Literature DB >> 11991353

Towards high-resolution solid-state NMR on large uniformly 15N- and [13C,15N]-labeled membrane proteins in oriented lipid bilayers.

Thomas Vosegaard1, Niels Chr Nielsen.   

Abstract

Based on exact numerical simulations, taking into account isotropic and conformation-dependent anisotropic nuclear spin interactions, we systematically analyse the prospects for high-resolution solid-state NMR on large isotope-labeled membrane proteins macroscopically oriented in phospholipid bilayers. Using the known X-ray structures of rhodopsin and porin as models for large membrane proteins with typical alpha-helical and beta-barrel structural motifs, the analysis considers all possible one- to six-dimensional spectra comprised of frequency dimensions with evolution under any combination of amide 1H, amide 15N, and carbonyl 13C chemical shifts as well as 1H-15N dipole-dipole couplings. Under consideration of typical nuclear spin interaction and experimental line-shape parameters, the analysis provides new insight into the resolution capability and orientation-dependent transfer efficiency of existing experiments as well as guidelines as to improved experimental approaches for the study of large uniformly 15N- and [13C,15N]-labeled membrane proteins. On basis of these results and numerical optimizations of coherence-transfer efficiencies, we propose several new high-resolution experiments for sequential protein backbone assignment and structure determination.

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Year:  2002        PMID: 11991353     DOI: 10.1023/a:1014987227285

Source DB:  PubMed          Journal:  J Biomol NMR        ISSN: 0925-2738            Impact factor:   2.835


  46 in total

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2.  A sequence and structural study of transmembrane helices.

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3.  High-resolution conformation of gramicidin A in a lipid bilayer by solid-state NMR.

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5.  Are there dominant membrane protein families with a given number of helices?

Authors:  I T Arkin; A T Brünger; D M Engelman
Journal:  Proteins       Date:  1997-08

6.  Inter- and intramolecular distance measurements by solid-state MAS NMR: determination of gramicidin A channel dimer structure in hydrated phospholipid bilayers.

Authors:  R Fu; M Cotten; T A Cross
Journal:  J Biomol NMR       Date:  2000-03       Impact factor: 2.835

7.  Resonance assignment of 13C/15N labeled solid proteins by two- and three-dimensional magic-angle-spinning NMR.

Authors:  M Hong
Journal:  J Biomol NMR       Date:  1999-09       Impact factor: 2.835

Review 8.  Protein structure by solid-state NMR spectroscopy.

Authors:  S J Opella; P L Stewart; K G Valentine
Journal:  Q Rev Biophys       Date:  1987-02       Impact factor: 5.318

9.  Protein backbone angle restraints from searching a database for chemical shift and sequence homology.

Authors:  G Cornilescu; F Delaglio; A Bax
Journal:  J Biomol NMR       Date:  1999-03       Impact factor: 2.835

10.  Conformation of alamethicin in oriented phospholipid bilayers determined by (15)N solid-state nuclear magnetic resonance.

Authors:  M Bak; R P Bywater; M Hohwy; J K Thomsen; K Adelhorst; H J Jakobsen; O W Sørensen; N C Nielsen
Journal:  Biophys J       Date:  2001-09       Impact factor: 4.033

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  13 in total

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2.  High-resolution NMR spectroscopy of a GPCR in aligned bicelles.

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3.  Reconstitution and alignment by a magnetic field of a beta-barrel membrane protein in bicelles.

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4.  Can PISEMA experiments be used to extract structural parameters for mobile beta-barrels?

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5.  Triple resonance experiments for aligned sample solid-state NMR of (13)C and (15)N labeled proteins.

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6.  Sensitivity enhanced heteronuclear correlation spectroscopy in multidimensional solid-state NMR of oriented systems via chemical shift coherences.

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7.  The Role of Basic Amino Acids in the Molecular Recognition of Hydroxyapatite by Statherin using Solid State NMR.

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8.  Orientation of a beta-hairpin antimicrobial peptide in lipid bilayers from two-dimensional dipolar chemical-shift correlation NMR.

Authors:  Ming Tang; Alan J Waring; Robert I Lehrer; Mei Hong
Journal:  Biophys J       Date:  2006-02-24       Impact factor: 4.033

9.  Helix conformations in 7TM membrane proteins determined using oriented-sample solid-state NMR with multiple residue-specific 15N labeling.

Authors:  Thomas Vosegaard; Miya Kamihira-Ishijima; Anthony Watts; Niels Chr Nielsen
Journal:  Biophys J       Date:  2007-09-07       Impact factor: 4.033

10.  Resolution enhancement in solid-state NMR of oriented membrane proteins by anisotropic differential linebroadening.

Authors:  Thomas Vosegaard; Kresten Bertelsen; Jan M Pedersen; Lea Thøgersen; Birgit Schiøtt; Emad Tajkhorshid; Troels Skrydstrup; Niels Chr Nielsen
Journal:  J Am Chem Soc       Date:  2008-03-15       Impact factor: 15.419

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