Literature DB >> 17057807

Unsupervised learning with independent component analysis can identify patterns of glaucomatous visual field defects.

Michael Henry Goldbaum1.   

Abstract

PURPOSE: We previously reported the use of clustering by unsupervised learning with machine learning classifiers to segment clusters of patterns in standard automated perimetry (SAP) for glaucoma. In this study, the process of unsupervised learning by independent component analysis decomposed SAP field patterns into axes, and the information represented by these axes was evaluated.
METHODS: SAP fields were obtained with the Humphrey Visual Field Analyzer on 189 normal eyes and 156 eyes with glaucomatous optic neuropathy (GON) determined by masked review with stereoscopic optic disc photos. The variational Bayesian independent component analysis mixture model (vB-ICA-mm) partitioned the SAP fields into the most informative number of clusters. Simultaneously, it learned an optimal number of maximally independent axes for each cluster.
RESULTS: The most informative number of clusters was two. vB-ICA-mm placed 68.6% of the SAP fields from eyes with GON in a cluster labeled G and 98.4% of the fields from eyes with normal optic discs in a cluster labeled N. Cluster G optimally contained six axes. Post hoc analysis of patterns generated at -1 SD and +2 SD from the cluster G mean on the six axes revealed defects similar to those identified by experts as indicative of glaucoma. SAP fields associated with an axis showed increasing severity as they were located farther in the positive direction from the cluster G mean.
CONCLUSIONS: vB-ICA-mm represented the SAP fields with patterns that were meaningful for glaucoma experts. This process also captured severity in the patterns uncovered. These findings should validate vB-ICA-mm as a data mining technique for new and unfamiliar complex tests.

Entities:  

Mesh:

Year:  2005        PMID: 17057807      PMCID: PMC1447578     

Source DB:  PubMed          Journal:  Trans Am Ophthalmol Soc        ISSN: 0065-9533


  10 in total

1.  Comparing neural networks and linear discriminant functions for glaucoma detection using confocal scanning laser ophthalmoscopy of the optic disc.

Authors:  Christopher Bowd; Kwokleung Chan; Linda M Zangwill; Michael H Goldbaum; Te-Won Lee; Terrence J Sejnowski; Robert N Weinreb
Journal:  Invest Ophthalmol Vis Sci       Date:  2002-11       Impact factor: 4.799

2.  Using machine learning classifiers to identify glaucomatous change earlier in standard visual fields.

Authors:  Pamela A Sample; Michael H Goldbaum; Kwokleung Chan; Catherine Boden; Te-Won Lee; Christiana Vasile; Andreas G Boehm; Terrence Sejnowski; Chris A Johnson; Robert N Weinreb
Journal:  Invest Ophthalmol Vis Sci       Date:  2002-08       Impact factor: 4.799

3.  Spatial classification of glaucomatous visual field loss.

Authors:  D B Henson; S E Spenceley; D R Bull
Journal:  Br J Ophthalmol       Date:  1996-06       Impact factor: 4.638

4.  Comparing machine learning classifiers for diagnosing glaucoma from standard automated perimetry.

Authors:  Michael H Goldbaum; Pamela A Sample; Kwokleung Chan; Julia Williams; Te-Won Lee; Eytan Blumenthal; Christopher A Girkin; Linda M Zangwill; Christopher Bowd; Terrence Sejnowski; Robert N Weinreb
Journal:  Invest Ophthalmol Vis Sci       Date:  2002-01       Impact factor: 4.799

5.  Variational Learning of Clusters of Undercomplete Nonsymmetric Independent Components.

Authors:  Kwokleung Chan; Te-Won Lee; Terrence J Sejnowski
Journal:  J Mach Learn Res       Date:  2002-08-01       Impact factor: 3.654

6.  Interpretation of automated perimetry for glaucoma by neural network.

Authors:  M H Goldbaum; P A Sample; H White; B Côlt; P Raphaelian; R D Fechtner; R N Weinreb
Journal:  Invest Ophthalmol Vis Sci       Date:  1994-08       Impact factor: 4.799

7.  Assessing the utility of reliability indices for automated visual fields. Testing ocular hypertensives.

Authors:  M Bickler-Bluth; G L Trick; A E Kolker; D G Cooper
Journal:  Ophthalmology       Date:  1989-05       Impact factor: 12.079

8.  Neural networks to identify glaucoma with structural and functional measurements.

Authors:  L Brigatti; D Hoffman; J Caprioli
Journal:  Am J Ophthalmol       Date:  1996-05       Impact factor: 5.258

9.  Unsupervised machine learning with independent component analysis to identify areas of progression in glaucomatous visual fields.

