Literature DB >> 25749871

Simultaneous acquisition of 2D and 3D solid-state NMR experiments for sequential assignment of oriented membrane protein samples.

T Gopinath1, Kaustubh R Mote, Gianluigi Veglia.   

Abstract

We present a new method called DAISY (Dual Acquisition orIented ssNMR spectroScopY) for the simultaneous acquisition of 2D and 3D oriented solid-state NMR experiments for membrane proteins reconstituted in mechanically or magnetically aligned lipid bilayers. DAISY utilizes dual acquisition of sine and cosine dipolar or chemical shift coherences and long living (15)N longitudinal polarization to obtain two multi-dimensional spectra, simultaneously. In these new experiments, the first acquisition gives the polarization inversion spin exchange at the magic angle (PISEMA) or heteronuclear correlation (HETCOR) spectra, the second acquisition gives PISEMA-mixing or HETCOR-mixing spectra, where the mixing element enables inter-residue correlations through (15)N-(15)N homonuclear polarization transfer. The analysis of the two 2D spectra (first and second acquisitions) enables one to distinguish (15)N-(15)N inter-residue correlations for sequential assignment of membrane proteins. DAISY can be implemented in 3D experiments that include the polarization inversion spin exchange at magic angle via I spin coherence (PISEMAI) sequence, as we show for the simultaneous acquisition of 3D PISEMAI-HETCOR and 3D PISEMAI-HETCOR-mixing experiments.

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Year:  2015        PMID: 25749871      PMCID: PMC4981477          DOI: 10.1007/s10858-015-9916-9

Source DB:  PubMed          Journal:  J Biomol NMR        ISSN: 0925-2738            Impact factor:   2.835


  44 in total

1.  Imaging membrane protein helical wheels.

Authors:  J Wang; J Denny; C Tian; S Kim; Y Mo; F Kovacs; Z Song; K Nishimura; Z Gan; R Fu; J R Quine; T A Cross
Journal:  J Magn Reson       Date:  2000-05       Impact factor: 2.229

Review 2.  The protein kinase complement of the human genome.

Authors:  G Manning; D B Whyte; R Martinez; T Hunter; S Sudarsanam
Journal:  Science       Date:  2002-12-06       Impact factor: 47.728

Review 3.  Structure and dynamics of membrane proteins by magic angle spinning solid-state NMR.

Authors:  Ann McDermott
Journal:  Annu Rev Biophys       Date:  2009       Impact factor: 12.981

4.  Mismatched Hartmann-Hahn conditions cause proton-mediated intermolecular magnetization transfer between dilute low-spin nuclei in NMR of static solids.

Authors:  Alexander A Nevzorov
Journal:  J Am Chem Soc       Date:  2008-08-02       Impact factor: 15.419

5.  Sensitivity enhanced heteronuclear correlation spectroscopy in multidimensional solid-state NMR of oriented systems via chemical shift coherences.

Authors:  T Gopinath; Nathaniel J Traaseth; Kaustubh Mote; Gianluigi Veglia
Journal:  J Am Chem Soc       Date:  2010-04-21       Impact factor: 15.419

Review 6.  Recent advances in magic angle spinning solid state NMR of membrane proteins.

Authors:  Shenlin Wang; Vladimir Ladizhansky
Journal:  Prog Nucl Magn Reson Spectrosc       Date:  2014-07-26       Impact factor: 9.795

7.  A spectroscopic assignment technique for membrane proteins reconstituted in magnetically aligned bicelles.

Authors:  Wenxing Tang; Robert W Knox; Alexander A Nevzorov
Journal:  J Biomol NMR       Date:  2012-09-14       Impact factor: 2.835

8.  Structural dynamics and conformational equilibria of SERCA regulatory proteins in membranes by solid-state NMR restrained simulations.

