Literature DB >> 21976256

Multidimensional oriented solid-state NMR experiments enable the sequential assignment of uniformly 15N labeled integral membrane proteins in magnetically aligned lipid bilayers.

Kaustubh R Mote1, T Gopinath, Nathaniel J Traaseth, Jason Kitchen, Peter L Gor'kov, William W Brey, Gianluigi Veglia.   

Abstract

Oriented solid-state NMR is the most direct methodology to obtain the orientation of membrane proteins with respect to the lipid bilayer. The method consists of measuring (1)H-(15)N dipolar couplings (DC) and (15)N anisotropic chemical shifts (CSA) for membrane proteins that are uniformly aligned with respect to the membrane bilayer. A significant advantage of this approach is that tilt and azimuthal (rotational) angles of the protein domains can be directly derived from analytical expression of DC and CSA values, or, alternatively, obtained by refining protein structures using these values as harmonic restraints in simulated annealing calculations. The Achilles' heel of this approach is the lack of suitable experiments for sequential assignment of the amide resonances. In this Article, we present a new pulse sequence that integrates proton driven spin diffusion (PDSD) with sensitivity-enhanced PISEMA in a 3D experiment ([(1)H,(15)N]-SE-PISEMA-PDSD). The incorporation of 2D (15)N/(15)N spin diffusion experiments into this new 3D experiment leads to the complete and unambiguous assignment of the (15)N resonances. The feasibility of this approach is demonstrated for the membrane protein sarcolipin reconstituted in magnetically aligned lipid bicelles. Taken with low electric field probe technology, this approach will propel the determination of sequential assignment as well as structure and topology of larger integral membrane proteins in aligned lipid bilayers. © Springer Science+Business Media B.V. 2011

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Year:  2011        PMID: 21976256     DOI: 10.1007/s10858-011-9571-8

Source DB:  PubMed          Journal:  J Biomol NMR        ISSN: 0925-2738            Impact factor:   2.835


  50 in total

1.  Structure determination of a membrane protein with two trans-membrane helices in aligned phospholipid bicelles by solid-state NMR spectroscopy.

Authors:  Anna A De Angelis; Stanley C Howell; Alexander A Nevzorov; Stanley J Opella
Journal:  J Am Chem Soc       Date:  2006-09-20       Impact factor: 15.419

2.  Bicelle samples for solid-state NMR of membrane proteins.

Authors:  Anna A De Angelis; Stanley J Opella
Journal:  Nat Protoc       Date:  2007       Impact factor: 13.491

3.  High-resolution conformation of gramicidin A in a lipid bilayer by solid-state NMR.

Authors:  R R Ketchem; W Hu; T A Cross
Journal:  Science       Date:  1993-09-10       Impact factor: 47.728

4.  NMRPipe: a multidimensional spectral processing system based on UNIX pipes.

Authors:  F Delaglio; S Grzesiek; G W Vuister; G Zhu; J Pfeifer; A Bax
Journal:  J Biomol NMR       Date:  1995-11       Impact factor: 2.835

5.  Triton X-100 as the "short-chain lipid" improves the magnetic alignment and stability of membrane proteins in phosphatidylcholine bilayers for oriented-sample solid-state NMR spectroscopy.

Authors:  Sang Ho Park; Stanley J Opella
Journal:  J Am Chem Soc       Date:  2010-09-15       Impact factor: 15.419

6.  Two-dimensional solid-state NMR reveals two topologies of sarcolipin in oriented lipid bilayers.

Authors:  Jarrod J Buffy; Nathaniel J Traaseth; Alessandro Mascioni; Peter L Gor'kov; Eduard Y Chekmenev; William W Brey; Gianluigi Veglia
Journal:  Biochemistry       Date:  2006-09-12       Impact factor: 3.162

7.  Dipolar waves as NMR maps of protein structure.

Authors:  Michael F Mesleh; Gianluigi Veglia; Tara M DeSilva; Francesca M Marassi; Stanley J Opella
Journal:  J Am Chem Soc       Date:  2002-04-24       Impact factor: 15.419

8.  Defining the intramembrane binding mechanism of sarcolipin to calcium ATPase using solution NMR spectroscopy.

Authors:  Jarrod J Buffy; Bethany A Buck-Koehntop; Fernando Porcelli; Nathaniel J Traaseth; David D Thomas; Gianluigi Veglia
Journal:  J Mol Biol       Date:  2006-02-20       Impact factor: 5.469

Review 9.  Sarcolipin and phospholamban as regulators of cardiac sarcoplasmic reticulum Ca2+ ATPase.

