Literature DB >> 20334357

Proton-evolved local-field solid-state NMR studies of cytochrome b5 embedded in bicelles, revealing both structural and dynamical information.

Ronald Soong1, Pieter E S Smith, Jiadi Xu, Kazutoshi Yamamoto, Sang-Choul Im, Lucy Waskell, Ayyalusamy Ramamoorthy.   

Abstract

Structural biology of membrane proteins has rapidly evolved into a new frontier of science. Although solving the structure of a membrane protein with atomic-level resolution is still a major challenge, separated local field (SLF) NMR spectroscopy has become an invaluable tool in obtaining structural images of membrane proteins under physiological conditions. Recent studies have demonstrated the use of rotating-frame SLF techniques to accurately measure strong heteronuclear dipolar couplings between directly bonded nuclei. However, in these experiments, all weak dipolar couplings are suppressed. On the other hand, weak heteronuclear dipolar couplings can be measured using laboratory-frame SLF experiments, but only at the expense of spectral resolution for strongly dipolar coupled spins. In the present study, we implemented two-dimensional proton-evolved local-field (2D PELF) pulse sequences using either composite zero cross-polarization (COMPOZER-CP) or windowless isotropic mixing (WIM) for magnetization transfer. These PELF sequences can be used for the measurement of a broad range of heteronuclear dipolar couplings, allowing for a complete mapping of protein dynamics in a lipid bilayer environment. Experimental results from magnetically aligned bicelles containing uniformly (15)N-labeled cytochrome b(5) are presented and theoretical analyses of the new PELF sequences are reported. Our results suggest that the PELF-based experimental approaches will have a profound impact on solid-state NMR spectroscopy of membrane proteins and other membrane-associated molecules in magnetically aligned bicelles.

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Year:  2010        PMID: 20334357      PMCID: PMC2860266          DOI: 10.1021/ja910807e

Source DB:  PubMed          Journal:  J Am Chem Soc        ISSN: 0002-7863            Impact factor:   15.419


  63 in total

1.  13C NMR of liquid crystals with different proton homonuclear dipolar decoupling methods

Authors: 
Journal:  J Magn Reson       Date:  1999-05       Impact factor: 2.229

2.  Structure of outer membrane protein A transmembrane domain by NMR spectroscopy.

Authors:  A Arora; F Abildgaard; J H Bushweller; L K Tamm
Journal:  Nat Struct Biol       Date:  2001-04

3.  Spectroscopic validation of the pentameric structure of phospholamban.

Authors:  Nathaniel J Traaseth; Raffaello Verardi; Kurt D Torgersen; Christine B Karim; David D Thomas; Gianluigi Veglia
Journal:  Proc Natl Acad Sci U S A       Date:  2007-09-05       Impact factor: 11.205

4.  Two-dimensional solid-state NMR reveals two topologies of sarcolipin in oriented lipid bilayers.

Authors:  Jarrod J Buffy; Nathaniel J Traaseth; Alessandro Mascioni; Peter L Gor'kov; Eduard Y Chekmenev; William W Brey; Gianluigi Veglia
Journal:  Biochemistry       Date:  2006-09-12       Impact factor: 3.162

5.  Line narrowing in methyl-TROSY using zero-quantum 1H-13C NMR spectroscopy.

Authors:  Vitali Tugarinov; Remco Sprangers; Lewis E Kay
Journal:  J Am Chem Soc       Date:  2004-04-21       Impact factor: 15.419

6.  Theory for nuclear magnetic relaxation of probes in anisotropic systems: application of cholesterol in phospholipid vesicles.

Authors:  J R Brainard; A Szabo
Journal:  Biochemistry       Date:  1981-08-04       Impact factor: 3.162

7.  Solid-state NMR reveals structural and dynamical properties of a membrane-anchored electron-carrier protein, cytochrome b5.

Authors:  Ulrich H N Dürr; Kazutoshi Yamamoto; Sang-Choul Im; Lucy Waskell; Ayyalusamy Ramamoorthy
Journal:  J Am Chem Soc       Date:  2007-05-09       Impact factor: 15.419

8.  NMR structure of the cathelicidin-derived human antimicrobial peptide LL-37 in dodecylphosphocholine micelles.

Authors:  Fernando Porcelli; Raffaello Verardi; Lei Shi; Katherine A Henzler-Wildman; Ayyalusamy Ramamoorthy; Gianluigi Veglia
Journal:  Biochemistry       Date:  2008-04-26       Impact factor: 3.162

9.  Dynamics of ligand binding from 13C NMR relaxation dispersion at natural abundance.

Authors:  John S Zintsmaster; Brian D Wilson; Jeffrey W Peng
Journal:  J Am Chem Soc       Date:  2008-10-04       Impact factor: 15.419

Review 10.  Structural and dynamic basis of phospholamban and sarcolipin inhibition of Ca(2+)-ATPase.