Authors:  Alfonso De Simone; Kaustubh R Mote; Gianluigi Veglia
Journal:  Biophys J       Date:  2014-06-17       Impact factor: 4.033

9.  Dipolar waves as NMR maps of protein structure.

Authors:  Michael F Mesleh; Gianluigi Veglia; Tara M DeSilva; Francesca M Marassi; Stanley J Opella
Journal:  J Am Chem Soc       Date:  2002-04-24       Impact factor: 15.419

Review 10.  Sensitivity and resolution enhancement of oriented solid-state NMR: application to membrane proteins.

Authors:  T Gopinath; Kaustubh R Mote; Gianluigi Veglia
Journal:  Prog Nucl Magn Reson Spectrosc       Date:  2013-08-12       Impact factor: 9.795

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  11 in total

Review 1.  Dynamic membrane interactions of antibacterial and antifungal biomolecules, and amyloid peptides, revealed by solid-state NMR spectroscopy.

Authors:  Akira Naito; Nobuaki Matsumori; Ayyalusamy Ramamoorthy
Journal:  Biochim Biophys Acta Gen Subj       Date:  2017-06-06       Impact factor: 3.770

2.  Lipid-Mediated Interactions between the Antimicrobial Peptides Magainin 2 and PGLa in Bilayers.

Authors:  Nicole Harmouche; Burkhard Bechinger
Journal:  Biophys J       Date:  2018-08-16       Impact factor: 4.033

3.  Application of paramagnetic relaxation enhancements to accelerate the acquisition of 2D and 3D solid-state NMR spectra of oriented membrane proteins.

Authors:  Songlin Wang; T Gopinath; Gianluigi Veglia
Journal:  Methods       Date:  2017-12-22       Impact factor: 3.608

4.  A suite of pulse sequences based on multiple sequential acquisitions at one and two radiofrequency channels for solid-state magic-angle spinning NMR studies of proteins.

Authors:  Kshama Sharma; Perunthiruthy K Madhu; Kaustubh R Mote
Journal:  J Biomol NMR       Date:  2016-06-30       Impact factor: 2.835

5.  Solid-State NMR Investigations of the MHC II Transmembrane Domains: Topological Equilibria and Lipid Interactions.

Authors:  Christopher Aisenbrey; Evgeniy S Salnikov; Burkhard Bechinger
Journal:  J Membr Biol       Date:  2019-06-11       Impact factor: 1.843

6.  Supramolecular Organization of Apolipoprotein-A-I-Derived Peptides within Disc-like Arrangements.

Authors:  Evgeniy S Salnikov; G M Anantharamaiah; Burkhard Bechinger
Journal:  Biophys J       Date:  2018-07-11       Impact factor: 4.033

7.  Multiple acquisitions via sequential transfer of orphan spin polarization (MAeSTOSO): How far can we push residual spin polarization in solid-state NMR?

Authors:  T Gopinath; Gianluigi Veglia
Journal:  J Magn Reson       Date:  2016-03-19       Impact factor: 2.229

8.  Enhancing NMR Sensitivity of Natural-Abundance Low-γ Nuclei by Ultrafast Magic-Angle-Spinning Solid-State NMR Spectroscopy.

Authors:  Rongchun Zhang; Yitian Chen; Nair Rodriguez-Hornedo; Ayyalusamy Ramamoorthy
Journal:  Chemphyschem       Date:  2016-07-22       Impact factor: 3.102

9.  A theoretical assessment of structure determination of multi-span membrane proteins by oriented sample solid-state NMR spectroscopy.

Authors:  Daniel K Weber; Gianluigi Veglia
Journal:  Aust J Chem       Date:  2019-09-20       Impact factor: 1.321

10.  Structure, Topology, and Dynamics of Membrane-Inserted Polypeptides and Lipids by Solid-State NMR Spectroscopy: Investigations of the Transmembrane Domains of the DQ Beta-1 Subunit of the MHC II Receptor and of the COP I Protein p24.

Authors:  Evgeniy S Salnikov; Christopher Aisenbrey; Bianca Pokrandt; Britta Brügger; Burkhard Bechinger
Journal:  Front Mol Biosci       Date:  2019-09-24
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