Literature DB >> 21588184

Bis(isonicotinamide-κN)bis-(4-methyl-benzoato-κO)copper(II) dihydrate.

Tuncer Hökelek, Güner Saka, Barış Tercan, Efdal Cimen, Hacali Necefoğlu.   

Abstract

In the centrosymmetric title compound, [Cu(C(8)H(7)O(2))(2)(C(6)H(6)N(2)O)(2)]·2H(2)O, the Cu(II) ion is located on a crystallographic inversion center. The asymmetric unit is completed by one 4-methyl-benzoate anion, one isonicotinamide (INA) ligand and one uncoordinated water mol-ecule; all the ligands are monodentate. The two O and the two N atoms around the Cu(II) ion form a slightly distorted square-planar arrangement. The dihedral angle between the carboxyl-ate group and the attached benzene ring is 13.86 (9)°, while the pyridine and benzene rings are oriented at a dihedral angle of 86.08 (5)°. The uncoordinated water mol-ecules are linked to the INA ligands by O-H⋯O hydrogen bonds. In the crystal structure, inter-molecular O-H⋯O, N-H⋯O and C-H⋯O hydrogen bonds link the mol-ecules into a three-dimensional network.

Entities:  

Year:  2010        PMID: 21588184      PMCID: PMC3007312          DOI: 10.1107/S1600536810028060

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For niacin, see: Krishnamachari (1974 ▶) and for N,N-diethyl­nicotinamide, see: Bigoli et al. (1972 ▶). For related structures, see: Hökelek et al. (1996 ▶, 2009a ▶,b ▶,c ▶); Hökelek & Necefoğlu (1998 ▶); Necefoğlu et al. (2010a ▶,b ▶).

Experimental

Crystal data

[Cu(C8H7O2)2(C6H6N2O)2]·2H2O M = 614.11 Monoclinic, a = 5.7138 (2) Å b = 18.9948 (4) Å c = 11.9671 (3) Å β = 95.906 (3)° V = 1291.92 (6) Å3 Z = 2 Mo Kα radiation μ = 0.91 mm−1 T = 100 K 0.29 × 0.27 × 0.25 mm

Data collection

Bruker Kappa APEXII CCD area-detector diffractometer Absorption correction: multi-scan (SADABS; Bruker, 2005 ▶) T min = 0.763, T max = 0.959 11754 measured reflections 3199 independent reflections 2637 reflections with I > 2σ(I) R int = 0.026

