Literature DB >> 19798409

Slow cooling of protein crystals.

Matthew Warkentin1, Robert E Thorne.   

Abstract

Cryoprotectant-free thaumatin crystals have been cooled from 300 to 100 K at a rate of 0.1 K s(-1) - 10(3)-10(4) times slower than in conventional flash cooling - while continuously collecting X-ray diffraction data, so as to follow the evolution of protein lattice and solvent properties during cooling. Diffraction patterns show no evidence of crystalline ice at any temperature. This indicates that the lattice of protein molecules is itself an excellent cryoprotectant, and with sodium potassium tartrate incorporated from the 1.5 M mother liquor ice nucleation rates are at least as low as in a 70% glycerol solution. Crystal quality during slow cooling remains high, with an average mosaicity at 100 K of 0.2 degrees . Most of the mosaicity increase occurs above approximately 200 K, where the solvent is still liquid, and is concurrent with an anisotropic contraction of the unit cell. Near 180 K a crossover to solid-like solvent behavior occurs, and on further cooling there is no additional degradation of crystal order. The variation of B factor with temperature shows clear evidence of a protein dynamical transition near 210 K, and at lower temperatures the slope dB/dT is a factor of 3-6 smaller than has been reported for any other protein. These results establish the feasibility of fully temperature controlled studies of protein structure and dynamics between 300 and 100 K.

Entities:  

Year:  2009        PMID: 19798409      PMCID: PMC2746722          DOI: 10.1107/S0021889809023553

Source DB:  PubMed          Journal:  J Appl Crystallogr        ISSN: 0021-8898            Impact factor:   3.304


  42 in total

1.  Flash-cooling and annealing of protein crystals.

Authors:  S Kriminski; C L Caylor; M C Nonato; K D Finkelstein; R E Thorne
Journal:  Acta Crystallogr D Biol Crystallogr       Date:  2002-02-21

2.  Dynamical transition of myoglobin in a crystal: comparative studies of X-ray crystallography and Mössbauer spectroscopy.

Authors:  S H Chong; Y Joti; A Kidera; N Go; A Ostermann; A Gassmann; F Parak
Journal:  Eur Biophys J       Date:  2001-09       Impact factor: 1.733

3.  The influence of temperature on lysozyme crystals. Structure and dynamics of protein and water.

Authors:  I V Kurinov; R W Harrison
Journal:  Acta Crystallogr D Biol Crystallogr       Date:  1995-01-01

Review 4.  Advances in kinetic protein crystallography.

Authors:  Dominique Bourgeois; Antoine Royant
Journal:  Curr Opin Struct Biol       Date:  2005-10       Impact factor: 6.809

5.  The temperature of flash-cooling has dramatic effects on the diffraction quality of nucleosome crystals.

Authors:  Rajeswari S Edayathumangalam; Karolin Luger
Journal:  Acta Crystallogr D Biol Crystallogr       Date:  2005-06-24

6.  Shoot-and-Trap: use of specific x-ray damage to study structural protein dynamics by temperature-controlled cryo-crystallography.

Authors:  Jacques-Philippe Colletier; Dominique Bourgeois; Benoît Sanson; Didier Fournier; Joel L Sussman; Israel Silman; Martin Weik
Journal:  Proc Natl Acad Sci U S A       Date:  2008-08-13       Impact factor: 11.205

Review 7.  Crystallography of biological macromolecules at ultra-low temperature.

Authors:  H Hope
Journal:  Annu Rev Biophys Biophys Chem       Date:  1990

8.  Characterizing the secondary hydration shell on hydrated myoglobin, hemoglobin, and lysozyme powders by its vitrification behavior on cooling and its calorimetric glass-->liquid transition and crystallization behavior on reheating.

Authors:  G Sartor; A Hallbrucker; E Mayer
Journal:  Biophys J       Date:  1995-12       Impact factor: 4.033

9.  Protein dynamics. Mössbauer spectroscopy on deoxymyoglobin crystals.

Authors:  F Parak; E W Knapp; D Kucheida
Journal:  J Mol Biol       Date:  1982-10-15       Impact factor: 5.469

10.  Preliminary crystallographic studies of urease from jack bean and from Klebsiella aerogenes.

Authors:  E Jabri; M H Lee; R P Hausinger; P A Karplus
Journal:  J Mol Biol       Date:  1992-10-05       Impact factor: 5.469

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  18 in total

1.  Global radiation damage at 300 and 260 K with dose rates approaching 1 MGy s⁻¹.

Authors:  Matthew Warkentin; Ryan Badeau; Jesse B Hopkins; Anne M Mulichak; Lisa J Keefe; Robert E Thorne
Journal:  Acta Crystallogr D Biol Crystallogr       Date:  2012-01-17

2.  Glass transition in thaumatin crystals revealed through temperature-dependent radiation-sensitivity measurements.

Authors:  Matthew Warkentin; Robert E Thorne
Journal:  Acta Crystallogr D Biol Crystallogr       Date:  2010-09-18

3.  Dark progression reveals slow timescales for radiation damage between T = 180 and 240 K.

Authors:  Matthew Warkentin; Ryan Badeau; Jesse Hopkins; Robert E Thorne
Journal:  Acta Crystallogr D Biol Crystallogr       Date:  2011-08-09

4.  Spatial distribution of radiation damage to crystalline proteins at 25-300 K.

Authors:  Matthew Warkentin; Ryan Badeau; Jesse B Hopkins; Robert E Thorne
Journal:  Acta Crystallogr D Biol Crystallogr       Date:  2012-08-18

5.  Global radiation damage: temperature dependence, time dependence and how to outrun it.

Authors:  Matthew Warkentin; Jesse B Hopkins; Ryan Badeau; Anne M Mulichak; Lisa J Keefe; Robert E Thorne
Journal:  J Synchrotron Radiat       Date:  2012-11-29       Impact factor: 2.616

6.  A high-pressure cryocooling method for protein crystals and biological samples with reduced background X-ray scatter.

Authors:  Chae Un Kim; Jennifer L Wierman; Richard Gillilan; Enju Lima; Sol M Gruner
Journal:  J Appl Crystallogr       Date:  2012-12-21       Impact factor: 3.304

7.  Approaches to automated protein crystal harvesting.

Authors:  Marc C Deller; Bernhard Rupp
Journal:  Acta Crystallogr F Struct Biol Commun       Date:  2014-01-28       Impact factor: 1.056

8.  Solvent flows, conformation changes and lattice reordering in a cold protein crystal.

Authors:  David W Moreau; Hakan Atakisi; Robert E Thorne
Journal:  Acta Crystallogr D Struct Biol       Date:  2019-10-31       Impact factor: 7.652

9.  Temperature-dependent macromolecular X-ray crystallography.

Authors:  Martin Weik; Jacques Philippe Colletier
Journal:  Acta Crystallogr D Biol Crystallogr       Date:  2010-03-24

10.  Macromolecular crystallography radiation damage research: what's new?

Authors:  Elspeth F Garman; Martin Weik
Journal:  J Synchrotron Radiat       Date:  2011-04-27       Impact factor: 2.616

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