Literature DB >> 18215017

Reprogramming the translation initiation for the synthesis of physiologically stable cyclic peptides.

Yuki Goto1, Atsushi Ohta, Yusuke Sako, Yusuke Yamagishi, Hiroshi Murakami, Hiroaki Suga.   

Abstract

The initiation codon dictates that the translation initiation event exclusively begins with methionine. We report here a new technology to reprogram the initiation event, where various amino acids and those bearing N (alpha)-acyl groups can be used as an initiator for peptide synthesis. The technology is built upon the concept of genetic code reprogramming, where methionine is depleted from the translation system and the initiation codon is reassigned to the desired amino acid. We have applied this technology to the synthesis of an antitumor cyclic peptide, G7-18NATE, closed by a physiologically stable bond, and it is also extended to the custom synthesis of its analogues with various ring sizes. Significantly, cyclization occurs spontaneously upon translation of the precursor linear peptides. To demonstrate the practicality of this methodology, we also prepared a small cyclic peptide library designated by 160 distinct mRNAs. Thus, this technology offers a new means to prepare a wide array of in vivo compatible cyclic peptide libraries for the discovery of peptidic drug candidates against various therapeutic targets.

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Year:  2008        PMID: 18215017     DOI: 10.1021/cb700233t

Source DB:  PubMed          Journal:  ACS Chem Biol        ISSN: 1554-8929            Impact factor:   5.100


  51 in total

1.  Flexizymes for genetic code reprogramming.

Authors:  Yuki Goto; Takayuki Katoh; Hiroaki Suga
Journal:  Nat Protoc       Date:  2011-05-12       Impact factor: 13.491

2.  The RNA origin of transfer RNA aminoacylation and beyond.

Authors:  Hiroaki Suga; Gosuke Hayashi; Naohiro Terasaka
Journal:  Philos Trans R Soc Lond B Biol Sci       Date:  2011-10-27       Impact factor: 6.237

3.  A Fluorescent Imaging Probe Based on a Macrocyclic Scaffold That Binds to Cellular EpCAM.

Authors:  Kazuhiro Iwasaki; Yuki Goto; Takayuki Katoh; Taro Yamashita; Shuichi Kaneko; Hiroaki Suga
Journal:  J Mol Evol       Date:  2015-11-09       Impact factor: 2.395

4.  Bases in the anticodon loop of tRNA(Ala)(GGC) prevent misreading.

Authors:  Hiroshi Murakami; Atsushi Ohta; Hiroaki Suga
Journal:  Nat Struct Mol Biol       Date:  2009-03-22       Impact factor: 15.369

Review 5.  Contemporary strategies for peptide macrocyclization.

Authors:  Christopher J White; Andrei K Yudin
Journal:  Nat Chem       Date:  2011-06-23       Impact factor: 24.427

Review 6.  Nucleic Acid-Barcoding Technologies: Converting DNA Sequencing into a Broad-Spectrum Molecular Counter.

Authors:  Glen Liszczak; Tom W Muir
Journal:  Angew Chem Int Ed Engl       Date:  2019-02-06       Impact factor: 15.336

Review 7.  Hijacking Translation Initiation for Synthetic Biology.

Authors:  Jeffery M Tharp; Natalie Krahn; Umesh Varshney; Dieter Söll
Journal:  Chembiochem       Date:  2020-03-02       Impact factor: 3.164

8.  Expanding the amino acid repertoire of ribosomal polypeptide synthesis via the artificial division of codon boxes.

Authors:  Yoshihiko Iwane; Azusa Hitomi; Hiroshi Murakami; Takayuki Katoh; Yuki Goto; Hiroaki Suga
Journal:  Nat Chem       Date:  2016-02-01       Impact factor: 24.427

9.  New Chemical Modalities and Strategic Thinking in Early Drug Discovery.

Authors:  Maria-Jesus Blanco; Kevin M Gardinier
Journal:  ACS Med Chem Lett       Date:  2020-01-14       Impact factor: 4.345

10.  Translation of DNA into a library of 13,000 synthetic small-molecule macrocycles suitable for in vitro selection.

Authors:  Brian N Tse; Thomas M Snyder; Yinghua Shen; David R Liu
Journal:  J Am Chem Soc       Date:  2008-10-29       Impact factor: 15.419

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