Literature DB >> 11592689

Dynamical transition of myoglobin in a crystal: comparative studies of X-ray crystallography and Mössbauer spectroscopy.

S H Chong1, Y Joti, A Kidera, N Go, A Ostermann, A Gassmann, F Parak.   

Abstract

The crystallographic normal mode refinements of myoglobin at a wide range of temperature from 40 K to 300 K were carried out to study the temperature dependence of the internal atomic fluctuations. The refinement method decomposes the mean square displacement from the average position, (deltar2), into the contributions from the internal degrees of freedom and those from the external degrees of freedom. The internal displacements show linear temperature dependence as (deltar2)=alphaT+beta, throughout the temperature range measured here, and exhibit no obvious change in the slope alpha at the dynamical transition temperature (Tc=ca. 180 K). The slope alpha is practically the same as the value predicted theoretically by normal mode analysis. Such linear dependence is considered to be due to the following reason. The crystallographic Debye-Waller factor represents the static distribution caused by convolution of temperature-dependent normal mode motions and a temperature-independent set of the conformational substates. In contrast, Mössbauer absorption spectroscopy shows a clear increase in the gradient alpha at Tc. This difference from X-ray diffraction originates from the incoherent nature of the Mössbauer effect together with its high-energy resolution, which yields the self-correlation, and the temporal behavior of individual Fe atoms in the myoglobin crystal.

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Year:  2001        PMID: 11592689     DOI: 10.1007/s002490100152

Source DB:  PubMed          Journal:  Eur Biophys J        ISSN: 0175-7571            Impact factor:   1.733


  24 in total

1.  Temperature derivative fluorescence spectroscopy as a tool to study dynamical changes in protein crystals.

Authors:  Martin Weik; Xavier Vernede; Antoine Royant; Dominique Bourgeois
Journal:  Biophys J       Date:  2004-05       Impact factor: 4.033

2.  Neutron frequency windows and the protein dynamical transition.

Authors:  Torsten Becker; Jennifer A Hayward; John L Finney; Roy M Daniel; Jeremy C Smith
Journal:  Biophys J       Date:  2004-09       Impact factor: 4.033

3.  Bulk-solvent and hydration-shell fluctuations, similar to alpha- and beta-fluctuations in glasses, control protein motions and functions.

Authors:  P W Fenimore; Hans Frauenfelder; B H McMahon; R D Young
Journal:  Proc Natl Acad Sci U S A       Date:  2004-09-24       Impact factor: 11.205

4.  Protein dynamical transition at 110 K.

Authors:  Chae Un Kim; Mark W Tate; Sol M Gruner
Journal:  Proc Natl Acad Sci U S A       Date:  2011-12-13       Impact factor: 11.205

5.  Fluctuations and correlations in crystalline protein dynamics: a simulation analysis of staphylococcal nuclease.

Authors:  Lars Meinhold; Jeremy C Smith
Journal:  Biophys J       Date:  2005-01-28       Impact factor: 4.033

6.  Infrared absorption study of the heme pocket dynamics of carbonmonoxyheme proteins.

Authors:  Andras D Kaposi; Jane M Vanderkooi; Solomon S Stavrov
Journal:  Biophys J       Date:  2006-09-15       Impact factor: 4.033

7.  A unified model of protein dynamics.

Authors:  Hans Frauenfelder; Guo Chen; Joel Berendzen; Paul W Fenimore; Helén Jansson; Benjamin H McMahon; Izabela R Stroe; Jan Swenson; Robert D Young
Journal:  Proc Natl Acad Sci U S A       Date:  2009-02-27       Impact factor: 11.205

8.  Protein dynamics of a beta-sheet protein.

Authors:  Marius Schmidt; Klaus Achterhold; Valeriy Prusakov; Fritz G Parak
Journal:  Eur Biophys J       Date:  2009-03-07       Impact factor: 1.733

9.  A physical picture of protein dynamics and conformational changes.

Authors:  Fritz G Parak; Klaus Achterhold; Simonetta Croci; Marius Schmidt
Journal:  J Biol Phys       Date:  2008-08-27       Impact factor: 1.365

10.  Slow cooling and temperature-controlled protein crystallography.

Authors:  Matthew Warkentin; Robert E Thorne
Journal:  J Struct Funct Genomics       Date:  2009-12-10
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