Refinement

R[F 2 > 2σ(F 2)] = 0.035 wR(F 2) = 0.080 S = 1.08 3199 reflections 204 parameters H atoms treated by a mixture of independent and constrained refinement Δρmax = 0.63 e Å−3 Δρmin = −0.51 e Å−3 Data collection: APEX2 (Bruker, 2007 ▶); cell refinement: SAINT (Bruker, 2007 ▶); data reduction: SAINT; program(s) used to solve structure: SHELXS97 (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: ORTEP-3 for Windows (Farrugia, 1997 ▶); software used to prepare material for publication: WinGX (Farrugia, 1999 ▶). Crystal structure: contains datablocks I, global. DOI: 10.1107/S1600536810028060/su2197sup1.cif Structure factors: contains datablocks I. DOI: 10.1107/S1600536810028060/su2197Isup2.hkl Additional supplementary materials: crystallographic information; 3D view; checkCIF report
[Cu(C8H7O2)2(C6H6N2O)2]·2H2OF(000) = 638
Mr = 614.11Dx = 1.579 Mg m3
Monoclinic, P21/cMo Kα radiation, λ = 0.71073 Å
Hall symbol: -P 2ybcCell parameters from 5200 reflections
a = 5.7138 (2) Åθ = 2.7–28.2°
b = 18.9948 (4) ŵ = 0.91 mm1
c = 11.9671 (3) ÅT = 100 K
β = 95.906 (3)°Block, violet
V = 1291.92 (6) Å30.29 × 0.27 × 0.25 mm
Z = 2
Bruker Kappa APEXII CCD area-detector diffractometer3199 independent reflections
Radiation source: fine-focus sealed tube2637 reflections with I > 2σ(I)
graphiteRint = 0.026
φ and ω scansθmax = 28.4°, θmin = 2.0°
Absorption correction: multi-scan (SADABS; Bruker, 2005)h = −7→7
Tmin = 0.763, Tmax = 0.959k = −20→25
11754 measured reflectionsl = −16→14
Refinement on F2Primary atom site location: structure-invariant direct methods
Least-squares matrix: fullSecondary atom site location: difference Fourier map
R[F2 > 2σ(F2)] = 0.035Hydrogen site location: inferred from neighbouring sites
wR(F2) = 0.080H atoms treated by a mixture of independent and constrained refinement
S = 1.08w = 1/[σ2(Fo2) + (0.0303P)2 + 1.1079P] where P = (Fo2 + 2Fc2)/3
3199 reflections(Δ/σ)max < 0.001
204 parametersΔρmax = 0.63 e Å3
0 restraintsΔρmin = −0.51 e Å3
Geometry. All esds (except the esd in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell esds are taken into account individually in the estimation of esds in distances, angles and torsion angles; correlations between esds in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell esds is used for estimating esds involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > 2sigma(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/Ueq
Cu10.00000.00000.00000.01074 (9)
O10.0382 (2)−0.09651 (7)−0.17689 (11)0.0173 (3)
O2−0.1745 (2)−0.00164 (6)−0.14584 (11)0.0140 (3)
O3−0.8594 (2)−0.25069 (7)0.09449 (12)0.0191 (3)
O4−1.1555 (3)−0.22382 (8)−0.10917 (14)0.0184 (3)
H41−1.077 (5)−0.2318 (14)−0.055 (2)0.027 (7)*
