Literature DB >> 19029894

Structure of a RSC-nucleosome complex and insights into chromatin remodeling.

Yuriy Chaban1, Chukwudi Ezeokonkwo, Wen-Hsiang Chung, Fan Zhang, Roger D Kornberg, Barbara Maier-Davis, Yahli Lorch, Francisco J Asturias.   

Abstract

ATP-dependent chromatin-remodeling complexes, such as RSC, can reposition, evict or restructure nucleosomes. A structure of a RSC-nucleosome complex with a nucleosome determined by cryo-EM shows the nucleosome bound in a central RSC cavity. Extensive interaction of RSC with histones and DNA seems to destabilize the nucleosome and lead to an overall ATP-independent rearrangement of its structure. Nucleosomal DNA appears disordered and largely free to bulge out into solution as required for remodeling, but the structure of the RSC-nucleosome complex indicates that RSC is unlikely to displace the octamer from the nucleosome to which it is bound. Consideration of the RSC-nucleosome structure and published biochemical information suggests that ATP-dependent DNA translocation by RSC may result in the eviction of histone octamers from adjacent nucleosomes.

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Year:  2008        PMID: 19029894      PMCID: PMC2659406          DOI: 10.1038/nsmb.1524

Source DB:  PubMed          Journal:  Nat Struct Mol Biol        ISSN: 1545-9985            Impact factor:   15.369


  37 in total

1.  RSC unravels the nucleosome.

Authors:  Y Lorch; M Zhang; R D Kornberg
Journal:  Mol Cell       Date:  2001-01       Impact factor: 17.970

2.  Using situs for flexible and rigid-body fitting of multiresolution single-molecule data.

Authors:  W Wriggers; S Birmanns
Journal:  J Struct Biol       Date:  2001 Feb-Mar       Impact factor: 2.867

3.  Phosphorylation of linker histones regulates ATP-dependent chromatin remodeling enzymes.

Authors:  Peter J Horn; Lenny M Carruthers; Colin Logie; David A Hill; Mark J Solomon; Paul A Wade; Anthony N Imbalzano; Jeffrey C Hansen; Craig L Peterson
Journal:  Nat Struct Biol       Date:  2002-04

4.  Bilayers of nucleosome core particles.

Authors:  A Leforestier; J Dubochet; F Livolant
Journal:  Biophys J       Date:  2001-10       Impact factor: 4.033

5.  Docking of atomic models into reconstructions from electron microscopy.

Authors:  Niels Volkmann; Dorit Hanein
Journal:  Methods Enzymol       Date:  2003       Impact factor: 1.600

6.  Structural analysis of the RSC chromatin-remodeling complex.

Authors:  Francisco J Asturias; Wen-Hsiang Chung; Roger D Kornberg; Yahli Lorch
Journal:  Proc Natl Acad Sci U S A       Date:  2002-10-04       Impact factor: 11.205

7.  Structure of yeast RNA polymerase II in solution: implications for enzyme regulation and interaction with promoter DNA.

Authors:  John L Craighead; Wei-hau Chang; Francisco J Asturias
Journal:  Structure       Date:  2002-08       Impact factor: 5.006

8.  Removal of promoter nucleosomes by disassembly rather than sliding in vivo.

Authors:  Hinrich Boeger; Joachim Griesenbeck; J Seth Strattan; Roger D Kornberg
Journal:  Mol Cell       Date:  2004-06-04       Impact factor: 17.970

9.  Nucleosomes unfold completely at a transcriptionally active promoter.

Authors:  Hinrich Boeger; Joachim Griesenbeck; J Seth Strattan; Roger D Kornberg
Journal:  Mol Cell       Date:  2003-06       Impact factor: 17.970

10.  Architecture of the SWI/SNF-nucleosome complex.

Authors:  Mekonnen Lemma Dechassa; Bei Zhang; Rachel Horowitz-Scherer; Jim Persinger; Christopher L Woodcock; Craig L Peterson; Blaine Bartholomew
Journal:  Mol Cell Biol       Date:  2008-07-21       Impact factor: 4.272

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  69 in total

1.  Remodelers organize cellular chromatin by counteracting intrinsic histone-DNA sequence preferences in a class-specific manner.

Authors:  Yuri M Moshkin; Gillian E Chalkley; Tsung Wai Kan; B Ashok Reddy; Zeliha Ozgur; Wilfred F J van Ijcken; Dick H W Dekkers; Jeroen A Demmers; Andrew A Travers; C Peter Verrijzer
Journal:  Mol Cell Biol       Date:  2011-11-28       Impact factor: 4.272

2.  In vivo role for the chromatin-remodeling enzyme SWI/SNF in the removal of promoter nucleosomes by disassembly rather than sliding.

Authors:  Christopher R Brown; Changhui Mao; Elena Falkovskaia; Jason K Law; Hinrich Boeger
Journal:  J Biol Chem       Date:  2011-10-06       Impact factor: 5.157

3.  Allosteric interactions of DNA and nucleotides with S. cerevisiae RSC.

Authors:  Shuja Shafi Malik; Evan Rich; Ramya Viswanathan; Bradley R Cairns; Christopher J Fischer
Journal:  Biochemistry       Date:  2011-08-26       Impact factor: 3.162

Review 4.  Nucleosome remodeling and epigenetics.

Authors:  Peter B Becker; Jerry L Workman
Journal:  Cold Spring Harb Perspect Biol       Date:  2013-09-01       Impact factor: 10.005

Review 5.  Nucleosome sliding mechanisms: new twists in a looped history.

Authors:  Felix Mueller-Planitz; Henrike Klinker; Peter B Becker
Journal:  Nat Struct Mol Biol       Date:  2013-09       Impact factor: 15.369

Review 6.  Mechanisms for ATP-dependent chromatin remodelling: the means to the end.

Authors:  Andrew Flaus; Tom Owen-Hughes
Journal:  FEBS J       Date:  2011-09-08       Impact factor: 5.542

7.  Histone Acetylation Inhibits RSC and Stabilizes the +1 Nucleosome.

Authors:  Yahli Lorch; Barbara Maier-Davis; Roger D Kornberg
Journal:  Mol Cell       Date:  2018-10-25       Impact factor: 17.970

8.  Remosomes: RSC generated non-mobilized particles with approximately 180 bp DNA loosely associated with the histone octamer.

Authors:  Manu Shubhdarshan Shukla; Sajad Hussain Syed; Fabien Montel; Cendrine Faivre-Moskalenko; Jan Bednar; Andrew Travers; Dimitar Angelov; Stefan Dimitrov
Journal:  Proc Natl Acad Sci U S A       Date:  2010-01-13       Impact factor: 11.205

9.  The RSC chromatin remodelling ATPase translocates DNA with high force and small step size.

Authors:  George Sirinakis; Cedric R Clapier; Ying Gao; Ramya Viswanathan; Bradley R Cairns; Yongli Zhang
Journal:  EMBO J       Date:  2011-05-06       Impact factor: 11.598

Review 10.  Mechanisms of action and regulation of ATP-dependent chromatin-remodelling complexes.

Authors:  Cedric R Clapier; Janet Iwasa; Bradley R Cairns; Craig L Peterson
Journal:  Nat Rev Mol Cell Biol       Date:  2017-05-17       Impact factor: 94.444

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