Authors:  Poornima Bhupathy; Gopal J Babu; Muthu Periasamy
Journal:  J Mol Cell Cardiol       Date:  2007-03-12       Impact factor: 5.000

Review 10.  Structural and dynamic basis of phospholamban and sarcolipin inhibition of Ca(2+)-ATPase.

Authors:  Nathaniel J Traaseth; Kim N Ha; Raffaello Verardi; Lei Shi; Jarrod J Buffy; Larry R Masterson; Gianluigi Veglia
Journal:  Biochemistry       Date:  2007-12-15       Impact factor: 3.162

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  19 in total

1.  Sensitivity enhancement for membrane proteins reconstituted in parallel and perpendicular oriented bicelles obtained by using repetitive cross-polarization and membrane-incorporated free radicals.

Authors:  Sophie N Koroloff; Deanna M Tesch; Emmanuel O Awosanya; Alexander A Nevzorov
Journal:  J Biomol NMR       Date:  2017-02-15       Impact factor: 2.835

2.  3D MAS NMR Experiment Utilizing Through-Space 15N-15N Correlations.

Authors:  Kevin J Donovan; Robert Silvers; Sara Linse; Robert G Griffin
Journal:  J Am Chem Soc       Date:  2017-05-03       Impact factor: 15.419

3.  Improving the quality of oriented membrane protein spectra using heat-compensated separated local field experiments.

Authors:  Songlin Wang; T Gopinath; Gianluigi Veglia
Journal:  J Biomol NMR       Date:  2019-08-28       Impact factor: 2.835

4.  A spectroscopic assignment technique for membrane proteins reconstituted in magnetically aligned bicelles.

Authors:  Wenxing Tang; Robert W Knox; Alexander A Nevzorov
Journal:  J Biomol NMR       Date:  2012-09-14       Impact factor: 2.835

5.  Assignment of oriented sample NMR resonances from a three transmembrane helix protein.

Authors:  D T Murray; I Hung; T A Cross
Journal:  J Magn Reson       Date:  2014-01-21       Impact factor: 2.229

6.  Structural dynamics and conformational equilibria of SERCA regulatory proteins in membranes by solid-state NMR restrained simulations.

Authors:  Alfonso De Simone; Kaustubh R Mote; Gianluigi Veglia
Journal:  Biophys J       Date:  2014-06-17       Impact factor: 4.033

7.  Application of paramagnetic relaxation enhancements to accelerate the acquisition of 2D and 3D solid-state NMR spectra of oriented membrane proteins.

Authors:  Songlin Wang; T Gopinath; Gianluigi Veglia
Journal:  Methods       Date:  2017-12-22       Impact factor: 3.608

8.  Probing Residue-Specific Water-Protein Interactions in Oriented Lipid Membranes via Solid-State NMR Spectroscopy.

Authors:  Alysha Dicke; T Gopinath; Yingjie Wang; Gianluigi Veglia
Journal:  J Phys Chem B       Date:  2016-10-18       Impact factor: 2.991

Review 9.  Isotope labeling for solution and solid-state NMR spectroscopy of membrane proteins.

Authors:  Raffaello Verardi; Nathaniel J Traaseth; Larry R Masterson; Vitaly V Vostrikov; Gianluigi Veglia
Journal:  Adv Exp Med Biol       Date:  2012       Impact factor: 2.622

10.  Solid state NMR strategy for characterizing native membrane protein structures.

Authors:  Dylan T Murray; Nabanita Das; Timothy A Cross
Journal:  Acc Chem Res       Date:  2013-03-07       Impact factor: 22.384

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