H42−1.097 (5)−0.1903 (14)−0.132 (2)0.028 (7)*
N1−0.2249 (3)−0.07406 (8)0.05451 (13)0.0124 (3)
N2−0.6168 (3)−0.27723 (9)0.24930 (14)0.0158 (3)
H21−0.707 (4)−0.3082 (12)0.2657 (19)0.016 (6)*
H22−0.487 (4)−0.2719 (10)0.2909 (18)0.007 (5)*
C1−0.1300 (3)−0.05595 (9)−0.20439 (15)0.0134 (4)
C2−0.2973 (3)−0.06975 (9)−0.30646 (15)0.0112 (3)
C3−0.2437 (3)−0.11966 (9)−0.38569 (16)0.0144 (4)
H3−0.1009−0.1435−0.37630.017*
C4−0.4027 (3)−0.13357 (9)−0.47810 (16)0.0144 (4)
H4−0.3645−0.1665−0.53080.017*
C5−0.6202 (3)−0.09904 (9)−0.49401 (15)0.0132 (4)
C6−0.6723 (3)−0.04968 (9)−0.41381 (16)0.0136 (4)
H6−0.8162−0.0264−0.42250.016*
C7−0.5137 (3)−0.03481 (9)−0.32179 (16)0.0126 (4)
H7−0.5510−0.0013−0.26970.015*
C8−0.7908 (3)−0.11485 (10)−0.59515 (16)0.0175 (4)
H8A−0.8165−0.1647−0.60060.026*
H8B−0.7274−0.0984−0.66160.026*
H8C−0.9374−0.0915−0.58780.026*
C9−0.4391 (3)−0.08763 (10)0.00027 (16)0.0143 (4)
H9−0.4908−0.0604−0.06210.017*
C10−0.5851 (3)−0.14000 (9)0.03306 (16)0.0149 (4)
H10−0.7323−0.1471−0.00620.018*
C11−0.5111 (3)−0.18220 (9)0.12538 (16)0.0132 (4)
C12−0.2892 (3)−0.16896 (9)0.18202 (16)0.0149 (4)
H12−0.2327−0.19580.24400.018*
C13−0.1551 (3)−0.11484 (10)0.14368 (16)0.0150 (4)
H13−0.0079−0.10620.18200.018*
C14−0.6762 (3)−0.24014 (9)0.15535 (16)0.0145 (4)
U11U22U33U12U13U23
Cu10.01320 (16)0.01035 (15)0.00829 (16)−0.00275 (12)−0.00076 (11)−0.00013 (12)
O10.0140 (7)0.0194 (7)0.0172 (7)0.0006 (5)−0.0041 (5)0.0042 (5)
O20.0181 (6)0.0127 (6)0.0103 (6)−0.0040 (5)−0.0020 (5)0.0005 (5)
O30.0180 (7)0.0167 (6)0.0217 (8)−0.0030 (5)−0.0025 (6)0.0026 (6)
O40.0205 (8)0.0147 (7)0.0189 (8)−0.0022 (6)−0.0036 (6)0.0018 (6)
N10.0131 (8)0.0128 (7)0.0110 (8)−0.0015 (6)−0.0007 (6)−0.0005 (6)
N20.0154 (9)0.0143 (8)0.0168 (9)−0.0034 (6)−0.0019 (7)0.0021 (6)
C10.0144 (9)0.0138 (8)0.0118 (9)−0.0058 (7)0.0011 (7)0.0037 (7)
C20.0129 (9)0.0102 (8)0.0102 (9)−0.0029 (6)−0.0004 (7)0.0014 (6)
C30.0139 (9)0.0128 (8)0.0164 (10)0.0011 (7)0.0013 (7)0.0016 (7)
C40.0195 (9)0.0109 (8)0.0131 (9)−0.0004 (7)0.0024 (7)−0.0036 (7)
C50.0163 (9)0.0117 (8)0.0110 (9)−0.0045 (7)−0.0010 (7)0.0016 (7)
C60.0130 (9)0.0127 (8)0.0149 (10)0.0003 (6)0.0003 (7)0.0019 (7)
C70.0155 (9)0.0106 (8)0.0117 (9)−0.0016 (6)0.0014 (7)−0.0011 (7)
C80.0205 (10)0.0174 (9)0.0136 (10)−0.0034 (7)−0.0032 (8)−0.0003 (7)
C90.0161 (9)0.0142 (9)0.0124 (9)0.0014 (6)0.0000 (7)−0.0001 (7)
C100.0148 (9)0.0147 (9)0.0149 (10)0.0004 (7)−0.0004 (7)−0.0015 (7)
C110.0152 (9)0.0110 (8)0.0137 (10)0.0005 (6)0.0028 (7)−0.0014 (7)
C120.0200 (10)0.0130 (8)0.0116 (9)−0.0013 (7)0.0012 (7)0.0014 (7)
C130.0149 (9)0.0164 (9)0.0131 (9)−0.0001 (7)−0.0013 (7)0.0001 (7)
C140.0133 (9)0.0120 (8)0.0183 (10)0.0011 (7)0.0027 (7)−0.0012 (7)
Cu1—O21.9192 (13)C4—H40.9300
Cu1—O2i1.9192 (13)C5—C41.401 (3)
