000 | 0.0000 | 0.01074 (9) | |
| O1 | 0.0382 (2) | −0.09651 (7) | −0.17689 (11) | 0.0173 (3) | |
| O2 | −0.1745 (2) | −0.00164 (6) | −0.14584 (11) | 0.0140 (3) | |
| O3 | −0.8594 (2) | −0.25069 (7) | 0.09449 (12) | 0.0191 (3) | |
| O4 | −1.1555 (3) | −0.22382 (8) | −0.10917 (14) | 0.0184 (3) | |
| H41 | −1.077 (5) | −0.2318 (14) | −0.055 (2) | 0.027 (7)* | |
| H42 | −1.097 (5) | −0.1903 (14) | −0.132 (2) | 0.028 (7)* | |
| N1 | −0.2249 (3) | −0.07406 (8) | 0.05451 (13) | 0.0124 (3) | |
| N2 | −0.6168 (3) | −0.27723 (9) | 0.24930 (14) | 0.0158 (3) | |
| H21 | −0.707 (4) | −0.3082 (12) | 0.2657 (19) | 0.016 (6)* | |
| H22 | −0.487 (4) | −0.2719 (10) | 0.2909 (18) | 0.007 (5)* | |
| C1 | −0.1300 (3) | −0.05595 (9) | −0.20439 (15) | 0.0134 (4) | |
| C2 | −0.2973 (3) | −0.06975 (9) | −0.30646 (15) | 0.0112 (3) | |
| C3 | −0.2437 (3) | −0.11966 (9) | −0.38569 (16) | 0.0144 (4) | |
| H3 | −0.1009 | −0.1435 | −0.3763 | 0.017* | |
| C4 | −0.4027 (3) | −0.13357 (9) | −0.47810 (16) | 0.0144 (4) | |
| H4 | −0.3645 | −0.1665 | −0.5308 | 0.017* | |
| C5 | −0.6202 (3) | −0.09904 (9) | −0.49401 (15) | 0.0132 (4) | |
| C6 | −0.6723 (3) | −0.04968 (9) | −0.41381 (16) | 0.0136 (4) | |
| H6 | −0.8162 | −0.0264 | −0.4225 | 0.016* | |
| C7 | −0.5137 (3) | −0.03481 (9) | −0.32179 (16) | 0.0126 (4) | |
| H7 | −0.5510 | −0.0013 | −0.2697 | 0.015* | |
| C8 | −0.7908 (3) | −0.11485 (10) | −0.59515 (16) | 0.0175 (4) | |
| H8A | −0.8165 | −0.1647 | −0.6006 | 0.026* | |
| H8B | −0.7274 | −0.0984 | −0.6616 | 0.026* | |
| H8C | −0.9374 | −0.0915 | −0.5878 | 0.026* | |
| C9 | −0.4391 (3) | −0.08763 (10) | 0.00027 (16) | 0.0143 (4) | |
| H9 | −0.4908 | −0.0604 | −0.0621 | 0.017* | |
| C10 | −0.5851 (3) | −0.14000 (9) | 0.03306 (16) | 0.0149 (4) | |
| H10 | −0.7323 | −0.1471 | −0.0062 | 0.018* | |
| C11 | −0.5111 (3) | −0.18220 (9) | 0.12538 (16) | 0.0132 (4) | |
| C12 | −0.2892 (3) | −0.16896 (9) | 0.18202 (16) | 0.0149 (4) | |
| H12 | −0.2327 | −0.1958 | 0.2440 | 0.018* | |
| C13 | −0.1551 (3) | −0.11484 (10) | 0.14368 (16) | 0.0150 (4) | |
