Literature DB >> 20944242

Glass transition in thaumatin crystals revealed through temperature-dependent radiation-sensitivity measurements.

Matthew Warkentin1, Robert E Thorne.   

Abstract

The temperature-dependence of radiation damage to thaumatin crystals between T = 300 and 100 K is reported. The amount of damage for a given dose decreases sharply as the temperature decreases from 300 to 220 K and then decreases more gradually on further cooling below the protein-solvent glass transition. Two regimes of temperature-activated behavior were observed. At temperatures above ∼200 K the activation energy of 18.0 kJ mol(-1) indicates that radiation damage is dominated by diffusive motions in the protein and solvent. At temperatures below ∼200 K the activation energy is only 1.00 kJ mol(-1), which is of the order of the thermal energy. Similar activation energies describe the temperature-dependence of radiation damage to a variety of solvent-free small-molecule organic crystals over the temperature range T = 300-80 K. It is suggested that radiation damage in this regime is vibrationally assisted and that the freezing-out of amino-acid scale vibrations contributes to the very weak temperature-dependence of radiation damage below ∼80 K. Analysis using the radiation-damage model of Blake and Phillips [Blake & Phillips (1962), Biological Effects of Ionizing Radiation at the Molecular Level, pp. 183-191] indicates that large-scale conformational and molecular motions are frozen out below T = 200 K but become increasingly prevalent and make an increasing contribution to damage at higher temperatures. Possible alternative mechanisms for radiation damage involving the formation of hydrogen-gas bubbles are discussed and discounted. These results have implications for mechanistic studies of proteins and for studies of the protein glass transition. They also suggest that data collection at T ≃ 220 K may provide a viable alternative for structure determination when cooling-induced disorder at T = 100 is excessive.

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Year:  2010        PMID: 20944242      PMCID: PMC2954455          DOI: 10.1107/S0907444910035523

Source DB:  PubMed          Journal:  Acta Crystallogr D Biol Crystallogr        ISSN: 0907-4449


  60 in total

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10.  The catalytic pathway of cytochrome p450cam at atomic resolution.

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  23 in total

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2.  Dark progression reveals slow timescales for radiation damage between T = 180 and 240 K.

Authors:  Matthew Warkentin; Ryan Badeau; Jesse Hopkins; Robert E Thorne
Journal:  Acta Crystallogr D Biol Crystallogr       Date:  2011-08-09

3.  Can radiation damage to protein crystals be reduced using small-molecule compounds?

Authors:  Jan Kmetko; Matthew Warkentin; Ulrich Englich; Robert E Thorne
Journal:  Acta Crystallogr D Biol Crystallogr       Date:  2011-09-08

4.  Temperature-dependent radiation sensitivity and order of 70S ribosome crystals.

Authors:  Matthew Warkentin; Jesse B Hopkins; Jonah B Haber; Gregor Blaha; Robert E Thorne
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5.  Spatial distribution of radiation damage to crystalline proteins at 25-300 K.

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Journal:  Acta Crystallogr D Biol Crystallogr       Date:  2012-08-18

6.  Global radiation damage: temperature dependence, time dependence and how to outrun it.

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Review 8.  Anomalous diffraction in crystallographic phase evaluation.

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9.  Solvent flows, conformation changes and lattice reordering in a cold protein crystal.

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10.  Instrumentation and experimental procedures for robust collection of X-ray diffraction data from protein crystals across physiological temperatures.

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