Literature DB >> 21930588

The RNA origin of transfer RNA aminoacylation and beyond.

Hiroaki Suga1, Gosuke Hayashi, Naohiro Terasaka.   

Abstract

Aminoacylation of tRNA is an essential event in the translation system. Although in the modern system protein enzymes play the sole role in tRNA aminoacylation, in the primitive translation system RNA molecules could have catalysed aminoacylation onto tRNA or tRNA-like molecules. Even though such RNA enzymes so far are not identified from known organisms, in vitro selection has generated such RNA catalysts from a pool of random RNA sequences. Among them, a set of RNA sequences, referred to as flexizymes (Fxs), discovered in our laboratory are able to charge amino acids onto tRNAs. Significantly, Fxs allow us to charge a wide variety of amino acids, including those that are non-proteinogenic, onto tRNAs bearing any desired anticodons, and thus enable us to reprogramme the genetic code at our will. This article summarizes the evolutionary history of Fxs and also the most recent advances in manipulating a translation system by integration with Fxs.

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Year:  2011        PMID: 21930588      PMCID: PMC3158918          DOI: 10.1098/rstb.2011.0137

Source DB:  PubMed          Journal:  Philos Trans R Soc Lond B Biol Sci        ISSN: 0962-8436            Impact factor:   6.237


  38 in total

1.  An in vitro evolved precursor tRNA with aminoacylation activity.

Authors:  H Saito; D Kourouklis; H Suga
Journal:  EMBO J       Date:  2001-04-02       Impact factor: 11.598

2.  Concurrent molecular recognition of the amino acid and tRNA by a ribozyme.

Authors:  H Saito; K Watanabe; H Suga
Journal:  RNA       Date:  2001-12       Impact factor: 4.942

3.  Cell-free translation reconstituted with purified components.

Authors:  Y Shimizu; A Inoue; Y Tomari; T Suzuki; T Yokogawa; K Nishikawa; T Ueda
Journal:  Nat Biotechnol       Date:  2001-08       Impact factor: 54.908

4.  RNA-catalyzed amino acid activation.

Authors:  R K Kumar; M Yarus
Journal:  Biochemistry       Date:  2001-06-19       Impact factor: 3.162

5.  Flexizymes for genetic code reprogramming.

Authors:  Yuki Goto; Takayuki Katoh; Hiroaki Suga
Journal:  Nat Protoc       Date:  2011-05-12       Impact factor: 13.491

6.  Outersphere and innersphere coordinated metal ions in an aminoacyl-tRNA synthetase ribozyme.

Authors:  Hirohide Saito; Hiroaki Suga
Journal:  Nucleic Acids Res       Date:  2002-12-01       Impact factor: 16.971

7.  The structural basis of ribosome activity in peptide bond synthesis.

Authors:  P Nissen; J Hansen; N Ban; P B Moore; T A Steitz
Journal:  Science       Date:  2000-08-11       Impact factor: 47.728

8.  An efficient system for the evolution of aminoacyl-tRNA synthetase specificity.

Authors:  Stephen W Santoro; Lei Wang; Brad Herberich; David S King; Peter G Schultz
Journal:  Nat Biotechnol       Date:  2002-09-16       Impact factor: 54.908

9.  An engineered Escherichia coli tyrosyl-tRNA synthetase for site-specific incorporation of an unnatural amino acid into proteins in eukaryotic translation and its application in a wheat germ cell-free system.

Authors:  Daisuke Kiga; Kensaku Sakamoto; Koichiro Kodama; Takanori Kigawa; Takayoshi Matsuda; Takashi Yabuki; Mikako Shirouzu; Yoko Harada; Hiroshi Nakayama; Koji Takio; Yoshinori Hasegawa; Yaeta Endo; Ichiro Hirao; Shigeyuki Yokoyama
Journal:  Proc Natl Acad Sci U S A       Date:  2002-07-03       Impact factor: 11.205

10.  Diverse backbone-cyclized peptides via codon reprogramming.

Authors:  Takashi Kawakami; Atsushi Ohta; Masaki Ohuchi; Hiroshi Ashigai; Hiroshi Murakami; Hiroaki Suga
Journal:  Nat Chem Biol       Date:  2009-10-25       Impact factor: 15.040

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  7 in total

1.  The chemical origins of life and its early evolution: an introduction.

Authors:  David M J Lilley; John Sutherland
Journal:  Philos Trans R Soc Lond B Biol Sci       Date:  2011-10-27       Impact factor: 6.237

Review 2.  The stereochemical basis of the genetic code and the (mostly) autotrophic origin of life.

Authors:  Juan C Fontecilla-Camps
Journal:  Life (Basel)       Date:  2014-12-16

Review 3.  Recent developments of engineered translational machineries for the incorporation of non-canonical amino acids into polypeptides.

Authors:  Naohiro Terasaka; Yoshihiko Iwane; Anna-Skrollan Geiermann; Yuki Goto; Hiroaki Suga
Journal:  Int J Mol Sci       Date:  2015-03-20       Impact factor: 5.923

Review 4.  Origins of tmRNA: the missing link in the birth of protein synthesis?

Authors:  Kevin Macé; Reynald Gillet
Journal:  Nucleic Acids Res       Date:  2016-08-02       Impact factor: 16.971

Review 5.  Unique roles of tryptophanyl-tRNA synthetase in immune control and its therapeutic implications.

Authors:  Mirim Jin
Journal:  Exp Mol Med       Date:  2019-01-07       Impact factor: 8.718

Review 6.  Progress in synthesizing protocells.

Authors:  O Duhan Toparlak; Sheref S Mansy
Journal:  Exp Biol Med (Maywood)       Date:  2018-12-03

7.  Coevolution Theory of the Genetic Code at Age Forty: Pathway to Translation and Synthetic Life.

Authors:  J Tze-Fei Wong; Siu-Kin Ng; Wai-Kin Mat; Taobo Hu; Hong Xue
Journal:  Life (Basel)       Date:  2016-03-16
  7 in total

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