Literature DB >> 22058788

(E)-2-(3-Cinnamoyl-thio-ureido)acetic acid dimethyl sulfoxide disolvate.

Ibrahim N Hassan, Wan Ramli Wan Daud, Bohari M Yamin, Mohammad B Kassim.   

Abstract

In the title compound, C(12)H(12)N(2)O(3)S·2C(2)H(6)OS, the acetic acid and cinnamoyl groups adopt Z and E configurations, respectively, with respect to the thio group about the C-N bonds. The components of the asymmetric unit are connected by N-H⋯O and O-H⋯O hydrogen bonds and in the crystal weak inter-molecular C-H⋯O and C-H⋯S hydrogen bonds further connect the components into chains along the b axis. In the main mol-ecule, an intra-molecular N-H⋯O hydrogen bond is also present.

Entities:  

Year:  2011        PMID: 22058788      PMCID: PMC3201284          DOI: 10.1107/S1600536811036750

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For related structures, see: Hassan et al. (2009 ▶, 2010a ▶,b ▶,c ▶, 2011 ▶); Nasir et al. (2011 ▶). For the synthesis, see: Hassan et al. (2008 ▶). For standard bond-length data, see: Allen et al. (1987 ▶).

Experimental

Crystal data

C12H12N2O3S·2C2H6OS M = 420.55 Triclinic, a = 7.327 (3) Å b = 12.064 (5) Å c = 13.691 (6) Å α = 65.794 (8)° β = 75.603 (9)° γ = 85.484 (9)° V = 1068.6 (8) Å3 Z = 2 Mo Kα radiation μ = 0.37 mm−1 T = 298 K 0.42 × 0.21 × 0.18 mm

Data collection

Bruker SMART APEX CCD diffractometer Absorption correction: multi-scan (SADABS; Sheldrick, 1996 ▶) T min = 0.859, T max = 0.936 10964 measured reflections 3774 independent reflections 2650 reflections with I > 2σ(I) R int = 0.046