Cu1—N12.0562 (15)C5—C61.396 (3)
Cu1—N1i2.0562 (15)C5—C81.504 (3)
O1—C11.249 (2)C6—H60.9300
O2—C11.287 (2)C7—C61.382 (3)
O3—C141.228 (2)C7—H70.9300
O4—H410.77 (3)C8—H8A0.9600
O4—H420.78 (3)C8—H8B0.9600
N1—C91.350 (2)C8—H8C0.9600
N1—C131.345 (2)C9—H90.9300
N2—C141.341 (2)C10—C91.381 (3)
N2—H210.82 (2)C10—C111.395 (3)
N2—H220.86 (2)C10—H100.9300
C2—C11.495 (3)C11—C121.398 (3)
C2—C31.397 (2)C11—C141.516 (2)
C2—C71.398 (3)C12—C131.388 (2)
C3—C41.383 (3)C12—H120.9300
C3—H30.9300C13—H130.9300
O2i—Cu1—O2180.00 (4)C7—C6—C5121.11 (17)
O2—Cu1—N189.67 (6)C7—C6—H6119.4
O2i—Cu1—N190.33 (6)C2—C7—H7119.8
O2—Cu1—N1i90.33 (6)C6—C7—C2120.40 (17)
O2i—Cu1—N1i89.67 (6)C6—C7—H7119.8
N1—Cu1—N1i180.00 (10)C5—C8—H8A109.5
C1—O2—Cu1113.26 (12)C5—C8—H8B109.5
H42—O4—H41103 (3)C5—C8—H8C109.5
C9—N1—Cu1122.91 (12)H8A—C8—H8B109.5
C13—N1—Cu1120.10 (12)H8A—C8—H8C109.5
C13—N1—C9116.85 (16)H8B—C8—H8C109.5
C14—N2—H21117.9 (16)N1—C9—C10123.05 (17)
C14—N2—H22123.8 (14)N1—C9—H9118.5
H22—N2—H21118 (2)C10—C9—H9118.5
O1—C1—O2122.72 (18)C9—C10—C11119.75 (17)
O1—C1—C2121.14 (17)C9—C10—H10120.1
O2—C1—C2116.10 (16)C11—C10—H10120.1
C3—C2—C1120.47 (16)C10—C11—C12117.82 (17)
C3—C2—C7119.07 (17)C10—C11—C14117.32 (16)
C7—C2—C1120.42 (16)C12—C11—C14124.85 (17)
C2—C3—H3120.0C11—C12—H12120.7
C4—C3—C2120.03 (17)C13—C12—C11118.51 (17)
C4—C3—H3120.0C13—C12—H12120.7
C3—C4—C5121.34 (17)N1—C13—C12124.04 (17)
C3—C4—H4119.3N1—C13—H13118.0
C5—C4—H4119.3C12—C13—H13118.0
C4—C5—C8120.56 (16)O3—C14—N2122.56 (17)
C6—C5—C4118.05 (17)O3—C14—C11119.40 (17)
C6—C5—C8121.39 (17)N2—C14—C11118.03 (17)
C5—C6—H6119.4
O2i—Cu1—N1—C9161.86 (14)C1—C2—C7—C6−177.34 (16)
O2—Cu1—N1—C9−18.14 (14)C3—C2—C7—C60.2 (3)
O2i—Cu1—N1—C13−22.59 (14)C2—C3—C4—C5−0.7 (3)
O2—Cu1—N1—C13157.41 (14)C6—C5—C4—C30.2 (3)
N1—Cu1—O2—C1−76.89 (12)C8—C5—C4—C3179.96 (17)
N1i—Cu1—O2—C1103.11 (12)C4—C5—C6—C70.5 (3)
Cu1—O2—C1—O1−11.8 (2)C8—C5—C6—C7−179.23 (16)
Cu1—O2—C1—C2166.15 (11)C2—C7—C6—C5−0.7 (3)
Cu1—N1—C9—C10176.28 (14)C11—C10—C9—N1−0.8 (3)
C13—N1—C9—C100.6 (3)C9—C10—C11—C120.5 (3)
Cu1—N1—C13—C12−175.86 (14)C9—C10—C11—C14−178.32 (16)
C9—N1—C13—C120.0 (3)C10—C11—C12—C130.0 (3)
C3—C2—C1—O1−13.1 (3)C14—C11—C12—C13178.73 (17)
C7—C2—C1—O1164.51 (16)C10—C11—C14—O34.5 (2)
C3—C2—C1—O2169.00 (16)C10—C11—C14—N2−174.41 (17)
C7—C2—C1—O2−13.4 (2)C12—C11—C14—O3−174.24 (18)
C7—C2—C3—C40.5 (3)C12—C11—C14—N26.9 (3)
C1—C2—C3—C4178.05 (16)C11—C12—C13—N1−0.3 (3)
D—H···AD—HH···AD···AD—H···A
N2—H21···O1ii0.82 (2)2.46 (2)3.283 (2)177 (2)
N2—H22···O4iii0.86 (2)2.14 (2)2.983 (2)171 (2)
O4—H41···O30.77 (3)2.10 (3)2.866 (2)178 (3)
O4—H42···O1iv0.78 (3)2.04 (3)2.813 (2)173 (3)
C3—H3···O3v0.932.483.324 (2)151
C10—H10···O1iv0.932.503.242 (2)137
C12—H12···O4iii0.932.343.253 (2)169
Table 1

