Literature DB >> 23396891

A high-pressure cryocooling method for protein crystals and biological samples with reduced background X-ray scatter.

Chae Un Kim1, Jennifer L Wierman, Richard Gillilan, Enju Lima, Sol M Gruner.   

Abstract

High-pressure cryocooling has been developed as an alternative method for cryopreservation of macromolecular crystals and successfully applied for various technical and scientific studies. The method requires the preservation of crystal hydration as the crystal is pressurized with dry helium gas. Previously, crystal hydration was maintained either by coating crystals with a mineral oil or by enclosing crystals in a capillary which was filled with crystallization mother liquor. These methods are not well suited to weakly diffracting crystals because of the relatively high background scattering from the hydrating materials. Here, an alternative method of crystal hydration, called capillary shielding, is described. The specimen is kept hydrated via vapor diffusion in a shielding capillary while it is being pressure cryocooled. After cryocooling, the shielding capillary is removed to reduce background X-ray scattering. It is shown that, compared to previous crystal-hydration methods, the new hydration method produces superior crystal diffraction with little sign of crystal damage. Using the new method, a weakly diffracting protein crystal may be properly pressure cryo-cooled with little or no addition of external cryoprotectants, and significantly reduced background scattering can be observed from the resulting sample. Beyond the applications for macromolecular crystallography, it is shown that the method has great potential for the preparation of noncrystalline hydrated biological samples for coherent diffraction imaging with future X-ray sources.

Entities:  

Keywords:  coherent X-ray diffraction imaging; crystal hydration; high-pressure cryocooling; protein crystallography

Year:  2012        PMID: 23396891      PMCID: PMC3547228          DOI: 10.1107/S0021889812045013

Source DB:  PubMed          Journal:  J Appl Crystallogr        ISSN: 0021-8898            Impact factor:   3.304


  33 in total

1.  Flash-cooling and annealing of protein crystals.

Authors:  S Kriminski; C L Caylor; M C Nonato; K D Finkelstein; R E Thorne
Journal:  Acta Crystallogr D Biol Crystallogr       Date:  2002-02-21

2.  Protein dynamical transition at 110 K.

Authors:  Chae Un Kim; Mark W Tate; Sol M Gruner
Journal:  Proc Natl Acad Sci U S A       Date:  2011-12-13       Impact factor: 11.205

Review 3.  Cryocooling and radiation damage in macromolecular crystallography.

Authors:  Elspeth F Garman; Robin Leslie Owen
Journal:  Acta Crystallogr D Biol Crystallogr       Date:  2005-12-14

4.  Coupling of pressure-induced structural shifts to spectral changes in a yellow fluorescent protein.

Authors:  Buz Barstow; Nozomi Ando; Chae Un Kim; Sol M Gruner
Journal:  Biophys J       Date:  2009-09-16       Impact factor: 4.033

5.  Slow cooling of protein crystals.

Authors:  Matthew Warkentin; Robert E Thorne
Journal:  J Appl Crystallogr       Date:  2009-08-01       Impact factor: 3.304

6.  Structure determination of a novel protein by sulfur SAD using chromium radiation in combination with a new crystal-mounting method.

Authors:  Yu Kitago; Nobuhisa Watanabe; Isao Tanaka
Journal:  Acta Crystallogr D Biol Crystallogr       Date:  2005-07-20

7.  Crystallographic studies on lactate dehydrogenase at-75 degrees C.

Authors:  D J Haas; M G Rossmann
Journal:  Acta Crystallogr B       Date:  1970-07-15       Impact factor: 2.266

8.  Cryoprotection properties of salts of organic acids: a case study for a tetragonal crystal of HEW lysozyme.

Authors:  Grzegorz Bujacz; Blanka Wrzesniewska; Anna Bujacz
Journal:  Acta Crystallogr D Biol Crystallogr       Date:  2010-06-19

9.  Progress in rational methods of cryoprotection in macromolecular crystallography.

Authors:  Thomas Alcorn; Douglas H Juers
Journal:  Acta Crystallogr D Biol Crystallogr       Date:  2010-03-24

10.  Entrapment of carbon dioxide in the active site of carbonic anhydrase II.

Authors:  John F Domsic; Balendu Sankara Avvaru; Chae Un Kim; Sol M Gruner; Mavis Agbandje-McKenna; David N Silverman; Robert McKenna
Journal:  J Biol Chem       Date:  2008-09-02       Impact factor: 5.157

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  10 in total

1.  In situ X-ray data collection and structure phasing of protein crystals at Structural Biology Center 19-ID.

Authors:  Karolina Michalska; Kemin Tan; Changsoo Chang; Hui Li; Catherine Hatzos-Skintges; Michael Molitsky; Randy Alkire; Andrzej Joachimiak
Journal:  J Synchrotron Radiat       Date:  2015-10-15       Impact factor: 2.616

2.  Glass-to-cryogenic-liquid transitions in aqueous solutions suggested by crack healing.

Authors:  Chae Un Kim; Mark W Tate; Sol M Gruner
Journal:  Proc Natl Acad Sci U S A       Date:  2015-09-08       Impact factor: 11.205

3.  Reduction of lattice disorder in protein crystals by high-pressure cryocooling.

Authors:  Qingqiu Huang; Sol M Gruner; Chae Un Kim; Yuxin Mao; Xiaochun Wu; Doletha M E Szebenyi
Journal:  J Appl Crystallogr       Date:  2016-02-01       Impact factor: 3.304

4.  Characterizing metal-binding sites in proteins with X-ray crystallography.

Authors:  Katarzyna B Handing; Ewa Niedzialkowska; Ivan G Shabalin; Misty L Kuhn; Heping Zheng; Wladek Minor
Journal:  Nat Protoc       Date:  2018-04-19       Impact factor: 13.491

5.  The role of high-density and low-density amorphous ice on biomolecules at cryogenic temperatures: a case study with polyalanine.

Authors:  Ali Eltareb; Gustavo E Lopez; Nicolas Giovambattista
Journal:  Phys Chem Chem Phys       Date:  2021-09-15       Impact factor: 3.945

6.  Graphene as a protein crystal mounting material to reduce background scatter.

Authors:  Jennifer L Wierman; Jonathan S Alden; Chae Un Kim; Paul L McEuen; Sol M Gruner
Journal:  J Appl Crystallogr       Date:  2013-08-03       Impact factor: 3.304

7.  Carbon Dioxide "Trapped" in a β-Carbonic Anhydrase.

Authors:  Mayank Aggarwal; Teck Khiang Chua; Melissa A Pinard; Doletha M Szebenyi; Robert McKenna
Journal:  Biochemistry       Date:  2015-10-16       Impact factor: 3.162

Review 8.  Practical macromolecular cryocrystallography.

Authors:  J W Pflugrath
Journal:  Acta Crystallogr F Struct Biol Commun       Date:  2015-05-27       Impact factor: 1.056

9.  High-resolution X-ray crystal structure of bovine H-protein using the high-pressure cryocooling method.

Authors:  Akifumi Higashiura; Kazunori Ohta; Mika Masaki; Masaru Sato; Koji Inaka; Hiroaki Tanaka; Atsushi Nakagawa
Journal:  J Synchrotron Radiat       Date:  2013-10-05       Impact factor: 2.616

10.  Structural insights into the effect of active-site mutation on the catalytic mechanism of carbonic anhydrase.

Authors:  Jin Kyun Kim; Cheol Lee; Seon Woo Lim; Jacob T Andring; Aniruddha Adhikari; Robert McKenna; Chae Un Kim
Journal:  IUCrJ       Date:  2020-09-09       Impact factor: 4.769

  10 in total

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