Refinement

R[F 2 > 2σ(F 2)] = 0.085 wR(F 2) = 0.251 S = 1.06 3774 reflections 240 parameters H-atom parameters constrained Δρmax = 0.72 e Å−3 Δρmin = −0.25 e Å−3 Data collection: SMART (Bruker, 2000 ▶); cell refinement: SAINT (Bruker, 2000 ▶); data reduction: SAINT; program(s) used to solve structure: SHELXS97 (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: ORTEPIII (Burnett & Johnson, 1996 ▶) and SHELXTL (Sheldrick, 2008 ▶); software used to prepare material for publication: SHELXTL and PLATON (Spek, 2009 ▶). Crystal structure: contains datablock(s) global, I. DOI: 10.1107/S1600536811036750/lh5324sup1.cif Structure factors: contains datablock(s) I. DOI: 10.1107/S1600536811036750/lh5324Isup2.hkl Supplementary material file. DOI: 10.1107/S1600536811036750/lh5324Isup3.cml Additional supplementary materials: crystallographic information; 3D view; checkCIF report
C12H12N2O3S·2C2H6OSZ = 2
Mr = 420.55F(000) = 444
Triclinic, P1Dx = 1.307 Mg m3
Hall symbol: -P 1Melting point: 407 K
a = 7.327 (3) ÅMo Kα radiation, λ = 0.71073 Å
b = 12.064 (5) Åθ = 1.7–25.0°
c = 13.691 (6) ŵ = 0.37 mm1
α = 65.794 (8)°T = 298 K
β = 75.603 (9)°Block, colourless
γ = 85.484 (9)°0.42 × 0.21 × 0.18 mm
V = 1068.6 (8) Å3
Bruker SMART APEX CCD diffractometer3774 independent reflections
Radiation source: fine-focus sealed tube2650 reflections with I > 2σ(I)
graphiteRint = 0.046
ω scansθmax = 25.0°, θmin = 1.7°
Absorption correction: multi-scan (SADABS; Sheldrick, 1996)h = −8→8
Tmin = 0.859, Tmax = 0.936k = −14→14
10964 measured reflectionsl = −16→16
Refinement on F2Primary atom site location: structure-invariant direct methods
Least-squares matrix: fullSecondary atom site location: difference Fourier map
R[F2 > 2σ(F2)] = 0.085Hydrogen site location: inferred from neighbouring sites
wR(F2) = 0.251H-atom parameters constrained
S = 1.06w = 1/[σ2(Fo2) + (0.1544P)2 + 0.4047P] where P = (Fo2 + 2Fc2)/3
3774 reflections(Δ/σ)max < 0.001
240 parametersΔρmax = 0.72 e Å3
0 restraintsΔρmin = −0.25 e Å3
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/Ueq
S10.4518 (2)0.84669 (10)0.40846 (9)0.0689 (5)
S20.3003 (3)1.64039 (11)0.16460 (11)0.0800 (6)
S30.66629 (18)0.58770 (10)0.36710 (9)0.0580 (4)
O10.6554 (5)1.1084 (3)0.0515 (2)0.0642 (10)
O20.4605 (6)1.3125 (3)0.1829 (3)0.0754 (11)
O30.2971 (6)1.3022 (3)0.3467 (3)0.0697 (11)
H3A0.30081.37650.31470.105*
O40.2660 (7)1.5335 (3)0.2747 (3)0.0836 (13)
O50.7343 (5)0.6780 (3)0.2502 (2)0.0626 (9)
N10.6120 (5)0.9232 (3)0.1959 (3)0.0457 (9)
H1A0.63090.84700.21280.055*
N20.4931 (5)1.0710 (3)0.2566 (3)0.0495 (9)
H2A0.53271.12100.18910.059*
C10.9539 (8)0.8304 (6)−0.1493 (5)0.0762 (16)
H10.91220.7733−0.07740.091*
C21.0432 (9)0.7939 (8)−0.2298 (6)0.097 (2)
H21.06350.7115−0.21180.116*
C31.1037 (10)0.8736 (11)−0.3359 (8)0.116 (3)
H31.16230.8466−0.39030.139*
C41.0773 (10)0.9927 (10)−0.3607 (5)0.105 (3)
H41.11971.0486−0.43310.126*
C50.9890 (8)1.0335 (7)−0.2812 (4)0.0843 (18)
H50.97241.1163−0.29980.101*
C60.9249 (7)0.9513 (5)−0.1739 (4)0.0648 (13)
C70.8281 (7)0.9974 (5)−0.0920 (4)0.0618 (13)
H7A0.80611.0803−0.11860.074*
C80.7671 (7)0.9352 (4)0.0163 (4)0.0608 (13)
H8A0.78110.85140.04750.073*
C90.6774 (6)0.9993 (4)0.0869 (3)0.0492 (11)
C100.5195 (6)0.9548 (4)0.2819 (3)0.0444 (10)
C110.4015 (7)1.1193 (4)0.3357 (3)0.0491 (11)
H11A0.47141.09910.39210.059*
H11B0.27541.08380.37110.059*
C120.3910 (6)1.2548 (4)0.2786 (3)0.0492 (11)
C130.1632 (10)1.6099 (7)0.0894 (5)0.106 (2)
H13A0.18321.52810.09480.159*
H13B0.19921.66570.01340.159*
H13C0.03241.61910.11880.159*
C140.5210 (8)1.6206 (5)0.0879 (4)0.0731 (15)
H14A0.61801.63010.12010.110*
H14B0.54041.68030.01340.110*
H14C0.52541.54070.08840.110*
C150.8192 (9)0.6064 (6)0.4402 (4)0.0790 (16)
H15A0.94730.60110.40330.118*
H15B0.79280.54380.51360.118*
H15C0.80110.68460.44360.118*
C160.7496 (11)0.4446 (5)0.3663 (5)0.093 (2)
H16A0.68820.42290.32200.139*
H16B0.72190.38340.44030.139*
H16C0.88330.45070.33600.139*
U11U22U33U12U13U23
S10.1061 (11)0.0398 (7)0.0338 (6)0.0062 (6)0.0081 (6)−0.0032 (5)
S20.1332 (14)0.0414 (7)0.0428 (7)0.0122 (7)−0.0026 (7)−0.0070 (6)
S30.0743 (8)0.0416 (6)0.0401 (6)0.0072 (5)−0.0023 (5)−0.0063 (5)
