Literature DB >> 21861572

Proton evolved local field solid-state nuclear magnetic resonance using Hadamard encoding: theory and application to membrane proteins.

T Gopinath1, Kaustubh R Mote, Gianluigi Veglia.   

Abstract

NMR anisotropic parameters such as dipolar couplings and chemical shifts are central to structure and orientation determination of aligned membrane proteins and liquid crystals. Among the separated local field experiments, the proton evolved local field (PELF) scheme is particularly suitable to measure dynamically averaged dipolar couplings and give information on local molecular motions. However, the PELF experiment requires the acquisition of several 2D datasets at different mixing times to optimize the sensitivity for the complete range of dipolar couplings of the resonances in the spectrum. Here, we propose a new PELF experiment that takes the advantage of the Hadamard encoding (HE) to obtain higher sensitivity for a broad range of dipolar couplings using a single 2D experiment. The HE scheme is obtained by selecting the spin operators with phase switching of hard pulses. This approach enables one to detect four spin operators, simultaneously, which can be processed into two 2D spectra covering a broader range of dipolar couplings. The advantages of the new approach are illustrated for a U-(15)N NAL single crystal and the U-(15)N labeled single-pass membrane protein sarcolipin reconstituted in oriented lipid bicelles. The HE-PELF scheme can be implemented in other multidimensional experiments to speed up the characterization of the structure and dynamics of oriented membrane proteins and liquid crystalline samples.
© 2011 American Institute of Physics

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Year:  2011        PMID: 21861572      PMCID: PMC3172034          DOI: 10.1063/1.3622604

Source DB:  PubMed          Journal:  J Chem Phys        ISSN: 0021-9606            Impact factor:   3.488


  39 in total

1.  Fast multi-dimensional Hadamard spectroscopy.

Authors:  Eriks Kupce; Ray Freeman
Journal:  J Magn Reson       Date:  2003-07       Impact factor: 2.229

2.  Dipolar waves map the structure and topology of helices in membrane proteins.

Authors:  Michael F Mesleh; Sangwon Lee; Gianluigi Veglia; David S Thiriot; Francesca M Marassi; Stanley J Opella
Journal:  J Am Chem Soc       Date:  2003-07-23       Impact factor: 15.419

3.  Structure determination of a membrane protein with two trans-membrane helices in aligned phospholipid bicelles by solid-state NMR spectroscopy.

Authors:  Anna A De Angelis; Stanley C Howell; Alexander A Nevzorov; Stanley J Opella
Journal:  J Am Chem Soc       Date:  2006-09-20       Impact factor: 15.419

4.  Macromolecular structural elucidation with solid-state NMR-derived orientational constraints.

Authors:  R R Ketchem; K C Lee; S Huo; T A Cross
Journal:  J Biomol NMR       Date:  1996-07       Impact factor: 2.835

5.  Sensitivity enhanced heteronuclear correlation spectroscopy in multidimensional solid-state NMR of oriented systems via chemical shift coherences.

Authors:  T Gopinath; Nathaniel J Traaseth; Kaustubh Mote; Gianluigi Veglia
Journal:  J Am Chem Soc       Date:  2010-04-21       Impact factor: 15.419

6.  NMRPipe: a multidimensional spectral processing system based on UNIX pipes.

Authors:  F Delaglio; S Grzesiek; G W Vuister; G Zhu; J Pfeifer; A Bax
Journal:  J Biomol NMR       Date:  1995-11       Impact factor: 2.835

7.  Dipolar waves as NMR maps of protein structure.

Authors:  Michael F Mesleh; Gianluigi Veglia; Tara M DeSilva; Francesca M Marassi; Stanley J Opella
Journal:  J Am Chem Soc       Date:  2002-04-24       Impact factor: 15.419

8.  High-resolution characterization of liquid-crystalline [60]fullerenes using solid-state nuclear magnetic resonance spectroscopy.

Authors:  Sergey V Dvinskikh; Kazutoshi Yamamoto; David Scanu; Robert Deschenaux; Ayyalusamy Ramamoorthy
Journal:  J Phys Chem B       Date:  2008-09-09       Impact factor: 2.991

9.  Defining the intramembrane binding mechanism of sarcolipin to calcium ATPase using solution NMR spectroscopy.

Authors:  Jarrod J Buffy; Bethany A Buck-Koehntop; Fernando Porcelli; Nathaniel J Traaseth; David D Thomas; Gianluigi Veglia
Journal:  J Mol Biol       Date:  2006-02-20       Impact factor: 5.469

Review 10.  Structural and dynamic basis of phospholamban and sarcolipin inhibition of Ca(2+)-ATPase.

Authors:  Nathaniel J Traaseth; Kim N Ha; Raffaello Verardi; Lei Shi; Jarrod J Buffy; Larry R Masterson; Gianluigi Veglia
Journal:  Biochemistry       Date:  2007-12-15       Impact factor: 3.162

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  8 in total

1.  Hybridization of TEDOR and NCX MAS solid-state NMR experiments for simultaneous acquisition of heteronuclear correlation spectra and distance measurements.

Authors:  T Gopinath; Songlin Wang; John Lee; Hideki Aihara; Gianluigi Veglia
Journal:  J Biomol NMR       Date:  2019-02-25       Impact factor: 2.835

2.  Orphan spin operators enable the acquisition of multiple 2D and 3D magic angle spinning solid-state NMR spectra.

Authors:  T Gopinath; Gianluigi Veglia
Journal:  J Chem Phys       Date:  2013-05-14       Impact factor: 3.488

Review 3.  Cholesterol-induced suppression of membrane elastic fluctuations at the atomistic level.

Authors:  Trivikram R Molugu; Michael F Brown
Journal:  Chem Phys Lipids       Date:  2016-05-03       Impact factor: 3.329

4.  Time-shared experiments for efficient assignment of triple-selectively labeled proteins.

Authors:  Frank Löhr; Aisha Laguerre; Christoph Bock; Sina Reckel; Peter J Connolly; Norzehan Abdul-Manan; Franz Tumulka; Rupert Abele; Jonathan M Moore; Volker Dötsch
Journal:  J Magn Reson       Date:  2014-09-30       Impact factor: 2.229

5.  Determination of structural topology of a membrane protein in lipid bilayers using polarization optimized experiments (POE) for static and MAS solid state NMR spectroscopy.

Authors:  Kaustubh R Mote; T Gopinath; Gianluigi Veglia
Journal:  J Biomol NMR       Date:  2013-08-21       Impact factor: 2.835

Review 6.  Sensitivity and resolution enhancement of oriented solid-state NMR: application to membrane proteins.

Authors:  T Gopinath; Kaustubh R Mote; Gianluigi Veglia
Journal:  Prog Nucl Magn Reson Spectrosc       Date:  2013-08-12       Impact factor: 9.795

7.  Multi-receiver solid-state NMR using polarization optimized experiments (POE) at ultrafast magic angle spinning.

Authors:  T Gopinath; Daniel K Weber; Gianluigi Veglia
Journal:  J Biomol NMR       Date:  2020-04-24       Impact factor: 2.835

Review 8.  The magic of bicelles lights up membrane protein structure.

Authors:  Ulrich H N Dürr; Melissa Gildenberg; Ayyalusamy Ramamoorthy
Journal:  Chem Rev       Date:  2012-08-24       Impact factor: 60.622

  8 in total

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