Literature DB >> 22208192

On the combined analysis of ²H and ¹⁵N/¹H solid-state NMR data for determination of transmembrane peptide orientation and dynamics.

Vitaly V Vostrikov1, Christopher V Grant, Stanley J Opella, Roger E Koeppe.   

Abstract

The dynamics of membrane-spanning peptides have a strong affect on the solid-state NMR observables. We present a combined analysis of ²H-alanine quadrupolar splittings together with ¹⁵N/(1)H dipolar couplings and ¹⁵N chemical shifts, using two models to treat the dynamics, for the systematic evaluation of transmembrane peptides based on the GWALP23 sequence (acetyl-GGALW(LA)₆LWLAGA-amide). The results indicate that derivatives of GWALP23 incorporating diverse guest residues adopt a range of apparent tilt angles that span 5°-35° in lipid bilayer membranes. By comparing individual and combined analyses of specifically ²H- or ¹⁵N-labeled peptides incorporated in magnetically or mechanically aligned lipid bilayers, we examine the influence of data-set size/identity, and of explicitly modeled dynamics, on the deduced average orientations of the peptides. We conclude that peptides with small apparent tilt values (<∼10°) can be fitted by extensive families of solutions, which can be narrowed by incorporating additional ¹⁵N as well as ²H restraints. Conversely, peptides exhibiting larger tilt angles display more narrow distributions of tilt and rotation that can be fitted using smaller sets of experimental constraints or even with ²H or ¹⁵N data alone. Importantly, for peptides that tilt significantly more than 10° from the bilayer-normal, the contribution from rigid body dynamics can be approximated by a principal order parameter.
Copyright © 2011 Biophysical Society. Published by Elsevier Inc. All rights reserved.

Entities:  

Mesh:

Substances:

Year:  2011        PMID: 22208192      PMCID: PMC3244059          DOI: 10.1016/j.bpj.2011.11.008

Source DB:  PubMed          Journal:  Biophys J        ISSN: 0006-3495            Impact factor:   4.033


  42 in total

1.  Imaging membrane protein helical wheels.

Authors:  J Wang; J Denny; C Tian; S Kim; Y Mo; F Kovacs; Z Song; K Nishimura; Z Gan; R Fu; J R Quine; T A Cross
Journal:  J Magn Reson       Date:  2000-05       Impact factor: 2.229

2.  Structure determination of a membrane protein with two trans-membrane helices in aligned phospholipid bicelles by solid-state NMR spectroscopy.

Authors:  Anna A De Angelis; Stanley C Howell; Alexander A Nevzorov; Stanley J Opella
Journal:  J Am Chem Soc       Date:  2006-09-20       Impact factor: 15.419

3.  Orientation and effects of mastoparan X on phospholipid bicelles.

Authors:  J A Whiles; R Brasseur; K J Glover; G Melacini; E A Komives; R R Vold
Journal:  Biophys J       Date:  2001-01       Impact factor: 4.033

4.  Response of GWALP transmembrane peptides to changes in the tryptophan anchor positions.

Authors:  Vitaly V Vostrikov; Roger E Koeppe
Journal:  Biochemistry       Date:  2011-08-12       Impact factor: 3.162

5.  Long-term-stable ether-lipid vs conventional ester-lipid bicelles in oriented solid-state NMR: altered structural information in studies of antimicrobial peptides.

Authors:  Kresten Bertelsen; Brian Vad; Erik H Nielsen; Sara K Hansen; Troels Skrydstrup; Daniel E Otzen; Thomas Vosegaard; Niels Chr Nielsen
Journal:  J Phys Chem B       Date:  2011-02-10       Impact factor: 2.991

6.  Three-dimensional structure of the transmembrane domain of Vpu from HIV-1 in aligned phospholipid bicelles.

Authors:  Sang Ho Park; Anna A De Angelis; Alexander A Nevzorov; Chin H Wu; Stanley J Opella
Journal:  Biophys J       Date:  2006-07-21       Impact factor: 4.033

7.  Charged or aromatic anchor residue dependence of transmembrane peptide tilt.

Authors:  Vitaly V Vostrikov; Anna E Daily; Denise V Greathouse; Roger E Koeppe
Journal:  J Biol Chem       Date:  2010-07-28       Impact factor: 5.157

8.  Comparison of "Polarization inversion with spin exchange at magic angle" and "geometric analysis of labeled alanines" methods for transmembrane helix alignment.

