Literature DB >> 16129597

Advances in kinetic protein crystallography.

Dominique Bourgeois1, Antoine Royant.   

Abstract

Many proteins function in the crystalline state, making crystallography a tool that can address mechanism, as well as structure. By initiating biological turnover in the crystal, transient structural species form, which may be filmed by Laue diffraction or captured by freeze-trapping methods. Laue diffraction has now reached an unprecedented level of sophistication and has found a 'niche of excellence' in the study of cyclic, ultra-fast, light-triggered reactions. Trapping methods, on the other hand, are more generally applicable, but require care to avoid artifacts. New strategies have been developed and difficulties such as radiation damage have received particular attention. Complementary methods--mainly UV/visible single-crystal spectroscopy--have proven essential to design, interpret and validate kinetic crystallography experiments.

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Year:  2005        PMID: 16129597     DOI: 10.1016/j.sbi.2005.08.002

Source DB:  PubMed          Journal:  Curr Opin Struct Biol        ISSN: 0959-440X            Impact factor:   6.809


  43 in total

1.  Photochemical tools to study dynamic biological processes.

Authors:  Alexandre Specht; Frédéric Bolze; Ziad Omran; Jean-François Nicoud; Maurice Goeldner
Journal:  HFSP J       Date:  2009-05-22

2.  Biocrystallography: past, present, future.

Authors:  Richard Giegé; Claude Sauter
Journal:  HFSP J       Date:  2010-04-22

3.  Glass transition in thaumatin crystals revealed through temperature-dependent radiation-sensitivity measurements.

Authors:  Matthew Warkentin; Robert E Thorne
Journal:  Acta Crystallogr D Biol Crystallogr       Date:  2010-09-18

Review 4.  Application of structural dynamic approaches provide novel insights into the enzymatic mechanism of the tumor necrosis factor-alpha-converting enzyme.

Authors:  Irit Sagi; Marcos E Milla
Journal:  Anal Biochem       Date:  2007-09-26       Impact factor: 3.365

Review 5.  Synergy within structural biology of single crystal optical spectroscopy and X-ray crystallography.

Authors:  Teresa De la Mora-Rey; Carrie M Wilmot
Journal:  Curr Opin Struct Biol       Date:  2007-10-23       Impact factor: 6.809

6.  Shoot-and-Trap: use of specific x-ray damage to study structural protein dynamics by temperature-controlled cryo-crystallography.

Authors:  Jacques-Philippe Colletier; Dominique Bourgeois; Benoît Sanson; Didier Fournier; Joel L Sussman; Israel Silman; Martin Weik
Journal:  Proc Natl Acad Sci U S A       Date:  2008-08-13       Impact factor: 11.205

7.  The associative nature of adenylyl transfer catalyzed by T4 DNA ligase.

Authors:  Alexey V Cherepanov; Elena V Doroshenko; Jörg Matysik; Simon de Vries; Huub J M de Groot
Journal:  Proc Natl Acad Sci U S A       Date:  2008-06-18       Impact factor: 11.205

8.  Identification of the NAD(P)H binding site of eukaryotic UDP-galactopyranose mutase.

Authors:  Richa Dhatwalia; Harkewal Singh; Luis M Solano; Michelle Oppenheimer; Reeder M Robinson; Jacob F Ellerbrock; Pablo Sobrado; John J Tanner
Journal:  J Am Chem Soc       Date:  2012-10-19       Impact factor: 15.419

9.  Slow cooling and temperature-controlled protein crystallography.

Authors:  Matthew Warkentin; Robert E Thorne
Journal:  J Struct Funct Genomics       Date:  2009-12-10

10.  Exploring the binding pocket for pyridopyrimidine ligands at the CCK1 receptor by molecular docking.

Authors:  Amel Toumi-Maouche; Boubekeur Maouche; Safia Taïri-Kellou; Salima El-Aoufi; Mercedes Martín-Martínez; Rosario González-Muñiz; Daniel Fourmy; Bernard Maigret
Journal:  J Mol Model       Date:  2008-02-20       Impact factor: 1.810

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