Hydrogen-bond geometry (Å, °)

D—H⋯AD—HH⋯ADAD—H⋯A
N2—H21⋯O1i0.82 (2)2.46 (2)3.283 (2)177 (2)
N2—H22⋯O4ii0.86 (2)2.14 (2)2.983 (2)171 (2)
O4—H41⋯O30.77 (3)2.10 (3)2.866 (2)178 (3)
O4—H42⋯O1iii0.78 (3)2.04 (3)2.813 (2)173 (3)
C3—H3⋯O3iv0.932.483.324 (2)151
C10—H10⋯O1iii0.932.503.242 (2)137
C12—H12⋯O4ii0.932.343.253 (2)169

Symmetry codes: (i) ; (ii) ; (iii) ; (iv) .

  7 in total

1.  A short history of SHELX.

Authors:  George M Sheldrick
Journal:  Acta Crystallogr A       Date:  2007-12-21       Impact factor: 2.290

2.  Some aspects of copper metabolism in pellagra.

Authors:  K A Krishnamachari
Journal:  Am J Clin Nutr       Date:  1974-02       Impact factor: 7.045

3.  Tetra-kis(μ-4-methyl-benzoato-κO:O')bis-[(isonicotinamide-κN)copper(II)].

Authors:  Hacali Necefoğlu; Efdal Cimen; Barış Tercan; Hakan Dal; Tuncer Hökelek
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2010-02-27

4.  Diaqua-bis(2-chloro-benzoato-κO)bis-(N,N-diethyl-nicotinamide-κN)manganese(II).

Authors:  T Hökelek; H Dal; B Tercan; F E Ozbek; H Necefoğlu
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2009-04-10

5.  Diaqua-bis(2-bromo-benzoato-κO)bis-(nicotinamide-κN)zinc(II).

Authors:  Tuncer Hökelek; Hakan Dal; Barış Tercan; F Elif Ozbek; Hacali Necefoğlu
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2009-04-30

6.  Diaqua-bis(2-chloro-benzoato-κO)bis-(nicotinamide-κN)nickel(II).

Authors:  Tuncer Hökelek; Hakan Dal; Barış Tercan; F Elif Ozbek; Hacali Necefoğlu
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2009-03-31

7.  Diaqua-bis(4-methyl-benzoato-κO)bis-(nicotinamide-κN)nickel(II).

Authors:  Hacali Necefoğlu; Efdal Cimen; Barış Tercan; Emel Ermiş; Tuncer Hökelek
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2010-03-03
  7 in total
  2 in total

1.  Bis(4-meth-oxy-benzoato)-κO,O';κO-bis-(nicotinamide-κN)zinc(II).

Authors:  Tuncer Hökelek; Güner Saka; Barış Tercan; Erdinç Tenlik; Hacali Necefoğlu
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2010-08-21

2.  Bis-(4-fluoro-benzoato)-κO,O';κO-(4-fluoro-benzoic acid-κO)bis-(nico-tinamide-κN)copper(II).

Authors:  Hacali Necefoğlu; Füreya Elif Ozbek; Vijdan Oztürk; Barış Tercan; Tuncer Hökelek
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2011-06-11
  2 in total

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