Authors:  Nathaniel J Traaseth; Kim N Ha; Raffaello Verardi; Lei Shi; Jarrod J Buffy; Larry R Masterson; Gianluigi Veglia
Journal:  Biochemistry       Date:  2007-12-15       Impact factor: 3.162

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  21 in total

1.  Multidimensional oriented solid-state NMR experiments enable the sequential assignment of uniformly 15N labeled integral membrane proteins in magnetically aligned lipid bilayers.

Authors:  Kaustubh R Mote; T Gopinath; Nathaniel J Traaseth; Jason Kitchen; Peter L Gor'kov; William W Brey; Gianluigi Veglia
Journal:  J Biomol NMR       Date:  2011-11       Impact factor: 2.835

2.  A model of the membrane-bound cytochrome b5-cytochrome P450 complex from NMR and mutagenesis data.

Authors:  Shivani Ahuja; Nicole Jahr; Sang-Choul Im; Subramanian Vivekanandan; Nataliya Popovych; Stéphanie V Le Clair; Rui Huang; Ronald Soong; Jiadi Xu; Kazutoshi Yamamoto; Ravi P Nanga; Angela Bridges; Lucy Waskell; Ayyalusamy Ramamoorthy
Journal:  J Biol Chem       Date:  2013-05-24       Impact factor: 5.157

3.  Proton-detected 2D radio frequency driven recoupling solid-state NMR studies on micelle-associated cytochrome-b(5).

Authors:  Manoj Kumar Pandey; Subramanian Vivekanandan; Kazutoshi Yamamoto; Sangchoul Im; Lucy Waskell; Ayyalusamy Ramamoorthy
Journal:  J Magn Reson       Date:  2014-03-01       Impact factor: 2.229

4.  Probing the transmembrane structure and dynamics of microsomal NADPH-cytochrome P450 oxidoreductase by solid-state NMR.

Authors:  Rui Huang; Kazutoshi Yamamoto; Meng Zhang; Nataliya Popovych; Ivan Hung; Sang-Choul Im; Zhehong Gan; Lucy Waskell; Ayyalusamy Ramamoorthy
Journal:  Biophys J       Date:  2014-05-20       Impact factor: 4.033

5.  Proton evolved local field solid-state nuclear magnetic resonance using Hadamard encoding: theory and application to membrane proteins.

Authors:  T Gopinath; Kaustubh R Mote; Gianluigi Veglia
Journal:  J Chem Phys       Date:  2011-08-21       Impact factor: 3.488

6.  INEPT-based separated-local-field NMR spectroscopy: a unique approach to elucidate side-chain dynamics of membrane-associated proteins.

Authors:  Jiadi Xu; Ronald Soong; Sang-Choul Im; Lucy Waskell; Ayyalusamy Ramamoorthy
Journal:  J Am Chem Soc       Date:  2010-07-28       Impact factor: 15.419

7.  On the combined analysis of ²H and ¹⁵N/¹H solid-state NMR data for determination of transmembrane peptide orientation and dynamics.

Authors:  Vitaly V Vostrikov; Christopher V Grant; Stanley J Opella; Roger E Koeppe
Journal:  Biophys J       Date:  2011-12-20       Impact factor: 4.033

Review 8.  NMR structures of membrane proteins in phospholipid bilayers.

Authors:  Jasmina Radoicic; George J Lu; Stanley J Opella
Journal:  Q Rev Biophys       Date:  2014-07-17       Impact factor: 5.318

9.  ¹H, ¹³C and ¹⁵N resonance assignments for the full-length mammalian cytochrome b₅ in a membrane environment.

Authors:  Subramanian Vivekanandan; Shivani Ahuja; Sang-Choul Im; Lucy Waskell; Ayyalusamy Ramamoorthy
Journal:  Biomol NMR Assign       Date:  2013-10-09       Impact factor: 0.746

10.  Cellular solid-state NMR investigation of a membrane protein using dynamic nuclear polarization.

Authors:  Kazutoshi Yamamoto; Marc A Caporini; Sang-Choul Im; Lucy Waskell; Ayyalusamy Ramamoorthy
Journal:  Biochim Biophys Acta       Date:  2014-07-11
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