Literature DB >> 20936833

On the performance of spin diffusion NMR techniques in oriented solids: prospects for resonance assignments and distance measurements from separated local field experiments.

Nathaniel J Traaseth1, T Gopinath, Gianluigi Veglia.   

Abstract

NMR spin diffusion experiments have the potential to provide both resonance assignment and internuclear distances for protein structure determination in oriented solid-state NMR. In this paper, we compared the efficiencies of three spin diffusion experiments: proton-driven spin diffusion (PDSD), cross-relaxation-driven spin diffusion (CRDSD), and proton-mediated proton transfer (PMPT). As model systems for oriented proteins, we used single crystals of N-acetyl-L-(15)N-leucine (NAL) and N-acetyl-L-(15)N-valyl-L-(15)N-leucine (NAVL) to probe long and short distances, respectively. We demonstrate that, for short (15)N/(15)N distances such as those found in NAVL (3.3 Å), the PDSD mechanism gives the most intense cross-peaks, while, for longer distances (>6.5 Å), the CRDSD and PMPT experiments are more efficient. The PDSD was highly inefficient for transferring magnetization across distances greater than 6.5 Å (NAL crystal sample), due to small (15)N/(15)N dipolar couplings (<4.5 Hz). Interestingly, the mismatched Hartmann-Hahn condition present in the PMPT experiment gave more intense cross-peaks for lower (1)H and (15)N RF spinlock amplitudes (32 and 17 kHz, respectively) rather than higher values (55 and 50 kHz), suggesting a more complex magnetization transfer mechanism. Numerical simulations are in good agreement with the experimental findings, suggesting a combined PMPT and CRDSD effect. We conclude that, in order to assign SLF spectra and measure short- and long-range distances, the combined use of homonuclear correlation spectra, such as the ones surveyed in this work, are necessary.

Entities:  

Mesh:

Substances:

Year:  2010        PMID: 20936833      PMCID: PMC3000634          DOI: 10.1021/jp105718r

Source DB:  PubMed          Journal:  J Phys Chem B        ISSN: 1520-5207            Impact factor:   2.991


  48 in total

1.  Structural fitting of PISEMA spectra of aligned proteins.

Authors:  Alexander A Nevzorov; Stanley J Opella
Journal:  J Magn Reson       Date:  2003-01       Impact factor: 2.229

2.  Dipolar waves map the structure and topology of helices in membrane proteins.

Authors:  Michael F Mesleh; Sangwon Lee; Gianluigi Veglia; David S Thiriot; Francesca M Marassi; Stanley J Opella
Journal:  J Am Chem Soc       Date:  2003-07-23       Impact factor: 15.419

3.  Proton assisted insensitive nuclei cross polarization.

Authors:  Józef R Lewandowski; Gaël De Paëpe; Robert G Griffin
Journal:  J Am Chem Soc       Date:  2007-01-31       Impact factor: 15.419

Review 4.  Structure elucidation of membrane-associated peptides and proteins in oriented bilayers by solid-state NMR spectroscopy.

Authors:  Akira Naito
Journal:  Solid State Nucl Magn Reson       Date:  2009-07-08       Impact factor: 2.293

5.  Spectroscopic validation of the pentameric structure of phospholamban.

Authors:  Nathaniel J Traaseth; Raffaello Verardi; Kurt D Torgersen; Christine B Karim; David D Thomas; Gianluigi Veglia
Journal:  Proc Natl Acad Sci U S A       Date:  2007-09-05       Impact factor: 11.205

6.  Towards high-resolution solid-state NMR on large uniformly 15N- and [13C,15N]-labeled membrane proteins in oriented lipid bilayers.

Authors:  Thomas Vosegaard; Niels Chr Nielsen
Journal:  J Biomol NMR       Date:  2002-03       Impact factor: 2.835

7.  Two-dimensional solid-state NMR reveals two topologies of sarcolipin in oriented lipid bilayers.

Authors:  Jarrod J Buffy; Nathaniel J Traaseth; Alessandro Mascioni; Peter L Gor'kov; Eduard Y Chekmenev; William W Brey; Gianluigi Veglia
Journal:  Biochemistry       Date:  2006-09-12       Impact factor: 3.162

8.  Solid-state NMR reveals structural and dynamical properties of a membrane-anchored electron-carrier protein, cytochrome b5.