O10.101 (3)0.0401 (17)0.0329 (16)0.0086 (16)−0.0024 (16)−0.0054 (13)
O20.125 (3)0.0399 (17)0.0402 (19)0.0064 (18)0.0049 (19)−0.0102 (15)
O30.115 (3)0.0444 (18)0.0399 (17)0.0144 (19)−0.0037 (18)−0.0176 (15)
O40.148 (4)0.0432 (19)0.0376 (18)0.017 (2)0.000 (2)−0.0100 (15)
O50.100 (3)0.0400 (16)0.0360 (17)0.0079 (16)−0.0103 (16)−0.0081 (14)
N10.069 (2)0.0281 (16)0.0323 (17)0.0028 (15)−0.0075 (16)−0.0075 (14)
N20.071 (2)0.0331 (18)0.0317 (18)0.0024 (16)−0.0019 (16)−0.0070 (14)
C10.076 (4)0.087 (4)0.063 (3)0.011 (3)−0.005 (3)−0.036 (3)
C20.079 (4)0.133 (6)0.102 (6)0.017 (4)−0.012 (4)−0.079 (5)
C30.078 (5)0.205 (10)0.105 (6)−0.006 (6)0.001 (4)−0.114 (7)
C40.087 (5)0.180 (9)0.043 (3)−0.043 (5)0.013 (3)−0.049 (5)
C50.083 (4)0.105 (5)0.041 (3)−0.022 (3)0.010 (3)−0.016 (3)
C60.061 (3)0.083 (4)0.048 (3)0.002 (3)−0.005 (2)−0.028 (3)
C70.080 (3)0.057 (3)0.040 (2)0.002 (2)−0.005 (2)−0.016 (2)
C80.080 (3)0.044 (3)0.046 (3)0.002 (2)−0.002 (2)−0.014 (2)
C90.066 (3)0.038 (2)0.034 (2)0.0030 (19)−0.004 (2)−0.0099 (18)
C100.058 (3)0.036 (2)0.035 (2)0.0030 (18)−0.0094 (19)−0.0114 (17)
C110.065 (3)0.044 (2)0.030 (2)0.004 (2)−0.0035 (19)−0.0121 (18)
C120.068 (3)0.044 (2)0.035 (2)0.006 (2)−0.011 (2)−0.0163 (19)
C130.091 (5)0.121 (6)0.063 (4)−0.011 (4)−0.010 (3)0.004 (4)
C140.095 (4)0.069 (3)0.042 (3)−0.011 (3)−0.011 (3)−0.010 (2)
C150.097 (4)0.079 (4)0.049 (3)0.020 (3)−0.015 (3)−0.019 (3)
C160.130 (5)0.037 (3)0.076 (4)0.007 (3)0.008 (4)−0.007 (3)
S1—C101.664 (4)C4—C51.372 (9)
S2—O41.506 (3)C4—H40.9300
S2—C141.754 (6)C5—C61.378 (7)
S2—C131.757 (7)C5—H50.9300
S3—O51.501 (3)C6—C71.457 (7)
S3—C151.758 (6)C7—C81.331 (6)
S3—C161.789 (6)C7—H7A0.9300
O1—C91.215 (5)C8—C91.477 (6)
O2—C121.199 (5)C8—H8A0.9300
O3—C121.313 (5)C11—C121.500 (6)
O3—H3A0.8200C11—H11A0.9700
N1—C91.375 (5)C11—H11B0.9700
N1—C101.386 (5)C13—H13A0.9600
N1—H1A0.8600C13—H13B0.9600
N2—C101.310 (5)C13—H13C0.9600
N2—C111.434 (5)C14—H14A0.9600
N2—H2A0.8600C14—H14B0.9600
C1—C21.353 (8)C14—H14C0.9600
C1—C61.368 (8)C15—H15A0.9600
C1—H10.9300C15—H15B0.9600
C2—C31.353 (12)C15—H15C0.9600
C2—H20.9300C16—H16A0.9600
C3—C41.344 (13)C16—H16B0.9600
C3—H30.9300C16—H16C0.9600
O4—S2—C14106.8 (3)O1—C9—C8123.3 (4)
O4—S2—C13105.6 (3)N1—C9—C8113.7 (4)
C14—S2—C1397.0 (3)N2—C10—N1116.2 (3)
O5—S3—C15105.7 (3)N2—C10—S1124.2 (3)
O5—S3—C16104.9 (2)N1—C10—S1119.6 (3)
C15—S3—C1697.7 (3)N2—C11—C12109.5 (3)
C12—O3—H3A109.5N2—C11—H11A109.8
C9—N1—C10127.7 (3)C12—C11—H11A109.8
C9—N1—H1A116.1N2—C11—H11B109.8
C10—N1—H1A116.1C12—C11—H11B109.8
C10—N2—C11123.4 (3)H11A—C11—H11B108.2
C10—N2—H2A118.3O2—C12—O3124.4 (4)
C11—N2—H2A118.3O2—C12—C11124.1 (4)
C2—C1—C6119.9 (6)O3—C12—C11111.5 (4)
C2—C1—H1120.0S2—C13—H13A109.5
C6—C1—H1120.0S2—C13—H13B109.5
C1—C2—C3122.0 (8)H13A—C13—H13B109.5
C1—C2—H2119.0S2—C13—H13C109.5
C3—C2—H2119.0H13A—C13—H13C109.5
C4—C3—C2118.5 (6)H13B—C13—H13C109.5
C4—C3—H3120.8S2—C14—H14A109.5
C2—C3—H3120.8S2—C14—H14B109.5
C3—C4—C5121.3 (7)H14A—C14—H14B109.5
C3—C4—H4119.4S2—C14—H14C109.5
C5—C4—H4119.4H14A—C14—H14C109.5
C4—C5—C6119.7 (7)H14B—C14—H14C109.5
C4—C5—H5120.1S3—C15—H15A109.5
C6—C5—H5120.1S3—C15—H15B109.5
C1—C6—C5118.5 (5)H15A—C15—H15B109.5
C1—C6—C7123.1 (5)S3—C15—H15C109.5
C5—C6—C7118.4 (5)H15A—C15—H15C109.5
C8—C7—C6127.9 (5)H15B—C15—H15C109.5
C8—C7—H7A116.0S3—C16—H16A109.5
C6—C7—H7A116.0S3—C16—H16B109.5
C7—C8—C9119.9 (4)H16A—C16—H16B109.5
C7—C8—H8A120.0S3—C16—H16C109.5
C9—C8—H8A120.0H16A—C16—H16C109.5
O1—C9—N1122.9 (4)H16B—C16—H16C109.5
C6—C1—C2—C3−0.9 (10)C10—N1—C9—O1−2.1 (8)
C1—C2—C3—C41.5 (12)C10—N1—C9—C8−179.0 (4)
C2—C3—C4—C5−0.8 (12)C7—C8—C9—O1−0.2 (8)
C3—C4—C5—C6−0.3 (11)C7—C8—C9—N1176.6 (4)
C2—C1—C6—C5−0.2 (9)C11—N2—C10—N1−179.4 (4)
C2—C1—C6—C7179.3 (6)C11—N2—C10—S1−0.1 (7)
C4—C5—C6—C10.8 (9)C9—N1—C10—N2−0.9 (7)
C4—C5—C6—C7−178.7 (6)C9—N1—C10—S1179.8 (4)
C1—C6—C7—C85.5 (9)C10—N2—C11—C12−178.7 (4)
C5—C6—C7—C8−175.0 (6)N2—C11—C12—O2−4.4 (7)
C6—C7—C8—C9177.8 (5)N2—C11—C12—O3175.8 (4)
D—H···AD—HH···AD···AD—H···A
N1—H1A···O50.862.022.867 (5)167.
N2—H2A···O10.861.942.625 (4)136.
O3—H3A···O40.821.762.562 (5)166.
C14—H14C···O20.962.543.423 (8)153
C14—H14A···O5i0.962.433.319 (7)154
C15—H15B···O4ii0.962.583.468 (7)153
C16—H16B···S1iii0.962.853.702 (7)148
Table 1

