Literature DB >> 20593897

INEPT-based separated-local-field NMR spectroscopy: a unique approach to elucidate side-chain dynamics of membrane-associated proteins.

Jiadi Xu1, Ronald Soong, Sang-Choul Im, Lucy Waskell, Ayyalusamy Ramamoorthy.   

Abstract

Despite recent advances in NMR approaches for structural biology, determination of membrane protein dynamics in its native environment continues to be a monumental challenge, as most NMR structural studies of membrane proteins are commonly carried out either in micelles or in vesicle systems under frozen conditions. To overcome this difficulty, we propose a solid-state NMR technique that allows for the determination of side-chain dynamics from membrane proteins in lipid bilayers. This new technique, namely dipolar enhanced polarization transfer (DREPT), allows for a wide range of dipolar couplings to be encoded, providing high resolution and sensitivity for systems that undergo motional averaging such as that of amino acid side chains. NMR observables such as dipolar couplings and chemical shift anisotropy, which are highly sensitive to molecular motions, provide a direct way of probing protein dynamics over a wide range of time scales. Therefore, using an appropriate model, it is possible to determine side-chain dynamics and provide additional information on the topology and function of a membrane protein in its native environment.

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Year:  2010        PMID: 20593897      PMCID: PMC2914499          DOI: 10.1021/ja103983f

Source DB:  PubMed          Journal:  J Am Chem Soc        ISSN: 0002-7863            Impact factor:   15.419


  18 in total

1.  Orientation of the valine-1 side chain of the gramicidin transmembrane channel and implications for channel functioning. A 2H NMR study.

Authors:  J A Killian; M J Taylor; R E Koeppe
Journal:  Biochemistry       Date:  1992-11-24       Impact factor: 3.162

Review 2.  Structural and dynamic studies of proteins by solid-state NMR spectroscopy: rapid movement forward.

Authors:  Ann E McDermott
Journal:  Curr Opin Struct Biol       Date:  2004-10       Impact factor: 6.809

3.  Changes in transmembrane helix alignment by arginine residues revealed by solid-state NMR experiments and coarse-grained MD simulations.

Authors:  Vitaly V Vostrikov; Benjamin A Hall; Denise V Greathouse; Roger E Koeppe; Mark S P Sansom
Journal:  J Am Chem Soc       Date:  2010-04-28       Impact factor: 15.419

4.  Tryptophans in membrane proteins: indole ring orientations and functional implications in the gramicidin channel.

Authors:  W Hu; K C Lee; T A Cross
Journal:  Biochemistry       Date:  1993-07-13       Impact factor: 3.162

5.  Theory for nuclear magnetic relaxation of probes in anisotropic systems: application of cholesterol in phospholipid vesicles.

Authors:  J R Brainard; A Szabo
Journal:  Biochemistry       Date:  1981-08-04       Impact factor: 3.162

6.  Solid-state 19F NMR spectroscopy reveals that Trp41 participates in the gating mechanism of the M2 proton channel of influenza A virus.

Authors:  Raiker Witter; Farhod Nozirov; Ulrich Sternberg; Timothy A Cross; Anne S Ulrich; Riqiang Fu
Journal:  J Am Chem Soc       Date:  2007-12-29       Impact factor: 15.419

7.  Solid-state NMR reveals structural and dynamical properties of a membrane-anchored electron-carrier protein, cytochrome b5.

Authors:  Ulrich H N Dürr; Kazutoshi Yamamoto; Sang-Choul Im; Lucy Waskell; Ayyalusamy Ramamoorthy
Journal:  J Am Chem Soc       Date:  2007-05-09       Impact factor: 15.419

8.  Role of side-chain conformational entropy in transmembrane helix dimerization of glycophorin A.

Authors:  Wei Liu; Evan Crocker; David J Siminovitch; Steven O Smith
Journal:  Biophys J       Date:  2003-02       Impact factor: 4.033

Review 9.  The cytochromes P450 and b5 and their reductases--promising targets for structural studies by advanced solid-state NMR spectroscopy.