| H13 | −0.0079 | −0.1062 | 0.1820 | 0.018* | |
| C14 | −0.6762 (3) | −0.24014 (9) | 0.15535 (16) | 0.0145 (4) |
| Cu1 | 0.01320 (16) | 0.01035 (15) | 0.00829 (16) | −0.00275 (12) | −0.00076 (11) | −0.00013 (12) |
| O1 | 0.0140 (7) | 0.0194 (7) | 0.0172 (7) | 0.0006 (5) | −0.0041 (5) | 0.0042 (5) |
| O2 | 0.0181 (6) | 0.0127 (6) | 0.0103 (6) | −0.0040 (5) | −0.0020 (5) | 0.0005 (5) |
| O3 | 0.0180 (7) | 0.0167 (6) | 0.0217 (8) | −0.0030 (5) | −0.0025 (6) | 0.0026 (6) |
| O4 | 0.0205 (8) | 0.0147 (7) | 0.0189 (8) | −0.0022 (6) | −0.0036 (6) | 0.0018 (6) |
| N1 | 0.0131 (8) | 0.0128 (7) | 0.0110 (8) | −0.0015 (6) | −0.0007 (6) | −0.0005 (6) |
| N2 | 0.0154 (9) | 0.0143 (8) | 0.0168 (9) | −0.0034 (6) | −0.0019 (7) | 0.0021 (6) |
| C1 | 0.0144 (9) | 0.0138 (8) | 0.0118 (9) | −0.0058 (7) | 0.0011 (7) | 0.0037 (7) |
| C2 | 0.0129 (9) | 0.0102 (8) | 0.0102 (9) | −0.0029 (6) | −0.0004 (7) | 0.0014 (6) |
| C3 | 0.0139 (9) | 0.0128 (8) | 0.0164 (10) | 0.0011 (7) | 0.0013 (7) | 0.0016 (7) |
| C4 | 0.0195 (9) | 0.0109 (8) | 0.0131 (9) | −0.0004 (7) | 0.0024 (7) | −0.0036 (7) |
| C5 | 0.0163 (9) | 0.0117 (8) | 0.0110 (9) | −0.0045 (7) | −0.0010 (7) | 0.0016 (7) |
| C6 | 0.0130 (9) | 0.0127 (8) | 0.0149 (10) | 0.0003 (6) | 0.0003 (7) | 0.0019 (7) |
| C7 | 0.0155 (9) | 0.0106 (8) | 0.0117 (9) | −0.0016 (6) | 0.0014 (7) | −0.0011 (7) |
| C8 | 0.0205 (10) | 0.0174 (9) | 0.0136 (10) | −0.0034 (7) | −0.0032 (8) | −0.0003 (7) |
| C9 | 0.0161 (9) | 0.0142 (9) | 0.0124 (9) | 0.0014 (6) | 0.0000 (7) | −0.0001 (7) |
| C10 | 0.0148 (9) | 0.0147 (9) | 0.0149 (10) | 0.0004 (7) | −0.0004 (7) | −0.0015 (7) |
| C11 | 0.0152 (9) | 0.0110 (8) | 0.0137 (10) | 0.0005 (6) | 0.0028 (7) | −0.0014 (7) |
| C12 | 0.0200 (10) | 0.0130 (8) | 0.0116 (9) | −0.0013 (7) | 0.0012 (7) | 0.0014 (7) |
| C13 | 0.0149 (9) | 0.0164 (9) | 0.0131 (9) | −0.0001 (7) | −0.0013 (7) | 0.0001 (7) |
| C14 | 0.0133 (9) | 0.0120 (8) | 0.0183 (10) | 0.0011 (7) | 0.0027 (7) | −0.0012 (7) |
| Cu1—O2 | 1.9192 (13) | C4—H4 | 0.9300 |
| Cu1—O2i | 1.9192 (13) | C5—C4 | 1.401 (3) |
