Literature DB >> 21946161

Cell-free synthetic biology: thinking outside the cell.

C Eric Hodgman1, Michael C Jewett.   

Abstract

Cell-free synthetic biology is emerging as a powerful approach aimed to understand, harness, and expand the capabilities of natural biological systems without using intact cells. Cell-free systems bypass cell walls and remove genetic regulation to enable direct access to the inner workings of the cell. The unprecedented level of control and freedom of design, relative to in vivo systems, has inspired the rapid development of engineering foundations for cell-free systems in recent years. These efforts have led to programmed circuits, spatially organized pathways, co-activated catalytic ensembles, rational optimization of synthetic multi-enzyme pathways, and linear scalability from the micro-liter to the 100-liter scale. It is now clear that cell-free systems offer a versatile test-bed for understanding why nature's designs work the way they do and also for enabling biosynthetic routes to novel chemicals, sustainable fuels, and new classes of tunable materials. While challenges remain, the emergence of cell-free systems is poised to open the way to novel products that until now have been impractical, if not impossible, to produce by other means.
Copyright © 2011 Elsevier Inc. All rights reserved.

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Year:  2011        PMID: 21946161      PMCID: PMC3322310          DOI: 10.1016/j.ymben.2011.09.002

Source DB:  PubMed          Journal:  Metab Eng        ISSN: 1096-7176            Impact factor:   9.783


  99 in total

1.  Five hard truths for synthetic biology.

Authors:  Roberta Kwok
Journal:  Nature       Date:  2010-01-21       Impact factor: 49.962

2.  Ribosomal synthesis and in situ isolation of peptide molecules in a cell-free translation system.

Authors:  Kyung-Ho Lee; Yong-Chan Kwon; Sung Joon Yoo; Dong-Myung Kim
Journal:  Protein Expr Purif       Date:  2010-01-25       Impact factor: 1.650

3.  Production of functional bacteriorhodopsin by an Escherichia coli cell-free protein synthesis system supplemented with steroid detergent and lipid.

Authors:  Kazumi Shimono; Mie Goto; Takashi Kikukawa; Seiji Miyauchi; Mikako Shirouzu; Naoki Kamo; Shigeyuki Yokoyama
Journal:  Protein Sci       Date:  2009-10       Impact factor: 6.725

4.  Five-component cascade synthesis of nucleotide analogues in an engineered self-immobilized enzyme aggregate.

Authors:  Robert A Scism; Brian O Bachmann
Journal:  Chembiochem       Date:  2010-01-04       Impact factor: 3.164

Review 5.  Artificial assembly of a minimal cell.

Authors:  Giovanni Murtas
Journal:  Mol Biosyst       Date:  2009-09-28

6.  Encoding multiple unnatural amino acids via evolution of a quadruplet-decoding ribosome.

Authors:  Heinz Neumann; Kaihang Wang; Lloyd Davis; Maria Garcia-Alai; Jason W Chin
Journal:  Nature       Date:  2010-02-14       Impact factor: 49.962

7.  DNA as a universal substrate for chemical kinetics.

Authors:  David Soloveichik; Georg Seelig; Erik Winfree
Journal:  Proc Natl Acad Sci U S A       Date:  2010-03-04       Impact factor: 11.205

8.  Practical cell-free protein synthesis system using purified wheat embryos.

Authors:  Kazuyuki Takai; Tatsuya Sawasaki; Yaeta Endo
Journal:  Nat Protoc       Date:  2010-01-21       Impact factor: 13.491

9.  Production of biocommodities and bioelectricity by cell-free synthetic enzymatic pathway biotransformations: challenges and opportunities.

Authors:  Y-H Percival Zhang
Journal:  Biotechnol Bioeng       Date:  2010-03-01       Impact factor: 4.530

10.  Diverse backbone-cyclized peptides via codon reprogramming.

Authors:  Takashi Kawakami; Atsushi Ohta; Masaki Ohuchi; Hiroshi Ashigai; Hiroshi Murakami; Hiroaki Suga
Journal:  Nat Chem Biol       Date:  2009-10-25       Impact factor: 15.040

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  85 in total

1.  Artificial cells: crowded genes perform differently.

Authors:  Friedrich C Simmel
Journal:  Nat Nanotechnol       Date:  2013-08       Impact factor: 39.213

2.  Multi-dimensional studies of synthetic genetic promoters enabled by microfluidic impact printing.

Authors:  Jinzhen Fan; Fernando Villarreal; Brent Weyers; Yunfeng Ding; Kuo Hao Tseng; Jiannan Li; Baoqing Li; Cheemeng Tan; Tingrui Pan
Journal:  Lab Chip       Date:  2017-06-27       Impact factor: 6.799

3.  High-yield hydrogen production from biomass by in vitro metabolic engineering: Mixed sugars coutilization and kinetic modeling.

Authors:  Joseph A Rollin; Julia Martin del Campo; Suwan Myung; Fangfang Sun; Chun You; Allison Bakovic; Roberto Castro; Sanjeev K Chandrayan; Chang-Hao Wu; Michael W W Adams; Ryan S Senger; Y-H Percival Zhang
Journal:  Proc Natl Acad Sci U S A       Date:  2015-04-06       Impact factor: 11.205

4.  A Highly Productive, One-Pot Cell-Free Protein Synthesis Platform Based on Genomically Recoded Escherichia coli.

Authors:  Benjamin J Des Soye; Vincent R Gerbasi; Paul M Thomas; Neil L Kelleher; Michael C Jewett
Journal:  Cell Chem Biol       Date:  2019-11-06       Impact factor: 8.116

5.  Multiplexed in vivo His-tagging of enzyme pathways for in vitro single-pot multienzyme catalysis.

Authors:  Harris H Wang; Po-Yi Huang; George Xu; Wilhelm Haas; Adam Marblestone; Jun Li; Steven P Gygi; Anthony C Forster; Michael C Jewett; George M Church
Journal:  ACS Synth Biol       Date:  2012-02-17       Impact factor: 5.110

6.  A synthetic biochemistry system for the in vitro production of isoprene from glycolysis intermediates.

Authors:  Tyler P Korman; Bobby Sahachartsiri; Dan Li; Jeffrey M Vinokur; David Eisenberg; James U Bowie
Journal:  Protein Sci       Date:  2014-03-12       Impact factor: 6.725

7.  Quantitative and synthetic biology approaches to combat bacterial pathogens.

Authors:  Feilun Wu; Jonathan H Bethke; Meidi Wang; Lingchong You
Journal:  Curr Opin Biomed Eng       Date:  2017-10-24

Review 8.  Cell-free metabolic engineering: biomanufacturing beyond the cell.

Authors:  Quentin M Dudley; Ashty S Karim; Michael C Jewett
Journal:  Biotechnol J       Date:  2014-10-15       Impact factor: 4.677

9.  In Vitro Reconstruction of Nonribosomal Peptide Biosynthesis Directly from DNA Using Cell-Free Protein Synthesis.

Authors:  Anthony W Goering; Jian Li; Ryan A McClure; Regan J Thomson; Michael C Jewett; Neil L Kelleher
Journal:  ACS Synth Biol       Date:  2016-08-09       Impact factor: 5.110

10.  Thrombin-mediated transcriptional regulation using DNA aptamers in DNA-based cell-free protein synthesis.

Authors:  Sukanya Iyer; Mitchel J Doktycz
Journal:  ACS Synth Biol       Date:  2013-09-26       Impact factor: 5.110

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