Hydrogen-bond geometry (Å, °)

D—H⋯AD—HH⋯ADAD—H⋯A
N1—H1A⋯O50.862.022.867 (5)167
N2—H2A⋯O10.861.942.625 (4)136
O3—H3A⋯O40.821.762.562 (5)166
C14—H14C⋯O20.962.543.423 (8)153
C14—H14A⋯O5i0.962.433.319 (7)154
C15—H15B⋯O4ii0.962.583.468 (7)153
C16—H16B⋯S1iii0.962.853.702 (7)148

Symmetry codes: (i) ; (ii) ; (iii) .

  9 in total

1.  A short history of SHELX.

Authors:  George M Sheldrick
Journal:  Acta Crystallogr A       Date:  2007-12-21       Impact factor: 2.290

2.  Methyl 2-(3-benzoyl-thio-ureido)acetate.

Authors:  Ibrahim N Hassan; Bohari M Yamin; Mohammad B Kassim
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2009-11-14

3.  (E)-Methyl 2-(3-cinnamoyl-thio-ureido)acetate.

Authors:  Ibrahim N Hassan; Bohari M Yamin; Mohammad B Kassim
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2010-08-11

4.  (E)-Ethyl 2-(3-cinnamoyl-thio-ureido)acetate.

Authors:  Ibrahim N Hassan; Bohari M Yamin; Mohammad B Kassim
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2010-10-09

5.  Ethyl 2-(3-benzoyl-thio-ureido)acetate.

Authors:  Ibrahim N Hassan; Bohari M Yamin; Mohammad B Kassim
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2008-08-09

6.  Cinnamoyl-thio-urea.

Authors:  Ibrahim N Hassan; Bohari M Yamin; Mohammad B Kassim
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2010-10-13

7.  Methyl 3-(3-benzoyl-thio-ureido)propano-ate.

Authors:  Ibrahim N Hassan; Chong Yan Yi; Mohammad B Kassim
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2011-03-05

8.  1,1-Dibenzyl-3-(4-fluoro-benzo-yl)thio-urea.

Authors:  Mohd Faizal Md Nasir; Ibrahim N Hassan; Wan Ramli Wan Daud; Bohari M Yamin; Mohammad B Kassim
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2011-07-09

9.  Structure validation in chemical crystallography.

Authors:  Anthony L Spek
Journal:  Acta Crystallogr D Biol Crystallogr       Date:  2009-01-20
  9 in total

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