| Cu1—N1 | 2.0562 (15) | C5—C6 | 1.396 (3) |
| Cu1—N1i | 2.0562 (15) | C5—C8 | 1.504 (3) |
| O1—C1 | 1.249 (2) | C6—H6 | 0.9300 |
| O2—C1 | 1.287 (2) | C7—C6 | 1.382 (3) |
| O3—C14 | 1.228 (2) | C7—H7 | 0.9300 |
| O4—H41 | 0.77 (3) | C8—H8A | 0.9600 |
| O4—H42 | 0.78 (3) | C8—H8B | 0.9600 |
| N1—C9 | 1.350 (2) | C8—H8C | 0.9600 |
| N1—C13 | 1.345 (2) | C9—H9 | 0.9300 |
| N2—C14 | 1.341 (2) | C10—C9 | 1.381 (3) |
| N2—H21 | 0.82 (2) | C10—C11 | 1.395 (3) |
| N2—H22 | 0.86 (2) | C10—H10 | 0.9300 |
| C2—C1 | 1.495 (3) | C11—C12 | 1.398 (3) |
| C2—C3 | 1.397 (2) | C11—C14 | 1.516 (2) |
| C2—C7 | 1.398 (3) | C12—C13 | 1.388 (2) |
| C3—C4 | 1.383 (3) | C12—H12 | 0.9300 |
| C3—H3 | 0.9300 | C13—H13 | 0.9300 |
| O2i—Cu1—O2 | 180.00 (4) | C7—C6—C5 | 121.11 (17) |
| O2—Cu1—N1 | 89.67 (6) | C7—C6—H6 | 119.4 |
| O2i—Cu1—N1 | 90.33 (6) | C2—C7—H7 | 119.8 |
| O2—Cu1—N1i | 90.33 (6) | C6—C7—C2 | 120.40 (17) |
| O2i—Cu1—N1i | 89.67 (6) | C6—C7—H7 | 119.8 |
| N1—Cu1—N1i | 180.00 (10) | C5—C8—H8A | 109.5 |
| C1—O2—Cu1 | 113.26 (12) | C5—C8—H8B | 109.5 |
| H42—O4—H41 | 103 (3) | C5—C8—H8C | 109.5 |
| C9—N1—Cu1 | 122.91 (12) | H8A—C8—H8B | 109.5 |
| C13—N1—Cu1 | 120.10 (12) | H8A—C8—H8C | 109.5 |
| C13—N1—C9 | 116.85 (16) | H8B—C8—H8C | 109.5 |
| C14—N2—H21 | 117.9 (16) | N1—C9—C10 | 123.05 (17) |
| C14—N2—H22 | 123.8 (14) | N1—C9—H9 | 118.5 |
| H22—N2—H21 | 118 (2) | C10—C9—H9 | 118.5 |
| O1—C1—O2 | 122.72 (18) | C9—C10—C11 | 119.75 (17) |
| O1—C1—C2 | 121.14 (17) | C9—C10—H10 | 120.1 |
| O2—C1—C2 | 116.10 (16) | C11—C10—H10 | 120.1 |
| C3—C2—C1 | 120.47 (16) | C10—C11—C12 | 117.82 (17) |
| C3—C2—C7 | 119.07 (17) | C10—C11—C14 | 117.32 (16) |
| C7—C2—C1 | 120.42 (16) | C12—C11—C14 | 124.85 (17) |
| C2—C3—H3 | 120.0 | C11—C12—H12 | 120.7 |
| C4—C3—C2 | 120.03 (17) | C13—C12—C11 | 118.51 (17) |
| C4—C3—H3 | 120.0 | C13—C12—H12 | 120.7 |
| C3—C4—C5 | 121.34 (17) | N1—C13—C12 | 124.04 (17) |
| C3—C4—H4 | 119.3 | N1—C13—H13 | 118.0 |
| C5—C4—H4 | 119.3 | C12—C13—H13 | 118.0 |
| C4—C5—C8 | 120.56 (16) | O3—C14—N2 | 122.56 (17) |
| C6—C5—C4 | 118.05 (17) | O3—C14—C11 | 119.40 (17) |