Authors:  Ulrich H N Dürr; Lucy Waskell; Ayyalusamy Ramamoorthy
Journal:  Biochim Biophys Acta       Date:  2007-08-24

10.  Probing the molecular dynamics of the ABC multidrug transporter LmrA by deuterium solid-state nuclear magnetic resonance.

Authors:  Alena Siarheyeva; Jakob J Lopez; Ines Lehner; Ute A Hellmich; Hendrik W van Veen; Clemens Glaubitz
Journal:  Biochemistry       Date:  2007-02-16       Impact factor: 3.162

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  16 in total

1.  Enhanced sensitivity by nonuniform sampling enables multidimensional MAS NMR spectroscopy of protein assemblies.

Authors:  Sivakumar Paramasivam; Christopher L Suiter; Guangjin Hou; Shangjin Sun; Melissa Palmer; Jeffrey C Hoch; David Rovnyak; Tatyana Polenova
Journal:  J Phys Chem B       Date:  2012-06-18       Impact factor: 2.991

2.  Proton-detected 2D radio frequency driven recoupling solid-state NMR studies on micelle-associated cytochrome-b(5).

Authors:  Manoj Kumar Pandey; Subramanian Vivekanandan; Kazutoshi Yamamoto; Sangchoul Im; Lucy Waskell; Ayyalusamy Ramamoorthy
Journal:  J Magn Reson       Date:  2014-03-01       Impact factor: 2.229

3.  Resolving nitrogen-15 and proton chemical shifts for mobile segments of elastin with two-dimensional NMR spectroscopy.

Authors:  Kosuke Ohgo; Walter P Niemczura; Brian C Seacat; Steven G Wise; Anthony S Weiss; Kristin K Kumashiro
Journal:  J Biol Chem       Date:  2012-04-01       Impact factor: 5.157

4.  1H-detected MAS solid-state NMR experiments enable the simultaneous mapping of rigid and dynamic domains of membrane proteins.

Authors:  T Gopinath; Sarah E D Nelson; Gianluigi Veglia
Journal:  J Magn Reson       Date:  2017-12       Impact factor: 2.229

5.  Intramolecular 1H-13C distance measurement in uniformly 13C, 15N labeled peptides by solid-state NMR.

Authors:  Shenhui Li; Yongchao Su; Mei Hong
Journal:  Solid State Nucl Magn Reson       Date:  2012-06-15       Impact factor: 2.293

6.  Supramolecular Organization of Apolipoprotein-A-I-Derived Peptides within Disc-like Arrangements.

Authors:  Evgeniy S Salnikov; G M Anantharamaiah; Burkhard Bechinger
Journal:  Biophys J       Date:  2018-07-11       Impact factor: 4.033

7.  1H assisted 13C/15N heteronuclear correlation spectroscopy in oriented sample solid-state NMR of single crystal and magnetically aligned samples.

Authors:  Eugene C Lin; Stanley J Opella
Journal:  J Magn Reson       Date:  2011-04-09       Impact factor: 2.229

Review 8.  NMR structures of membrane proteins in phospholipid bilayers.

Authors:  Jasmina Radoicic; George J Lu; Stanley J Opella
Journal:  Q Rev Biophys       Date:  2014-07-17       Impact factor: 5.318

9.  ¹H, ¹³C and ¹⁵N resonance assignments for the full-length mammalian cytochrome b₅ in a membrane environment.

Authors:  Subramanian Vivekanandan; Shivani Ahuja; Sang-Choul Im; Lucy Waskell; Ayyalusamy Ramamoorthy
Journal:  Biomol NMR Assign       Date:  2013-10-09       Impact factor: 0.746

Review 10.  When detergent meets bilayer: birth and coming of age of lipid bicelles.

Authors:  Ulrich H N Dürr; Ronald Soong; Ayyalusamy Ramamoorthy
Journal:  Prog Nucl Magn Reson Spectrosc       Date:  2013-01-23       Impact factor: 9.795

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