Authors:  Ulrich H N Dürr; Kazutoshi Yamamoto; Sang-Choul Im; Lucy Waskell; Ayyalusamy Ramamoorthy
Journal:  J Am Chem Soc       Date:  2007-05-09       Impact factor: 15.419

9.  Improved pulse sequences for pure exchange solid-state NMR spectroscopy.

Authors:  Thomas Vosegaard; Niels C Nielsen
Journal:  Magn Reson Chem       Date:  2004-02       Impact factor: 2.447

Review 10.  Structural and dynamic basis of phospholamban and sarcolipin inhibition of Ca(2+)-ATPase.

Authors:  Nathaniel J Traaseth; Kim N Ha; Raffaello Verardi; Lei Shi; Jarrod J Buffy; Larry R Masterson; Gianluigi Veglia
Journal:  Biochemistry       Date:  2007-12-15       Impact factor: 3.162

View more
  15 in total

1.  Multidimensional oriented solid-state NMR experiments enable the sequential assignment of uniformly 15N labeled integral membrane proteins in magnetically aligned lipid bilayers.

Authors:  Kaustubh R Mote; T Gopinath; Nathaniel J Traaseth; Jason Kitchen; Peter L Gor'kov; William W Brey; Gianluigi Veglia
Journal:  J Biomol NMR       Date:  2011-11       Impact factor: 2.835

2.  3D MAS NMR Experiment Utilizing Through-Space 15N-15N Correlations.

Authors:  Kevin J Donovan; Robert Silvers; Sara Linse; Robert G Griffin
Journal:  J Am Chem Soc       Date:  2017-05-03       Impact factor: 15.419

3.  A spectroscopic assignment technique for membrane proteins reconstituted in magnetically aligned bicelles.

Authors:  Wenxing Tang; Robert W Knox; Alexander A Nevzorov
Journal:  J Biomol NMR       Date:  2012-09-14       Impact factor: 2.835

4.  NMR Spectroscopy Approach to Study the Structure, Orientation, and Mechanism of the Multidrug Exporter EmrE.

Authors:  Maureen Leninger; Nathaniel J Traaseth
Journal:  Methods Mol Biol       Date:  2018

5.  Mechanism of dilute-spin-exchange in solid-state NMR.

Authors:  George J Lu; Stanley J Opella
Journal:  J Chem Phys       Date:  2014-03-28       Impact factor: 3.488

6.  Application of paramagnetic relaxation enhancements to accelerate the acquisition of 2D and 3D solid-state NMR spectra of oriented membrane proteins.

Authors:  Songlin Wang; T Gopinath; Gianluigi Veglia
Journal:  Methods       Date:  2017-12-22       Impact factor: 3.608

7.  Resonance assignments of a membrane protein in phospholipid bilayers by combining multiple strategies of oriented sample solid-state NMR.

Authors:  George J Lu; Stanley J Opella
Journal:  J Biomol NMR       Date:  2013-12-20       Impact factor: 2.835

8.  Simultaneous acquisition of 2D and 3D solid-state NMR experiments for sequential assignment of oriented membrane protein samples.

Authors:  T Gopinath; Kaustubh R Mote; Gianluigi Veglia
Journal:  J Biomol NMR       Date:  2015-03-07       Impact factor: 2.835

9.  Improved Resolution in Dipolar NMR Spectra Using Constant Time Evolution PISEMA Experiment.

Authors:  T Gopinath; Gianluigi Veglia
Journal:  Chem Phys Lett       Date:  2010-07-09       Impact factor: 2.328

10.  Experiments optimized for magic angle spinning and oriented sample solid-state NMR of proteins.

Authors:  Bibhuti B Das; Eugene C Lin; Stanley J Opella
Journal:  J Phys Chem B       Date:  2013-10-07       Impact factor: 2.991

View more

北京卡尤迪生物科技股份有限公司 © 2022-2023.