Authors:  Pamela A Sample; Catherine Boden; Zuohua Zhang; John Pascual; Te-Won Lee; Linda M Zangwill; Robert N Weinreb; Jonathan G Crowston; Esther M Hoffmann; Felipe A Medeiros; Terrence Sejnowski; Michael Goldbaum
Journal:  Invest Ophthalmol Vis Sci       Date:  2005-10       Impact factor: 4.799

10.  Using unsupervised learning with variational bayesian mixture of factor analysis to identify patterns of glaucomatous visual field defects.

Authors:  Pamela A Sample; Kwokleung Chan; Catherine Boden; Te-Won Lee; Eytan Z Blumenthal; Robert N Weinreb; Antje Bernd; John Pascual; Jiucang Hao; Terrence Sejnowski; Michael H Goldbaum
Journal:  Invest Ophthalmol Vis Sci       Date:  2004-08       Impact factor: 4.799

  10 in total
  8 in total

Review 1.  Detection of visual field progression in glaucoma with standard achromatic perimetry: a review and practical implications.

Authors:  Kouros Nouri-Mahdavi; Nariman Nassiri; Annette Giangiacomo; Joseph Caprioli
Journal:  Graefes Arch Clin Exp Ophthalmol       Date:  2011-08-26       Impact factor: 3.117

2.  Learning from data: recognizing glaucomatous defect patterns and detecting progression from visual field measurements.

Authors:  Siamak Yousefi; Michael H Goldbaum; Madhusudhanan Balasubramanian; Felipe A Medeiros; Linda M Zangwill; Jeffrey M Liebmann; Christopher A Girkin; Robert N Weinreb; Christopher Bowd
Journal:  IEEE Trans Biomed Eng       Date:  2014-04-01       Impact factor: 4.538

3.  Progression of patterns (POP): a machine classifier algorithm to identify glaucoma progression in visual fields.

Authors:  Michael H Goldbaum; Intae Lee; Giljin Jang; Madhusudhanan Balasubramanian; Pamela A Sample; Robert N Weinreb; Jeffrey M Liebmann; Christopher A Girkin; Douglas R Anderson; Linda M Zangwill; Marie-Josee Fredette; Tzyy-Ping Jung; Felipe A Medeiros; Christopher Bowd
Journal:  Invest Ophthalmol Vis Sci       Date:  2012-09-25       Impact factor: 4.799

4.  Patterns of glaucomatous visual field loss in sita fields automatically identified using independent component analysis.

Authors:  Michael H Goldbaum; Gil-Jin Jang; Chris Bowd; Jiucang Hao; Linda M Zangwill; Jeffrey Liebmann; Christopher Girkin; Tzyy-Ping Jung; Robert N Weinreb; Pamela A Sample
Journal:  Trans Am Ophthalmol Soc       Date:  2009-12

5.  Glaucomatous patterns in Frequency Doubling Technology (FDT) perimetry data identified by unsupervised machine learning classifiers.

Authors:  Christopher Bowd; Robert N Weinreb; Madhusudhanan Balasubramanian; Intae Lee; Giljin Jang; Siamak Yousefi; Linda M Zangwill; Felipe A Medeiros; Christopher A Girkin; Jeffrey M Liebmann; Michael H Goldbaum
Journal:  PLoS One       Date:  2014-01-30       Impact factor: 3.240

6.  Unsupervised Gaussian Mixture-Model With Expectation Maximization for Detecting Glaucomatous Progression in Standard Automated Perimetry Visual Fields.

Authors:  Siamak Yousefi; Madhusudhanan Balasubramanian; Michael H Goldbaum; Felipe A Medeiros; Linda M Zangwill; Robert N Weinreb; Jeffrey M Liebmann; Christopher A Girkin; Christopher Bowd
Journal:  Transl Vis Sci Technol       Date:  2016-05-03       Impact factor: 3.283

7.  Spatial and Temporal Characteristics of Visual Field Progression in Glaucoma Assessed by Parallel Factor Analysis.

Authors:  Seungmo Kim; Kilhwan Shon; Kyung Rim Sung
Journal:  Korean J Ophthalmol       Date:  2019-06

Review 8.  A Review of Deep Learning for Screening, Diagnosis, and Detection of Glaucoma Progression.

Authors:  Atalie C Thompson; Alessandro A Jammal; Felipe A Medeiros
Journal:  Transl Vis Sci Technol       Date:  2020-07-22       Impact factor: 3.283

  8 in total

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