Literature DB >> 31692472

Solvent flows, conformation changes and lattice reordering in a cold protein crystal.

David W Moreau1, Hakan Atakisi1, Robert E Thorne1.   

Abstract

When protein crystals are abruptly cooled, the unit-cell, protein and solvent-cavity volumes all contract, but the volume of bulk-like internal solvent may expand. Outflow of this solvent from the unit cell and its accumulation in defective interior crystal regions has been suggested as one cause of the large increase in crystal mosaicity on cooling. It is shown that when apoferritin crystals are abruptly cooled to temperatures between 220 and 260 K, the unit cell contracts, solvent is pushed out and the mosaicity grows. On temperature-dependent timescales of 10 to 200 s, the unit-cell and solvent-cavity volume then expand, solvent flows back in, and the mosaicity and B factor both drop. Expansion and reordering at fixed low temperature are associated with small-amplitude but large-scale changes in the conformation and packing of apoferritin. These results demonstrate that increases in mosaicity on cooling arise due to solvent flows out of or into the unit cell and to incomplete, arrested relaxation of protein conformation. They indicate a critical role for time in variable-temperature crystallographic studies, and the feasibility of probing interactions and cooperative conformational changes that underlie cold denaturation in the presence of liquid solvent at temperatures down to ∼200 K.

Entities:  

Keywords:  cold denaturation; cryocrystallography; protein crystallography; solvent behaviour; thermal expansion

Mesh:

Substances:

Year:  2019        PMID: 31692472      PMCID: PMC6834080          DOI: 10.1107/S2059798319013822

Source DB:  PubMed          Journal:  Acta Crystallogr D Struct Biol        ISSN: 2059-7983            Impact factor:   7.652


  32 in total

1.  Solvent behaviour in flash-cooled protein crystals at cryogenic temperatures.

Authors:  M Weik; G Kryger; A M Schreurs; B Bouma; I Silman; J L Sussman; P Gros; J Kroon
Journal:  Acta Crystallogr D Biol Crystallogr       Date:  2001-04

2.  Macromolecular crystal annealing: evaluation of techniques and variables.

Authors:  J M Harp; B L Hanson; D E Timm; G J Bunick
Journal:  Acta Crystallogr D Biol Crystallogr       Date:  1999-07

3.  Flash-cooling and annealing of protein crystals.

Authors:  S Kriminski; C L Caylor; M C Nonato; K D Finkelstein; R E Thorne
Journal:  Acta Crystallogr D Biol Crystallogr       Date:  2002-02-21

4.  Reversible lattice repacking illustrates the temperature dependence of macromolecular interactions.

Authors:  D H Juers; B W Matthews
Journal:  J Mol Biol       Date:  2001-08-24       Impact factor: 5.469

5.  The role of solvent transport in cryo-annealing of macromolecular crystals.

Authors:  Douglas H Juers; Brian W Matthews
Journal:  Acta Crystallogr D Biol Crystallogr       Date:  2004-02-25

6.  Glass transition in thaumatin crystals revealed through temperature-dependent radiation-sensitivity measurements.

Authors:  Matthew Warkentin; Robert E Thorne
Journal:  Acta Crystallogr D Biol Crystallogr       Date:  2010-09-18

Review 7.  The 'glass transition' in protein dynamics: what it is, why it occurs, and how to exploit it.

Authors:  Dagmar Ringe; Gregory A Petsko
Journal:  Biophys Chem       Date:  2003-09       Impact factor: 2.352

8.  Slow cooling and temperature-controlled protein crystallography.

Authors:  Matthew Warkentin; Robert E Thorne
Journal:  J Struct Funct Genomics       Date:  2009-12-10

9.  The impact of cryosolution thermal contraction on proteins and protein crystals: volumes, conformation and order.

Authors:  Douglas H Juers; Christopher A Farley; Christopher P Saxby; Rosemary A Cotter; Jackson K B Cahn; R Conor Holton-Burke; Kaitlin Harrison; Zhenguo Wu
Journal:  Acta Crystallogr D Struct Biol       Date:  2018-09-05       Impact factor: 7.652

10.  MolProbity: all-atom structure validation for macromolecular crystallography.

Authors:  Vincent B Chen; W Bryan Arendall; Jeffrey J Headd; Daniel A Keedy; Robert M Immormino; Gary J Kapral; Laura W Murray; Jane S Richardson; David C Richardson
Journal:  Acta Crystallogr D Biol Crystallogr       Date:  2009-12-21
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  1 in total

1.  Water Networks Repopulate Protein-Ligand Interfaces with Temperature.

Authors:  Timothy R Stachowski; Murugendra Vanarotti; Jayaraman Seetharaman; Karlo Lopez; Marcus Fischer
Journal:  Angew Chem Int Ed Engl       Date:  2022-06-21       Impact factor: 16.823

  1 in total

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