| C6—C5—C8 | 121.39 (17) | N2—C14—C11 | 118.03 (17) |
| C5—C6—H6 | 119.4 | ||
| O2i—Cu1—N1—C9 | 161.86 (14) | C1—C2—C7—C6 | −177.34 (16) |
| O2—Cu1—N1—C9 | −18.14 (14) | C3—C2—C7—C6 | 0.2 (3) |
| O2i—Cu1—N1—C13 | −22.59 (14) | C2—C3—C4—C5 | −0.7 (3) |
| O2—Cu1—N1—C13 | 157.41 (14) | C6—C5—C4—C3 | 0.2 (3) |
| N1—Cu1—O2—C1 | −76.89 (12) | C8—C5—C4—C3 | 179.96 (17) |
| N1i—Cu1—O2—C1 | 103.11 (12) | C4—C5—C6—C7 | 0.5 (3) |
| Cu1—O2—C1—O1 | −11.8 (2) | C8—C5—C6—C7 | −179.23 (16) |
| Cu1—O2—C1—C2 | 166.15 (11) | C2—C7—C6—C5 | −0.7 (3) |
| Cu1—N1—C9—C10 | 176.28 (14) | C11—C10—C9—N1 | −0.8 (3) |
| C13—N1—C9—C10 | 0.6 (3) | C9—C10—C11—C12 | 0.5 (3) |
| Cu1—N1—C13—C12 | −175.86 (14) | C9—C10—C11—C14 | −178.32 (16) |
| C9—N1—C13—C12 | 0.0 (3) | C10—C11—C12—C13 | 0.0 (3) |
| C3—C2—C1—O1 | −13.1 (3) | C14—C11—C12—C13 | 178.73 (17) |
| C7—C2—C1—O1 | 164.51 (16) | C10—C11—C14—O3 | 4.5 (2) |
| C3—C2—C1—O2 | 169.00 (16) | C10—C11—C14—N2 | −174.41 (17) |
| C7—C2—C1—O2 | −13.4 (2) | C12—C11—C14—O3 | −174.24 (18) |
| C7—C2—C3—C4 | 0.5 (3) | C12—C11—C14—N2 | 6.9 (3) |
| C1—C2—C3—C4 | 178.05 (16) | C11—C12—C13—N1 | −0.3 (3) |
| H··· | ||||
| N2—H21···O1ii | 0.82 (2) | 2.46 (2) | 3.283 (2) | 177 (2) |
| N2—H22···O4iii | 0.86 (2) | 2.14 (2) | 2.983 (2) | 171 (2) |
| O4—H41···O3 | 0.77 (3) | 2.10 (3) | 2.866 (2) | 178 (3) |
| O4—H42···O1iv | 0.78 (3) | 2.04 (3) | 2.813 (2) | 173 (3) |
| C3—H3···O3v | 0.93 | 2.48 | 3.324 (2) | 151 |
| C10—H10···O1iv | 0.93 | 2.50 | 3.242 (2) | 137 |
| C12—H12···O4iii | 0.93 | 2.34 | 3.253 (2) | 169 |
Hydrogen-bond geometry (Å, °)
| H⋯ | ||||
|---|---|---|---|---|
| N2—H21⋯O1i | 0.82 (2) | 2.46 (2) | 3.283 (2) | 177 (2) |
| N2—H22⋯O4ii | 0.86 (2) | 2.14 (2) | 2.983 (2) | 171 (2) |
| O4—H41⋯O3 | 0.77 (3) | 2.10 (3) | 2.866 (2) | 178 (3) |
| O4—H42⋯O1iii | 0.78 (3) | 2.04 (3) | 2.813 (2) | 173 (3) |
| C3—H3⋯O3iv | 0.93 | 2.48 | 3.324 (2) | 151 |
| C10—H10⋯O1iii | 0.93 | 2.50 | 3.242 (2) | 137 |
| C12—H12⋯O4ii | 0.93 | 2.34 | 3.253 (2) | 169 |
Symmetry codes: (i) ; (ii) ; (iii) ; (iv) .