Authors:  Vitaly V Vostrikov; Christopher V Grant; Anna E Daily; Stanley J Opella; Roger E Koeppe
Journal:  J Am Chem Soc       Date:  2008-09-03       Impact factor: 15.419

9.  Characterization of magnetically orientable bilayers in mixtures of dihexanoylphosphatidylcholine and dimyristoylphosphatidylcholine by solid-state NMR.

Authors:  C R Sanders; J P Schwonek
Journal:  Biochemistry       Date:  1992-09-22       Impact factor: 3.162

10.  Solution structure and phospholipid interactions of the isolated voltage-sensor domain from KvAP.

Authors:  Joel A Butterwick; Roderick MacKinnon
Journal:  J Mol Biol       Date:  2010-09-21       Impact factor: 5.469

View more
  21 in total

1.  Protein dynamics elucidated by NMR technique.

Authors:  Conggang Li; Chun Tang; Maili Liu
Journal:  Protein Cell       Date:  2013-10       Impact factor: 14.870

2.  Structural dynamics and topology of phosphorylated phospholamban homopentamer reveal its role in the regulation of calcium transport.

Authors:  Vitaly V Vostrikov; Kaustubh R Mote; Raffaello Verardi; Gianluigi Veglia
Journal:  Structure       Date:  2013-10-24       Impact factor: 5.006

3.  Oriented samples: a tool for determining the membrane topology and the mechanism of action of cationic antimicrobial peptides by solid-state NMR.

Authors:  Matthieu Fillion; Michèle Auger
Journal:  Biophys Rev       Date:  2015-02-24

4.  Tyrosine replacing tryptophan as an anchor in GWALP peptides.

Authors:  Nicholas J Gleason; Vitaly V Vostrikov; Denise V Greathouse; Christopher V Grant; Stanley J Opella; Roger E Koeppe
Journal:  Biochemistry       Date:  2012-03-05       Impact factor: 3.162

5.  Properties of membrane-incorporated WALP peptides that are anchored on only one end.

Authors:  Johanna M Rankenberg; Vitaly V Vostrikov; Denise V Greathouse; Christopher V Grant; Stanley J Opella; Roger E Koeppe
Journal:  Biochemistry       Date:  2012-12-03       Impact factor: 3.162

6.  Canonical azimuthal rotations and flanking residues constrain the orientation of transmembrane helices.

Authors:  Orlando L Sánchez-Muñoz; Erik Strandberg; E Esteban-Martín; Stephan L Grage; Anne S Ulrich; Jesús Salgado
Journal:  Biophys J       Date:  2013-04-02       Impact factor: 4.033

7.  Influence of Lipid Saturation, Hydrophobic Length and Cholesterol on Double-Arginine-Containing Helical Peptides in Bilayer Membranes.

Authors:  Karli Lipinski; Matthew J McKay; Fahmida Afrose; Ashley N Martfeld; Roger E Koeppe; Denise V Greathouse
Journal:  Chembiochem       Date:  2019-09-18       Impact factor: 3.164

8.  NMR Spectroscopy Approach to Study the Structure, Orientation, and Mechanism of the Multidrug Exporter EmrE.

Authors:  Maureen Leninger; Nathaniel J Traaseth
Journal:  Methods Mol Biol       Date:  2018

9.  Single tryptophan and tyrosine comparisons in the N-terminal and C-terminal interface regions of transmembrane GWALP peptides.

Authors:  Nicholas J Gleason; Denise V Greathouse; Christopher V Grant; Stanley J Opella; Roger E Koeppe
Journal:  J Phys Chem B       Date:  2013-10-29       Impact factor: 2.991

10.  Ionization Properties of Histidine Residues in the Lipid Bilayer Membrane Environment.

Authors:  Ashley N Martfeld; Denise V Greathouse; Roger E Koeppe
Journal:  J Biol Chem       Date:  2016-07-20       Impact factor: 5.157

View more

北京卡尤迪生物科技股份有限公司 © 2022-2023.