Literature DB >> 19915537

Diverse backbone-cyclized peptides via codon reprogramming.

Takashi Kawakami1, Atsushi Ohta, Masaki Ohuchi, Hiroshi Ashigai, Hiroshi Murakami, Hiroaki Suga.   

Abstract

We report a methodology for the ribosomal synthesis of backbone-cyclized peptides involving genetic code reprogramming to introduce one or more nonproteinogenic amino acids. Expression of linear peptides bearing a cysteine-proline dipeptide sequence followed by glycolic acid results in self-rearrangement to a C-terminal diketopiperadine-thioester, which non-enzymatically generates a cyclized peptide. We demonstrate the ribosomal synthesis of several naturally occurring backbone-cyclized peptides and a library based on a bicyclic scaffold, and we identify bioactive sequences by screening and deconvolution.

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Year:  2009        PMID: 19915537     DOI: 10.1038/nchembio.259

Source DB:  PubMed          Journal:  Nat Chem Biol        ISSN: 1552-4450            Impact factor:   15.040


  24 in total

1.  Production of cyclic peptides and proteins in vivo.

Authors:  C P Scott; E Abel-Santos; M Wall; D C Wahnon; S J Benkovic
Journal:  Proc Natl Acad Sci U S A       Date:  1999-11-23       Impact factor: 11.205

2.  Cell-free translation reconstituted with purified components.

Authors:  Y Shimizu; A Inoue; Y Tomari; T Suzuki; T Yokogawa; K Nishikawa; T Ueda
Journal:  Nat Biotechnol       Date:  2001-08       Impact factor: 54.908

3.  Biosynthesis of the cyclotide Kalata B1 by using protein splicing.

Authors:  Richard H Kimura; Ahn-Tuyet Tran; Julio A Camarero
Journal:  Angew Chem Int Ed Engl       Date:  2006-01-30       Impact factor: 15.336

4.  A highly flexible tRNA acylation method for non-natural polypeptide synthesis.

Authors:  Hiroshi Murakami; Atsushi Ohta; Hiroshi Ashigai; Hiroaki Suga
Journal:  Nat Methods       Date:  2006-05       Impact factor: 28.547

5.  Retrocyclins kill bacilli and germinating spores of Bacillus anthracis and inactivate anthrax lethal toxin.

Authors:  Wei Wang; Chandrika Mulakala; Sabrina C Ward; Grace Jung; Hai Luong; Duy Pham; Alan J Waring; Yiannis Kaznessis; Wuyuan Lu; Kenneth A Bradley; Robert I Lehrer
Journal:  J Biol Chem       Date:  2006-06-21       Impact factor: 5.157

6.  Synthesis of polyester by means of genetic code reprogramming.

Authors:  Atsushi Ohta; Hiroshi Murakami; Eri Higashimura; Hiroaki Suga
Journal:  Chem Biol       Date:  2007-12

7.  Reprogramming the translation initiation for the synthesis of physiologically stable cyclic peptides.

Authors:  Yuki Goto; Atsushi Ohta; Yusuke Sako; Yusuke Yamagishi; Hiroshi Murakami; Hiroaki Suga
Journal:  ACS Chem Biol       Date:  2008-01-24       Impact factor: 5.100

8.  Ribosomal synthesis of polypeptoids and peptoid-peptide hybrids.

Authors:  Takashi Kawakami; Hiroshi Murakami; Hiroaki Suga
Journal:  J Am Chem Soc       Date:  2008-12-17       Impact factor: 15.419

9.  RNA-peptide fusions for the in vitro selection of peptides and proteins.

Authors:  R W Roberts; J W Szostak
Journal:  Proc Natl Acad Sci U S A       Date:  1997-11-11       Impact factor: 11.205

10.  Expression cloning in the test tube.

Authors:  R W King; K D Lustig; P T Stukenberg; T J McGarry; M W Kirschner
Journal:  Science       Date:  1997-08-15       Impact factor: 47.728

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  37 in total

1.  Flexizymes for genetic code reprogramming.

Authors:  Yuki Goto; Takayuki Katoh; Hiroaki Suga
Journal:  Nat Protoc       Date:  2011-05-12       Impact factor: 13.491

2.  The RNA origin of transfer RNA aminoacylation and beyond.

Authors:  Hiroaki Suga; Gosuke Hayashi; Naohiro Terasaka
Journal:  Philos Trans R Soc Lond B Biol Sci       Date:  2011-10-27       Impact factor: 6.237

Review 3.  Biological synthesis of circular polypeptides.

Authors:  Teshome L Aboye; Julio A Camarero
Journal:  J Biol Chem       Date:  2012-06-14       Impact factor: 5.157

4.  Efficient one-pot cyclization/folding of Rhesus θ-defensin-1 (RTD-1).

Authors:  Teshome L Aboye; Yilong Li; Subhabrata Majumder; Jinfeng Hao; Alexander Shekhtman; Julio A Camarero
Journal:  Bioorg Med Chem Lett       Date:  2012-03-02       Impact factor: 2.823

Review 5.  Cell-free synthetic biology: thinking outside the cell.

Authors:  C Eric Hodgman; Michael C Jewett
Journal:  Metab Eng       Date:  2011-09-18       Impact factor: 9.783

6.  A Cleavable Scaffold Strategy for the Synthesis of One-Bead One-Compound Cyclic Peptoid Libraries That Can Be Sequenced By Tandem Mass Spectrometry.

Authors:  Levi S Simpson; Thomas Kodadek
Journal:  Tetrahedron Lett       Date:  2012-03-05       Impact factor: 2.415

7.  Writing the macrocycle manual: new computational and biochemical tools and informatic rules should spur research on a relatively underexplored class of molecules.

Authors: 
Journal:  Nat Chem Biol       Date:  2014-09       Impact factor: 15.040

8.  An orthogonal ribosome-tRNA pair via engineering of the peptidyl transferase center.

Authors:  Naohiro Terasaka; Gosuke Hayashi; Takayuki Katoh; Hiroaki Suga
Journal:  Nat Chem Biol       Date:  2014-06-08       Impact factor: 15.040

9.  Template-constrained macrocyclic peptides prepared from native, unprotected precursors.

Authors:  Kenneth V Lawson; Tristan E Rose; Patrick G Harran
Journal:  Proc Natl Acad Sci U S A       Date:  2013-09-16       Impact factor: 11.205

10.  Exploration of the central dogma at the interface of chemistry and biology: 2010 Yale Chemical Biology Symposium.

Authors:  Alice Qinhua Zhou
Journal:  Yale J Biol Med       Date:  2010-09
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